Wall clock time and date at job start Tue Mar 31 2020 10:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86804 * 119.99702 * 2 1 4 4 H 1.48502 * 109.46929 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47141 * 299.99889 * 3 2 1 6 6 H 1.48495 * 109.47223 * 60.00112 * 3 2 1 7 7 C 1.38803 * 120.00394 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00562 * 162.49733 * 7 2 1 9 9 N 1.36938 * 119.99694 * 342.21759 * 7 2 1 10 10 C 1.46884 * 120.46543 * 331.57163 * 9 7 2 11 11 C 1.52862 * 109.01691 * 235.48694 * 10 9 7 12 12 C 1.52670 * 109.17478 * 307.81681 * 11 10 9 13 13 C 1.53487 * 113.62202 * 188.99407 * 12 11 10 14 14 N 1.47671 * 85.98521 * 137.70890 * 13 12 11 15 15 C 1.34771 * 134.45668 * 155.71630 * 14 13 12 16 16 O 1.21288 * 120.00125 * 179.97438 * 15 14 13 17 17 C 1.50704 * 120.00159 * 359.95380 * 15 14 13 18 18 C 1.50699 * 109.47143 * 180.02562 * 17 15 14 19 19 C 1.38667 * 120.42174 * 89.99508 * 18 17 15 20 20 C 1.38627 * 118.42259 * 179.97438 * 19 18 17 21 21 C 1.38232 * 119.16195 * 0.02562 * 20 19 18 22 22 N 1.31855 * 120.75997 * 359.97438 * 21 20 19 23 23 C 1.31887 * 121.72719 * 359.70374 * 22 21 20 24 24 C 1.47666 * 91.08705 * 335.68047 * 14 13 12 25 25 C 1.52670 * 113.18448 * 57.46516 * 12 11 10 26 26 C 1.46880 * 120.46673 * 151.84793 * 9 7 2 27 27 H 0.96999 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.58970 * 355.31048 * 10 9 7 29 29 H 1.08997 * 109.59051 * 115.74964 * 10 9 7 30 30 H 1.09007 * 109.60898 * 187.83981 * 11 10 9 31 31 H 1.09004 * 109.38926 * 67.65814 * 11 10 9 32 32 H 1.09000 * 113.78914 * 251.97481 * 13 12 11 33 33 H 1.09000 * 113.78871 * 23.44336 * 13 12 11 34 34 H 1.09000 * 109.46993 * 299.99531 * 17 15 14 35 35 H 1.08998 * 109.46744 * 59.99857 * 17 15 14 36 36 H 1.08004 * 120.79160 * 359.97438 * 19 18 17 37 37 H 1.07994 * 120.42355 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.61955 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.61640 * 180.31117 * 23 22 21 40 40 H 1.09000 * 113.79346 * 270.04744 * 24 14 13 41 41 H 1.09001 * 113.79382 * 138.57631 * 24 14 13 42 42 H 1.09004 * 109.53457 * 182.52043 * 25 12 11 43 43 H 1.09000 * 109.53307 * 62.29763 * 25 12 11 44 44 H 1.09003 * 109.58898 * 244.26038 * 26 9 7 45 45 H 1.08998 * 109.59069 * 4.68932 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0528 -1.2236 -0.2818 9 7 1.3747 -2.3598 0.3611 10 6 0.2473 -2.3277 1.3021 11 6 0.5499 -3.2613 2.4741 12 6 0.9358 -4.6359 1.9335 13 6 1.0494 -5.7143 3.0198 14 7 0.3485 -6.5996 2.0681 15 6 0.2842 -7.9343 1.8925 16 8 -0.3943 -8.3964 0.9997 17 6 1.0557 -8.8525 2.8051 18 6 0.8151 -10.2834 2.3983 19 6 1.6409 -10.8975 1.4687 20 6 1.3821 -12.2153 1.1251 21 6 0.3168 -12.8687 1.7158 22 7 -0.4477 -12.2530 2.5962 23 6 -0.2274 -11.0022 2.9515 24 6 -0.2543 -5.4365 1.3866 25 6 2.1316 -4.5948 0.9852 26 6 1.8147 -3.6517 -0.1817 27 1 -0.4850 0.8400 -0.0004 28 1 0.1091 -1.3119 1.6724 29 1 -0.6594 -2.6616 0.7975 30 1 -0.3334 -3.3531 3.1062 31 1 1.3759 -2.8539 3.0572 32 1 2.0742 -6.0193 3.2311 33 1 0.4753 -5.4939 3.9198 34 1 2.1198 -8.6282 2.7311 35 1 0.7240 -8.7058 3.8329 36 1 2.4660 -10.3618 1.0231 37 1 2.0048 -12.7250 0.4049 38 1 0.1082 -13.8952 1.4532 39 1 -0.8721 -10.5327 3.6797 40 1 -1.2158 -5.1336 1.8012 41 1 -0.2654 -5.5207 0.2999 42 1 2.3271 -5.5962 0.6015 43 1 3.0087 -4.2307 1.5201 44 1 1.0207 -4.0807 -0.7931 45 1 2.7087 -3.5079 -0.7884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050488755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:56 Heat of formation + Delta-G solvation = 36.120201 kcal Electronic energy + Delta-G solvation = -25995.545720 eV Core-core repulsion = 22399.796519 eV Total energy + Delta-G solvation = -3595.749201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.89088 -41.07736 -39.45446 -37.47304 -34.56566 -34.21169 -32.85686 -32.23002 -31.43774 -29.63072 -28.02036 -27.02186 -25.83407 -24.51431 -23.95337 -23.31817 -22.45326 -20.24800 -19.47951 -18.41988 -18.02366 -17.82332 -17.46986 -16.95317 -16.76907 -16.65530 -15.87176 -15.58416 -15.42291 -15.10785 -14.95426 -14.76135 -14.42098 -14.28025 -13.96289 -13.86261 -13.77401 -13.39791 -13.10259 -13.01116 -12.91915 -12.87770 -12.57837 -12.45729 -12.23130 -11.98598 -11.79371 -11.37716 -11.29028 -11.20690 -10.87018 -10.63550 -10.48038 -10.41502 -9.90689 -9.66995 -8.63312 -7.84956 -5.30400 0.14354 0.35727 1.47386 1.49930 1.59866 1.62147 1.87399 2.53248 2.86335 3.26917 3.44256 3.49558 3.57955 3.72402 3.76280 3.87201 3.94203 4.07692 4.10233 4.11593 4.27066 4.44417 4.49117 4.51797 4.56712 4.63618 4.65082 4.73738 4.75735 4.83533 4.86393 4.91582 4.95242 5.05420 5.17463 5.18243 5.22694 5.30613 5.38904 5.39777 5.56921 5.68629 5.78682 5.83251 6.42778 6.77579 7.02163 7.13973 7.18623 7.90377 8.40782 9.20764 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.039572 B = 0.002469 C = 0.002427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.403894 B =11338.544263 C =11532.068203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.297 1.297 6 H -0.288 1.288 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.174 3.826 11 C -0.111 4.111 12 C -0.077 4.077 13 C 0.121 3.879 14 N -0.638 5.638 15 C 0.529 3.471 16 O -0.594 6.594 17 C -0.081 4.081 18 C -0.126 4.126 19 C -0.075 4.075 20 C -0.171 4.171 21 C 0.080 3.920 22 N -0.516 5.516 23 C 0.092 3.908 24 C 0.110 3.890 25 C -0.092 4.092 26 C 0.142 3.858 27 H 0.249 0.751 28 H 0.054 0.946 29 H -0.009 1.009 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.149 0.851 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.160 0.840 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.001 0.999 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 -20.204 10.518 23.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.224 1.224 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.331 5.331 10 C 0.049 3.951 11 C -0.150 4.150 12 C -0.078 4.078 13 C 0.000 4.000 14 N -0.372 5.372 15 C 0.320 3.680 16 O -0.475 6.475 17 C -0.121 4.121 18 C -0.128 4.128 19 C -0.101 4.101 20 C -0.191 4.191 21 C -0.076 4.076 22 N -0.224 5.224 23 C -0.064 4.064 24 C -0.012 4.012 25 C -0.131 4.131 26 C 0.016 3.984 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.130 0.870 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.167 0.833 37 H 0.180 0.820 38 H 0.194 0.806 39 H 0.177 0.823 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.019 0.981 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.897 -21.002 10.387 23.937 hybrid contribution 0.364 1.734 -1.107 2.090 sum 5.261 -19.268 9.280 22.024 Atomic orbital electron populations 1.70199 1.06670 1.25696 1.55552 1.25766 0.95963 1.01430 1.01473 0.85260 0.78733 0.80088 0.76671 1.19023 1.22433 1.21504 1.19526 0.92976 0.86130 1.40238 0.91705 1.44284 1.37323 1.01943 1.49567 1.20520 0.87608 0.98154 0.88837 1.21825 1.01473 0.93844 0.97898 1.21898 0.95082 0.94319 0.96498 1.23565 0.99328 0.84141 0.92946 1.50170 1.48926 1.03381 1.34757 1.20866 0.81221 0.81071 0.84794 1.90715 1.44600 1.75769 1.36457 1.20568 1.03068 0.88116 1.00339 1.20516 0.97299 0.96204 0.98778 1.21827 0.98826 0.95199 0.94229 1.22456 0.99571 0.95496 1.01532 1.23237 0.91213 1.01134 0.92062 1.67666 1.29009 1.11046 1.14721 1.22845 0.94982 0.90210 0.98386 1.23203 0.97815 0.82386 0.97838 1.21558 0.96669 0.98598 0.96274 1.21002 0.96658 0.86347 0.94380 0.94197 0.92769 0.99079 0.90362 0.91419 0.86987 0.86969 0.85049 0.84935 0.83313 0.81992 0.80598 0.82259 0.89586 0.93025 0.91512 0.90711 0.98061 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.53 11.22 21.65 0.24 -54.29 16 2 C -0.05 -2.79 4.89 84.86 0.41 -2.38 16 3 Si 0.96 43.93 29.59 68.60 2.03 45.96 16 4 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 7 C -0.26 -13.81 9.56 84.03 0.80 -13.00 16 8 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 9 N -0.61 -29.21 2.97 -699.68 -2.08 -31.28 16 10 C 0.17 7.84 5.21 86.26 0.45 8.29 16 11 C -0.11 -3.45 5.24 30.44 0.16 -3.29 16 12 C -0.08 -2.04 0.77 -52.03 -0.04 -2.08 16 13 C 0.12 2.06 7.75 86.31 0.67 2.73 16 14 N -0.64 -15.10 3.44 -842.47 -2.90 -18.00 16 15 C 0.53 13.42 8.05 87.66 0.71 14.12 16 16 O -0.59 -21.42 16.76 -3.05 -0.05 -21.47 16 17 C -0.08 -1.24 5.61 29.10 0.16 -1.08 16 18 C -0.13 -2.45 4.39 -19.77 -0.09 -2.54 16 19 C -0.07 -1.34 9.86 22.47 0.22 -1.12 16 20 C -0.17 -2.76 10.11 22.36 0.23 -2.54 16 21 C 0.08 1.49 11.18 84.69 0.95 2.44 16 22 N -0.52 -12.22 10.36 -195.84 -2.03 -14.25 16 23 C 0.09 2.01 10.86 84.67 0.92 2.93 16 24 C 0.11 3.22 7.62 86.32 0.66 3.87 16 25 C -0.09 -2.70 5.21 30.60 0.16 -2.54 16 26 C 0.14 5.67 6.38 86.42 0.55 6.22 16 27 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.05 2.81 5.98 -2.39 -0.01 2.80 16 29 H -0.01 -0.44 8.07 -2.39 -0.02 -0.46 16 30 H 0.08 2.06 8.12 -2.38 -0.02 2.04 16 31 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 32 H 0.11 1.29 8.09 -2.39 -0.02 1.27 16 33 H 0.11 1.43 8.09 -2.39 -0.02 1.41 16 34 H 0.13 1.30 8.09 -2.39 -0.02 1.28 16 35 H 0.13 1.29 8.09 -2.39 -0.02 1.27 16 36 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.18 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 40 H 0.09 2.43 8.07 -2.39 -0.02 2.42 16 41 H 0.05 1.80 7.41 -2.39 -0.02 1.78 16 42 H 0.07 1.78 8.01 -2.38 -0.02 1.76 16 43 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.00 0.06 7.49 -2.39 -0.02 0.04 16 45 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 Total: -1.00 -75.42 366.52 3.11 -72.32 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 0.97 Total: 10.97 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: 6.92 Total: 10.04 kcal Atomic # 7 Polarization: -111.05 SS G_CDS: -6.76 Total: -117.82 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -75.42 3.11 -72.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050488755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.436 kcal (2) G-P(sol) polarization free energy of solvation -75.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds