Wall clock time and date at job start Tue Mar 31 2020 10:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47610 * 240.00300 * 3 2 1 5 5 H 1.48503 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47017 * 119.99723 * 3 2 1 7 7 C 1.38818 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99723 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.47478 * 125.66259 * 359.97034 * 9 7 2 11 11 C 1.55031 * 104.90566 * 204.03154 * 10 9 7 12 12 C 1.54498 * 101.51990 * 323.64716 * 11 10 9 13 13 C 1.47193 * 125.66009 * 180.02562 * 9 7 2 14 14 C 1.52246 * 110.24723 * 276.23243 * 12 11 10 15 15 C 1.53163 * 109.62455 * 297.03646 * 14 12 11 16 16 C 1.53189 * 109.27657 * 299.84084 * 15 14 12 17 17 N 1.46934 * 108.91720 * 55.23657 * 16 15 14 18 18 C 1.34773 * 120.69873 * 125.81298 * 17 16 15 19 19 O 1.21553 * 119.99995 * 354.18219 * 18 17 16 20 20 C 1.47842 * 119.99828 * 174.19068 * 18 17 16 21 21 C 1.40021 * 120.55701 * 320.49579 * 20 18 17 22 22 C 1.38359 * 118.28354 * 179.73787 * 21 20 18 23 23 C 1.38346 * 119.30592 * 0.51954 * 22 21 20 24 24 N 1.31921 * 121.07958 * 359.74367 * 23 22 21 25 25 C 1.31690 * 121.88195 * 359.97438 * 24 23 22 26 26 C 1.47079 * 118.59790 * 305.83183 * 17 16 15 27 27 H 0.96997 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.35393 * 322.89110 * 10 9 7 29 29 H 1.09001 * 110.35493 * 85.06829 * 10 9 7 30 30 H 1.08995 * 111.01221 * 205.58412 * 11 10 9 31 31 H 1.08997 * 111.01356 * 81.70328 * 11 10 9 32 32 H 1.09004 * 109.91039 * 59.10455 * 13 9 7 33 33 H 1.08997 * 109.90743 * 297.83122 * 13 9 7 34 34 H 1.09000 * 109.43464 * 177.00392 * 14 12 11 35 35 H 1.08996 * 109.44044 * 57.07799 * 14 12 11 36 36 H 1.09001 * 109.50296 * 59.78214 * 15 14 12 37 37 H 1.09007 * 109.50149 * 179.90078 * 15 14 12 38 38 H 1.09001 * 109.56418 * 175.07049 * 16 15 14 39 39 H 1.08998 * 109.56297 * 295.40553 * 16 15 14 40 40 H 1.07999 * 120.85751 * 359.97438 * 21 20 18 41 41 H 1.08008 * 120.34586 * 180.25868 * 22 21 20 42 42 H 1.08003 * 119.46306 * 179.72036 * 23 22 21 43 43 H 1.08002 * 119.72248 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.57503 * 172.25418 * 26 17 16 45 45 H 1.09000 * 109.57573 * 292.63538 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1421 -2.5336 -0.0016 11 6 -0.4039 -3.9351 0.6072 12 6 0.7808 -4.7458 0.0359 13 6 1.9322 -3.7292 -0.0017 14 6 0.4527 -5.2417 -1.3656 15 6 -0.7429 -6.1972 -1.3065 16 6 -0.3919 -7.3919 -0.4143 17 7 0.0331 -6.8951 0.9016 18 6 -0.5604 -7.3366 2.0282 19 8 -1.5255 -8.0723 1.9586 20 6 -0.0375 -6.9261 3.3487 21 6 1.3419 -6.8375 3.5720 22 6 1.7794 -6.4432 4.8240 23 6 0.8494 -6.1625 5.8089 24 7 -0.4446 -6.2599 5.5714 25 6 -0.9102 -6.6256 4.3951 26 6 1.1195 -5.9056 0.9633 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5997 -1.7605 0.6157 29 1 -0.5281 -2.4826 -1.0197 30 1 -1.3560 -4.3389 0.2632 31 1 -0.3657 -3.9016 1.6960 32 1 2.5639 -3.8509 0.8782 33 1 2.5218 -3.8697 -0.9076 34 1 1.3158 -5.7657 -1.7763 35 1 0.2071 -4.3922 -2.0028 36 1 -1.6058 -5.6751 -0.8929 37 1 -0.9772 -6.5495 -2.3111 38 1 -1.2677 -8.0304 -0.2980 39 1 0.4189 -7.9611 -0.8689 40 1 2.0462 -7.0672 2.7861 41 1 2.8361 -6.3597 5.0315 42 1 1.1882 -5.8589 6.7885 43 1 -1.9767 -6.6942 4.2391 44 1 1.2219 -5.5389 1.9846 45 1 2.0534 -6.3682 0.6440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054072267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:25 Heat of formation + Delta-G solvation = 37.453142 kcal Electronic energy + Delta-G solvation = -27381.960651 eV Core-core repulsion = 23786.269250 eV Total energy + Delta-G solvation = -3595.691400 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05021 -39.70220 -38.36416 -35.79239 -33.59500 -32.78774 -31.95508 -31.24658 -30.07237 -28.69193 -26.10660 -25.70133 -24.07032 -23.94577 -23.41751 -22.00170 -20.36148 -19.68250 -18.41510 -17.43433 -17.19243 -16.86494 -16.44526 -15.94091 -15.17896 -14.99455 -14.76859 -14.55271 -14.10910 -13.88088 -13.84590 -13.41344 -13.32928 -13.23441 -12.96039 -12.66775 -12.27355 -12.26550 -11.99684 -11.59631 -11.25097 -11.03519 -10.93200 -10.82430 -10.58983 -10.27321 -10.18805 -10.14279 -9.97505 -9.91017 -9.74262 -9.54679 -9.50780 -9.30675 -8.66544 -8.57296 -6.85969 -5.67140 -3.09177 0.60215 1.03142 2.62354 2.91195 3.38171 3.42520 3.44086 3.66122 4.15982 4.41815 4.46919 4.56629 4.64607 4.81786 4.84218 4.95521 5.03893 5.08064 5.24062 5.26369 5.42293 5.47494 5.51660 5.53419 5.64551 5.72894 5.78662 5.79752 5.84005 5.91623 5.98965 6.01954 6.25796 6.29425 6.38202 6.42725 6.49922 6.52463 6.64799 6.76419 6.85725 7.29823 7.50073 7.59672 7.73458 7.84403 8.04131 8.34167 9.19619 9.80645 10.45793 11.36412 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.004508 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.337779 B = 6209.653935 C = 7492.625181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.913 3.087 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.224 4.224 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.155 3.845 11 C -0.131 4.131 12 C -0.084 4.084 13 C 0.150 3.850 14 C -0.100 4.100 15 C -0.136 4.136 16 C 0.114 3.886 17 N -0.597 5.597 18 C 0.568 3.432 19 O -0.540 6.540 20 C -0.179 4.179 21 C -0.044 4.044 22 C -0.178 4.178 23 C 0.118 3.882 24 N -0.486 5.486 25 C 0.154 3.846 26 C 0.115 3.885 27 H 0.253 0.747 28 H 0.103 0.897 29 H 0.011 0.989 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.024 0.976 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.160 0.840 43 H 0.164 0.836 44 H 0.091 0.909 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -15.597 4.265 16.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.205 4.205 3 Si 0.744 3.256 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.353 4.353 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.030 3.970 11 C -0.170 4.170 12 C -0.086 4.086 13 C 0.023 3.977 14 C -0.137 4.137 15 C -0.174 4.174 16 C -0.008 4.008 17 N -0.329 5.329 18 C 0.356 3.644 19 O -0.418 6.418 20 C -0.184 4.184 21 C -0.070 4.070 22 C -0.197 4.197 23 C -0.039 4.039 24 N -0.195 5.195 25 C -0.004 4.004 26 C -0.007 4.007 27 H 0.063 0.937 28 H 0.121 0.879 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.042 0.958 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.085 0.915 40 H 0.160 0.840 41 H 0.160 0.840 42 H 0.177 0.823 43 H 0.181 0.819 44 H 0.109 0.891 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.601 -15.562 4.881 16.388 hybrid contribution 1.263 0.805 -0.825 1.710 sum 2.865 -14.757 4.056 15.570 Atomic orbital electron populations 1.69796 1.04897 1.24899 1.57388 1.24780 0.95689 0.97686 1.02381 0.86173 0.78422 0.83143 0.77868 1.21225 1.21568 1.21179 1.19009 0.90416 0.82465 1.43362 0.90605 1.44502 1.01894 0.99501 1.86860 1.21917 0.84561 0.92413 0.98065 1.23017 0.95884 0.98680 0.99389 1.21339 0.98322 0.94014 0.94888 1.21147 0.92913 0.85793 0.97815 1.21354 0.97165 0.98978 0.96240 1.22002 0.99641 0.96373 0.99380 1.21632 1.00854 0.96522 0.81832 1.48007 1.36714 1.42275 1.05919 1.18077 0.82527 0.80244 0.83590 1.90768 1.26311 1.37637 1.87079 1.20933 0.95147 1.06230 0.96124 1.21884 0.94452 0.93253 0.97411 1.22127 1.01852 1.01869 0.93878 1.23007 0.88357 0.93011 0.99474 1.67774 1.16457 1.13165 1.22062 1.22907 1.00410 0.90467 0.86569 1.22035 0.88635 0.88646 1.01423 0.93675 0.87893 0.97060 0.92193 0.92803 0.96033 0.95808 0.92261 0.90686 0.90899 0.90891 0.89119 0.91480 0.84008 0.83980 0.82257 0.81917 0.89137 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 4 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.22 -6.09 10.28 -15.06 -0.15 -6.25 16 8 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -14.82 3.40 -170.23 -0.58 -15.39 16 10 C 0.16 3.68 5.57 -2.43 -0.01 3.67 16 11 C -0.13 -2.45 5.73 -24.87 -0.14 -2.59 16 12 C -0.08 -1.33 0.55 -154.12 -0.09 -1.42 16 13 C 0.15 2.90 6.43 -3.33 -0.02 2.87 16 14 C -0.10 -1.42 4.55 -27.03 -0.12 -1.54 16 15 C -0.14 -1.67 5.90 -26.55 -0.16 -1.82 16 16 C 0.11 1.34 6.42 -3.71 -0.02 1.31 16 17 N -0.60 -7.77 2.82 -174.29 -0.49 -8.26 16 18 C 0.57 8.18 7.36 -12.33 -0.09 8.09 16 19 O -0.54 -9.18 16.35 5.32 0.09 -9.09 16 20 C -0.18 -2.33 5.15 -104.82 -0.54 -2.87 16 21 C -0.04 -0.47 7.52 -38.87 -0.29 -0.76 16 22 C -0.18 -1.67 10.10 -39.50 -0.40 -2.07 16 23 C 0.12 1.23 11.17 -17.47 -0.20 1.04 16 24 N -0.49 -6.35 10.35 -12.91 -0.13 -6.49 16 25 C 0.15 2.06 10.81 -17.13 -0.19 1.88 16 26 C 0.12 1.48 3.43 -4.08 -0.01 1.47 16 27 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.10 2.81 5.88 -51.93 -0.31 2.51 16 29 H 0.01 0.29 7.76 -51.93 -0.40 -0.11 16 30 H 0.06 1.06 6.00 -51.93 -0.31 0.75 16 31 H 0.05 1.04 7.90 -51.93 -0.41 0.63 16 32 H 0.02 0.41 7.80 -51.93 -0.40 0.00 16 33 H 0.02 0.46 7.83 -51.93 -0.41 0.05 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 36 H 0.07 1.01 6.22 -51.93 -0.32 0.69 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.33 16 38 H 0.09 1.13 7.00 -51.93 -0.36 0.76 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.14 1.26 6.58 -52.49 -0.35 0.91 16 41 H 0.14 0.92 8.06 -52.48 -0.42 0.49 16 42 H 0.16 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 44 H 0.09 1.20 4.64 -51.93 -0.24 0.96 16 45 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 LS Contribution 348.25 15.07 5.25 5.25 Total: -1.00 -32.08 348.25 -9.27 -41.35 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -6.41 Total: 1.30 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -2.53 Total: 0.65 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.64 Total: -56.21 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.08 -9.27 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054072267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.805 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds