Wall clock time and date at job start Tue Mar 31 2020 10:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86801 * 120.00247 * 2 1 4 4 H 1.48498 * 109.47610 * 240.00300 * 3 2 1 5 5 H 1.48503 * 109.46876 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47017 * 119.99723 * 3 2 1 7 7 C 1.38818 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99723 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00134 * 0.02562 * 7 2 1 10 10 C 1.47478 * 125.66259 * 359.97034 * 9 7 2 11 11 C 1.55031 * 104.90566 * 204.03154 * 10 9 7 12 12 C 1.54498 * 101.51990 * 323.64716 * 11 10 9 13 13 C 1.47193 * 125.66009 * 180.02562 * 9 7 2 14 14 C 1.52246 * 110.24723 * 276.23243 * 12 11 10 15 15 C 1.53163 * 109.62455 * 297.03646 * 14 12 11 16 16 C 1.53189 * 109.27657 * 299.84084 * 15 14 12 17 17 N 1.46934 * 108.91720 * 55.23657 * 16 15 14 18 18 C 1.34773 * 120.69873 * 125.81298 * 17 16 15 19 19 O 1.21553 * 119.99995 * 354.18219 * 18 17 16 20 20 C 1.47842 * 119.99828 * 174.19068 * 18 17 16 21 21 C 1.40021 * 120.55701 * 320.49579 * 20 18 17 22 22 C 1.38359 * 118.28354 * 179.73787 * 21 20 18 23 23 C 1.38346 * 119.30592 * 0.51954 * 22 21 20 24 24 N 1.31921 * 121.07958 * 359.74367 * 23 22 21 25 25 C 1.31690 * 121.88195 * 359.97438 * 24 23 22 26 26 C 1.47079 * 118.59790 * 305.83183 * 17 16 15 27 27 H 0.96997 * 120.00089 * 0.02562 * 1 2 3 28 28 H 1.09002 * 110.35393 * 322.89110 * 10 9 7 29 29 H 1.09001 * 110.35493 * 85.06829 * 10 9 7 30 30 H 1.08995 * 111.01221 * 205.58412 * 11 10 9 31 31 H 1.08997 * 111.01356 * 81.70328 * 11 10 9 32 32 H 1.09004 * 109.91039 * 59.10455 * 13 9 7 33 33 H 1.08997 * 109.90743 * 297.83122 * 13 9 7 34 34 H 1.09000 * 109.43464 * 177.00392 * 14 12 11 35 35 H 1.08996 * 109.44044 * 57.07799 * 14 12 11 36 36 H 1.09001 * 109.50296 * 59.78214 * 15 14 12 37 37 H 1.09007 * 109.50149 * 179.90078 * 15 14 12 38 38 H 1.09001 * 109.56418 * 175.07049 * 16 15 14 39 39 H 1.08998 * 109.56297 * 295.40553 * 16 15 14 40 40 H 1.07999 * 120.85751 * 359.97438 * 21 20 18 41 41 H 1.08008 * 120.34586 * 180.25868 * 22 21 20 42 42 H 1.08003 * 119.46306 * 179.72036 * 23 22 21 43 43 H 1.08002 * 119.72248 * 179.97438 * 25 24 23 44 44 H 1.09001 * 109.57503 * 172.25418 * 26 17 16 45 45 H 1.09000 * 109.57573 * 292.63538 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1421 -2.5336 -0.0016 11 6 -0.4039 -3.9351 0.6072 12 6 0.7808 -4.7458 0.0359 13 6 1.9322 -3.7292 -0.0017 14 6 0.4527 -5.2417 -1.3656 15 6 -0.7429 -6.1972 -1.3065 16 6 -0.3919 -7.3919 -0.4143 17 7 0.0331 -6.8951 0.9016 18 6 -0.5604 -7.3366 2.0282 19 8 -1.5255 -8.0723 1.9586 20 6 -0.0375 -6.9261 3.3487 21 6 1.3419 -6.8375 3.5720 22 6 1.7794 -6.4432 4.8240 23 6 0.8494 -6.1625 5.8089 24 7 -0.4446 -6.2599 5.5714 25 6 -0.9102 -6.6256 4.3951 26 6 1.1195 -5.9056 0.9633 27 1 -0.4850 0.8400 -0.0004 28 1 -0.5997 -1.7605 0.6157 29 1 -0.5281 -2.4826 -1.0197 30 1 -1.3560 -4.3389 0.2632 31 1 -0.3657 -3.9016 1.6960 32 1 2.5639 -3.8509 0.8782 33 1 2.5218 -3.8697 -0.9076 34 1 1.3158 -5.7657 -1.7763 35 1 0.2071 -4.3922 -2.0028 36 1 -1.6058 -5.6751 -0.8929 37 1 -0.9772 -6.5495 -2.3111 38 1 -1.2677 -8.0304 -0.2980 39 1 0.4189 -7.9611 -0.8689 40 1 2.0462 -7.0672 2.7861 41 1 2.8361 -6.3597 5.0315 42 1 1.1882 -5.8589 6.7885 43 1 -1.9767 -6.6942 4.2391 44 1 1.2219 -5.5389 1.9846 45 1 2.0534 -6.3682 0.6440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054072267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:24 Heat of formation + Delta-G solvation = 17.762256 kcal Electronic energy + Delta-G solvation = -27382.814512 eV Core-core repulsion = 23786.269250 eV Total energy + Delta-G solvation = -3596.545261 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.08398 -40.76319 -39.61550 -37.23539 -34.80095 -34.27500 -32.93131 -32.25524 -31.66030 -30.37851 -27.40826 -27.09431 -25.39735 -25.01637 -24.52255 -23.13570 -22.02049 -20.90642 -19.68162 -18.83230 -18.37457 -17.95229 -17.53025 -16.95709 -16.84779 -16.34070 -16.14089 -15.65257 -15.51830 -14.92588 -14.78233 -14.71236 -14.63051 -14.23218 -14.12691 -14.07463 -13.76703 -13.42425 -13.18230 -13.11115 -12.90976 -12.75257 -12.42368 -12.21752 -12.11809 -11.90768 -11.67770 -11.56457 -11.32250 -11.22487 -11.17235 -10.76031 -10.71463 -10.47146 -10.20441 -9.64158 -8.86000 -7.75442 -5.19278 -0.27604 0.20505 1.47027 1.49906 1.56116 1.57121 1.91960 2.51050 2.78655 3.23051 3.34310 3.51835 3.62151 3.67479 3.72139 3.83154 3.88575 3.96845 4.07872 4.10963 4.25441 4.32640 4.38911 4.47434 4.52377 4.60963 4.67315 4.72670 4.79532 4.84744 4.89506 4.94782 4.96734 5.01646 5.05422 5.16574 5.19144 5.42065 5.45098 5.48351 5.52664 5.62040 5.62724 5.82903 6.24189 6.31536 6.87505 6.98336 7.11790 7.80975 8.45392 9.26459 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013379 B = 0.004508 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.337779 B = 6209.653935 C = 7492.625181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.070 4.070 3 Si 0.978 3.022 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.275 1.275 7 C -0.234 4.234 8 H 0.085 0.915 9 N -0.623 5.623 10 C 0.162 3.838 11 C -0.115 4.115 12 C -0.071 4.071 13 C 0.145 3.855 14 C -0.096 4.096 15 C -0.128 4.128 16 C 0.114 3.886 17 N -0.594 5.594 18 C 0.567 3.433 19 O -0.574 6.574 20 C -0.196 4.196 21 C -0.044 4.044 22 C -0.167 4.167 23 C 0.110 3.890 24 N -0.512 5.512 25 C 0.134 3.866 26 C 0.122 3.878 27 H 0.244 0.756 28 H 0.062 0.938 29 H -0.016 1.016 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.033 0.967 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.099 0.901 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.189 0.811 43 H 0.153 0.847 44 H 0.090 0.910 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.830 -17.246 4.380 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.262 4.262 3 Si 0.806 3.194 4 H -0.203 1.203 5 H -0.225 1.225 6 H -0.201 1.201 7 C -0.363 4.363 8 H 0.103 0.897 9 N -0.349 5.349 10 C 0.037 3.963 11 C -0.153 4.153 12 C -0.073 4.073 13 C 0.020 3.980 14 C -0.134 4.134 15 C -0.166 4.166 16 C -0.008 4.008 17 N -0.324 5.324 18 C 0.356 3.644 19 O -0.455 6.455 20 C -0.201 4.201 21 C -0.070 4.070 22 C -0.186 4.186 23 C -0.046 4.046 24 N -0.221 5.221 25 C -0.024 4.024 26 C 0.000 4.000 27 H 0.054 0.946 28 H 0.080 0.920 29 H 0.002 0.998 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.117 0.883 40 H 0.184 0.816 41 H 0.198 0.802 42 H 0.206 0.794 43 H 0.170 0.830 44 H 0.108 0.892 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.720 -17.238 4.985 18.555 hybrid contribution 0.337 1.329 -0.846 1.611 sum 5.057 -15.909 4.138 17.198 Atomic orbital electron populations 1.70081 1.06377 1.24876 1.58937 1.25624 0.96493 1.01040 1.03046 0.85157 0.77080 0.78872 0.78278 1.20333 1.22465 1.20127 1.19444 0.91099 0.83681 1.42034 0.89695 1.44778 1.02302 1.01048 1.86754 1.21596 0.84509 0.94241 0.95969 1.22775 0.97816 0.96247 0.98509 1.21263 0.95233 0.94144 0.96632 1.21372 0.94092 0.83980 0.98575 1.21326 0.99044 0.98520 0.94498 1.21937 0.97812 0.96004 1.00867 1.21754 1.01810 0.96132 0.81087 1.48046 1.36481 1.41800 1.06115 1.18313 0.82004 0.79758 0.84366 1.90745 1.27821 1.39364 1.87598 1.20895 0.96412 1.07525 0.95266 1.22204 0.93538 0.92553 0.98701 1.22550 1.03498 0.99799 0.92790 1.23622 0.87659 0.92147 1.01203 1.67761 1.18261 1.14093 1.22006 1.22856 1.00408 0.91798 0.87330 1.22024 0.89862 0.87565 1.00585 0.94609 0.92012 0.99819 0.91654 0.93622 0.94573 0.94949 0.89425 0.93716 0.93267 0.88461 0.89912 0.88329 0.81638 0.80246 0.79378 0.82992 0.89200 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.29 10.09 21.65 0.22 -57.07 16 2 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 3 Si 0.98 45.19 29.55 68.60 2.03 47.21 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.23 -12.72 10.28 84.04 0.86 -11.86 16 8 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 9 N -0.62 -30.84 3.40 -692.49 -2.36 -33.20 16 10 C 0.16 8.02 5.57 86.89 0.48 8.50 16 11 C -0.11 -4.33 5.73 31.80 0.18 -4.15 16 12 C -0.07 -2.12 0.55 -51.93 -0.03 -2.15 16 13 C 0.15 5.31 6.43 86.46 0.56 5.86 16 14 C -0.10 -2.52 4.55 30.40 0.14 -2.38 16 15 C -0.13 -2.88 5.90 30.71 0.18 -2.70 16 16 C 0.11 2.35 6.42 86.36 0.55 2.90 16 17 N -0.59 -13.95 2.82 -823.61 -2.33 -16.27 16 18 C 0.57 15.73 7.36 86.79 0.64 16.37 16 19 O -0.57 -19.58 16.35 -3.88 -0.06 -19.64 16 20 C -0.20 -4.88 5.15 -19.99 -0.10 -4.98 16 21 C -0.04 -0.80 7.52 22.73 0.17 -0.63 16 22 C -0.17 -2.54 10.10 22.32 0.23 -2.31 16 23 C 0.11 2.05 11.17 84.71 0.95 3.00 16 24 N -0.51 -13.18 10.35 -194.76 -2.01 -15.20 16 25 C 0.13 3.62 10.81 85.02 0.92 4.54 16 26 C 0.12 2.70 3.43 86.04 0.29 3.00 16 27 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 28 H 0.06 3.58 5.88 -2.39 -0.01 3.57 16 29 H -0.02 -0.87 7.76 -2.39 -0.02 -0.88 16 30 H 0.06 2.38 6.00 -2.39 -0.01 2.37 16 31 H 0.04 1.78 7.90 -2.39 -0.02 1.76 16 32 H 0.04 1.24 7.80 -2.39 -0.02 1.22 16 33 H 0.03 1.15 7.83 -2.39 -0.02 1.13 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.45 7.49 -2.39 -0.02 1.44 16 36 H 0.05 1.34 6.22 -2.39 -0.01 1.33 16 37 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.08 1.91 7.00 -2.39 -0.02 1.89 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.17 2.14 6.58 -2.91 -0.02 2.13 16 41 H 0.18 1.36 8.06 -2.91 -0.02 1.33 16 42 H 0.19 2.21 8.06 -2.91 -0.02 2.18 16 43 H 0.15 4.19 8.06 -2.91 -0.02 4.16 16 44 H 0.09 2.07 4.64 -2.39 -0.01 2.06 16 45 H 0.11 1.68 8.09 -2.39 -0.02 1.66 16 Total: -1.00 -73.67 348.25 2.97 -70.70 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 1.00 Total: 13.92 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.49 Total: 9.55 kcal Atomic # 7 Polarization: -115.26 SS G_CDS: -6.48 Total: -121.74 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.06 Total: -19.64 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -73.67 2.97 -70.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054072267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.460 kcal (2) G-P(sol) polarization free energy of solvation -73.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds