Wall clock time and date at job start Tue Mar 31 2020 10:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48500 * 109.47300 * 274.98253 * 3 2 1 5 5 H 1.48506 * 109.47202 * 34.98569 * 3 2 1 6 6 H 1.48506 * 109.46941 * 154.98192 * 3 2 1 7 7 C 1.38814 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99626 * 186.83658 * 7 2 1 9 9 N 1.36939 * 119.99790 * 6.83613 * 7 2 1 10 10 C 1.46707 * 125.31889 * 173.74044 * 9 7 2 11 11 C 1.54046 * 106.82629 * 161.79821 * 10 9 7 12 12 H 1.08995 * 113.43549 * 262.66848 * 11 10 9 13 13 C 1.55122 * 108.25565 * 135.80451 * 11 10 9 14 14 C 1.54853 * 101.77905 * 285.18498 * 13 11 10 15 15 N 1.47400 * 104.80884 * 322.81457 * 14 13 11 16 16 C 1.34775 * 125.58682 * 204.60606 * 15 14 13 17 17 O 1.21284 * 119.99994 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00107 * 0.02939 * 16 15 14 19 19 C 1.53009 * 109.47111 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47111 * 180.02562 * 19 18 16 21 21 C 1.38224 * 119.61665 * 125.00017 * 20 19 18 22 22 C 1.38632 * 119.16004 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.41690 * 0.02562 * 22 21 20 24 24 C 1.38182 * 119.16682 * 359.97438 * 23 22 21 25 25 N 1.31856 * 119.61534 * 304.97973 * 20 19 18 26 26 C 1.46728 * 108.82377 * 24.87396 * 15 14 13 27 27 H 1.08996 * 111.32932 * 235.86232 * 26 15 14 28 28 C 1.46630 * 125.32447 * 353.71597 * 9 7 2 29 29 H 0.96995 * 120.00228 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.98601 * 42.45423 * 10 9 7 31 31 H 1.09001 * 110.01819 * 281.15626 * 10 9 7 32 32 H 1.09004 * 110.96551 * 167.06357 * 13 11 10 33 33 H 1.08997 * 111.00090 * 43.32407 * 13 11 10 34 34 H 1.09006 * 110.36939 * 203.98486 * 14 13 11 35 35 H 1.08996 * 110.37261 * 81.65232 * 14 13 11 36 36 H 1.08994 * 109.47372 * 60.00101 * 18 16 15 37 37 H 1.08995 * 109.47423 * 299.99746 * 18 16 15 38 38 H 1.09003 * 109.46965 * 60.00010 * 19 18 16 39 39 H 1.08995 * 109.47002 * 300.00289 * 19 18 16 40 40 H 1.07992 * 120.41852 * 0.02562 * 21 20 19 41 41 H 1.07993 * 120.78752 * 179.97438 * 22 21 20 42 42 H 1.08010 * 120.41448 * 179.72420 * 23 22 21 43 43 H 1.07996 * 119.61451 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.75619 * 300.95206 * 28 9 7 45 45 H 1.09001 * 109.76012 * 61.64727 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0846 -1.2053 0.1119 9 7 1.3329 -2.3839 -0.1401 10 6 1.9536 -3.7052 -0.2857 11 6 0.8693 -4.7467 0.0498 12 1 0.9205 -5.1106 1.0759 13 6 0.9364 -5.8770 -1.0105 14 6 0.2937 -5.1934 -2.2424 15 7 -0.7866 -4.3575 -1.6885 16 6 -1.8874 -3.9559 -2.3543 17 8 -2.7152 -3.2663 -1.7974 18 6 -2.0898 -4.3639 -3.7909 19 6 -3.4074 -3.7807 -4.3059 20 6 -3.6101 -4.1892 -5.7422 21 6 -4.7732 -4.8392 -6.1099 22 6 -4.9501 -5.2102 -7.4339 23 6 -3.9456 -4.9125 -8.3425 24 6 -2.8101 -4.2603 -7.9013 25 7 -2.6760 -3.9219 -6.6337 26 6 -0.4640 -4.0288 -0.2953 27 1 -1.2640 -4.3333 0.3794 28 6 -0.1262 -2.5266 -0.1682 29 1 -0.4850 0.8400 -0.0004 30 1 2.7902 -3.8021 0.4062 31 1 2.2994 -3.8442 -1.3100 32 1 0.3528 -6.7421 -0.6958 33 1 1.9690 -6.1593 -1.2156 34 1 -0.1157 -5.9418 -2.9210 35 1 1.0270 -4.5733 -2.7578 36 1 -2.1232 -5.4512 -3.8586 37 1 -1.2647 -3.9873 -4.3952 38 1 -3.3745 -2.6933 -4.2381 39 1 -4.2324 -4.1576 -3.7014 40 1 -5.5348 -5.0547 -5.3752 41 1 -5.8483 -5.7196 -7.7500 42 1 -4.0478 -5.1907 -9.3811 43 1 -2.0232 -4.0253 -8.6026 44 1 -0.5520 -2.1408 0.7581 45 1 -0.5338 -1.9782 -1.0174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076123349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:32 Heat of formation + Delta-G solvation = 31.339632 kcal Electronic energy + Delta-G solvation = -26299.479615 eV Core-core repulsion = 22703.523113 eV Total energy + Delta-G solvation = -3595.956502 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43702 -39.98363 -37.84300 -34.71153 -34.08636 -32.51413 -32.12783 -30.78223 -30.27138 -28.63237 -26.44000 -25.13993 -24.59062 -23.66034 -22.50889 -21.56576 -20.48782 -19.50363 -18.35203 -17.28844 -16.81762 -16.57634 -16.32312 -15.75575 -15.38246 -15.23106 -14.62841 -14.33432 -14.02412 -13.76464 -13.52403 -13.46468 -13.03845 -12.99673 -12.63187 -12.45224 -12.06929 -11.95073 -11.81249 -11.63194 -11.46745 -11.06523 -11.04474 -10.95432 -10.68975 -10.40913 -10.19414 -10.08613 -10.06217 -9.79623 -9.63476 -9.55332 -9.32613 -9.07373 -8.50529 -8.06563 -6.73816 -5.62668 -2.97606 0.92566 1.09565 3.13614 3.42138 3.45399 3.49780 3.52651 3.65663 4.15504 4.50301 4.55124 4.63855 4.79988 4.84526 4.87455 4.92763 5.11377 5.14123 5.25625 5.28324 5.44712 5.52618 5.56477 5.58866 5.61602 5.73710 5.80718 5.83744 5.85982 5.91699 5.97692 6.07072 6.14567 6.17003 6.29002 6.38055 6.53374 6.54055 6.64233 6.70388 6.93824 7.60165 7.75850 7.86566 7.96948 8.07962 8.36196 8.69484 9.29827 9.91100 10.55389 11.47487 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.003385 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.214704 B = 8270.106625 C = 9272.770763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.235 4.235 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.143 3.857 11 C -0.111 4.111 12 H 0.095 0.905 13 C -0.124 4.124 14 C 0.102 3.898 15 N -0.604 5.604 16 C 0.526 3.474 17 O -0.534 6.534 18 C -0.123 4.123 19 C -0.056 4.056 20 C 0.138 3.862 21 C -0.171 4.171 22 C -0.075 4.075 23 C -0.185 4.185 24 C 0.103 3.897 25 N -0.480 5.480 26 C 0.113 3.887 27 H 0.078 0.922 28 C 0.178 3.822 29 H 0.253 0.747 30 H 0.033 0.967 31 H 0.019 0.981 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.155 0.845 44 H 0.045 0.955 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -16.381 -13.166 21.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.363 4.363 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.017 3.983 11 C -0.131 4.131 12 H 0.114 0.886 13 C -0.163 4.163 14 C -0.021 4.021 15 N -0.338 5.338 16 C 0.315 3.685 17 O -0.411 6.411 18 C -0.164 4.164 19 C -0.094 4.094 20 C 0.000 4.000 21 C -0.191 4.191 22 C -0.101 4.101 23 C -0.205 4.205 24 C -0.055 4.055 25 N -0.189 5.189 26 C 0.010 3.990 27 H 0.096 0.904 28 C 0.052 3.948 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.036 0.964 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.105 0.895 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.172 0.828 44 H 0.063 0.937 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.284 -15.315 -12.617 20.814 hybrid contribution -0.256 0.417 -0.469 0.678 sum -6.540 -14.897 -13.086 20.879 Atomic orbital electron populations 1.70008 1.04799 1.25077 1.55979 1.24864 0.95666 0.97686 1.01990 0.86151 0.78626 0.83815 0.77474 1.21653 1.21778 1.20664 1.19001 0.90999 0.82475 1.43813 0.90459 1.44203 1.01465 1.01173 1.86067 1.21292 0.93807 0.85740 0.97505 1.23151 0.95918 0.95247 0.98790 0.88640 1.22753 1.01043 0.97424 0.95041 1.22297 0.89992 0.93398 0.96461 1.48401 1.20467 1.51522 1.13460 1.20144 0.80419 0.79952 0.88026 1.90727 1.43378 1.37531 1.69485 1.21497 0.99626 1.01747 0.93510 1.20321 0.97777 1.03000 0.88286 1.21398 0.89693 0.92948 0.95947 1.22035 0.99114 1.00746 0.97169 1.21581 0.98640 0.96743 0.93122 1.22123 0.95665 1.01771 1.00921 1.22793 0.96495 0.93830 0.92341 1.67534 1.30714 1.18265 1.02389 1.22789 0.95533 0.99117 0.81583 0.90386 1.21389 0.84192 0.87436 1.01735 0.93673 0.94884 0.96389 0.91186 0.90032 0.91334 0.91080 0.89768 0.88095 0.88740 0.89506 0.84677 0.84978 0.85005 0.82788 0.93661 0.92413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.26 10.29 55.49 0.57 -27.69 16 2 C 0.00 -0.15 5.48 -17.43 -0.10 -0.24 16 3 Si 0.91 22.84 29.56 -169.99 -5.02 17.81 16 4 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.23 -6.73 10.24 -15.06 -0.15 -6.88 16 8 H 0.08 2.13 7.84 -52.49 -0.41 1.71 16 9 N -0.60 -15.80 3.38 -171.39 -0.58 -16.38 16 10 C 0.14 2.92 6.46 -3.38 -0.02 2.90 16 11 C -0.11 -1.87 4.28 -87.73 -0.38 -2.24 16 12 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 13 C -0.12 -1.57 6.34 -24.63 -0.16 -1.73 16 14 C 0.10 1.42 6.24 -2.57 -0.02 1.41 16 15 N -0.60 -10.81 2.98 -161.81 -0.48 -11.30 16 16 C 0.53 9.72 7.42 -10.99 -0.08 9.63 16 17 O -0.53 -11.99 15.96 5.55 0.09 -11.90 16 18 C -0.12 -1.73 4.55 -27.88 -0.13 -1.86 16 19 C -0.06 -0.75 4.90 -27.88 -0.14 -0.89 16 20 C 0.14 1.68 6.18 -82.59 -0.51 1.17 16 21 C -0.17 -1.67 9.71 -39.44 -0.38 -2.05 16 22 C -0.07 -0.61 10.18 -39.28 -0.40 -1.01 16 23 C -0.18 -1.50 10.11 -39.44 -0.40 -1.90 16 24 C 0.10 1.03 11.18 -17.55 -0.20 0.83 16 25 N -0.48 -6.19 9.88 -9.48 -0.09 -6.28 16 26 C 0.11 2.27 3.66 -65.80 -0.24 2.03 16 27 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 28 C 0.18 4.62 4.95 -3.19 -0.02 4.60 16 29 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.37 6.59 -51.93 -0.34 0.03 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.07 0.76 7.45 -51.93 -0.39 0.37 16 35 H 0.07 1.08 7.24 -51.93 -0.38 0.70 16 36 H 0.08 0.98 7.84 -51.93 -0.41 0.57 16 37 H 0.10 1.47 7.95 -51.93 -0.41 1.05 16 38 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 39 H 0.09 1.08 7.83 -51.93 -0.41 0.67 16 40 H 0.14 1.06 7.95 -52.49 -0.42 0.65 16 41 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 42 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 44 H 0.05 1.32 7.50 -51.93 -0.39 0.93 16 45 H 0.06 1.73 6.65 -51.93 -0.35 1.39 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -35.63 361.31 -10.21 -45.84 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -6.83 Total: 0.69 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -3.31 Total: 3.76 kcal Atomic # 7 Polarization: -61.07 SS G_CDS: -0.58 Total: -61.65 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.63 -10.21 -45.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076123349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.181 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds