Wall clock time and date at job start Tue Mar 31 2020 10:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99855 * 2 1 4 4 H 1.48500 * 109.47300 * 274.98253 * 3 2 1 5 5 H 1.48506 * 109.47202 * 34.98569 * 3 2 1 6 6 H 1.48506 * 109.46941 * 154.98192 * 3 2 1 7 7 C 1.38814 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99626 * 186.83658 * 7 2 1 9 9 N 1.36939 * 119.99790 * 6.83613 * 7 2 1 10 10 C 1.46707 * 125.31889 * 173.74044 * 9 7 2 11 11 C 1.54046 * 106.82629 * 161.79821 * 10 9 7 12 12 H 1.08995 * 113.43549 * 262.66848 * 11 10 9 13 13 C 1.55122 * 108.25565 * 135.80451 * 11 10 9 14 14 C 1.54853 * 101.77905 * 285.18498 * 13 11 10 15 15 N 1.47400 * 104.80884 * 322.81457 * 14 13 11 16 16 C 1.34775 * 125.58682 * 204.60606 * 15 14 13 17 17 O 1.21284 * 119.99994 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00107 * 0.02939 * 16 15 14 19 19 C 1.53009 * 109.47111 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47111 * 180.02562 * 19 18 16 21 21 C 1.38224 * 119.61665 * 125.00017 * 20 19 18 22 22 C 1.38632 * 119.16004 * 179.97438 * 21 20 19 23 23 C 1.38674 * 118.41690 * 0.02562 * 22 21 20 24 24 C 1.38182 * 119.16682 * 359.97438 * 23 22 21 25 25 N 1.31856 * 119.61534 * 304.97973 * 20 19 18 26 26 C 1.46728 * 108.82377 * 24.87396 * 15 14 13 27 27 H 1.08996 * 111.32932 * 235.86232 * 26 15 14 28 28 C 1.46630 * 125.32447 * 353.71597 * 9 7 2 29 29 H 0.96995 * 120.00228 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.98601 * 42.45423 * 10 9 7 31 31 H 1.09001 * 110.01819 * 281.15626 * 10 9 7 32 32 H 1.09004 * 110.96551 * 167.06357 * 13 11 10 33 33 H 1.08997 * 111.00090 * 43.32407 * 13 11 10 34 34 H 1.09006 * 110.36939 * 203.98486 * 14 13 11 35 35 H 1.08996 * 110.37261 * 81.65232 * 14 13 11 36 36 H 1.08994 * 109.47372 * 60.00101 * 18 16 15 37 37 H 1.08995 * 109.47423 * 299.99746 * 18 16 15 38 38 H 1.09003 * 109.46965 * 60.00010 * 19 18 16 39 39 H 1.08995 * 109.47002 * 300.00289 * 19 18 16 40 40 H 1.07992 * 120.41852 * 0.02562 * 21 20 19 41 41 H 1.07993 * 120.78752 * 179.97438 * 22 21 20 42 42 H 1.08010 * 120.41448 * 179.72420 * 23 22 21 43 43 H 1.07996 * 119.61451 * 179.97438 * 24 23 22 44 44 H 1.09003 * 109.75619 * 300.95206 * 28 9 7 45 45 H 1.09001 * 109.76012 * 61.64727 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5965 1.4121 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0846 -1.2053 0.1119 9 7 1.3329 -2.3839 -0.1401 10 6 1.9536 -3.7052 -0.2857 11 6 0.8693 -4.7467 0.0498 12 1 0.9205 -5.1106 1.0759 13 6 0.9364 -5.8770 -1.0105 14 6 0.2937 -5.1934 -2.2424 15 7 -0.7866 -4.3575 -1.6885 16 6 -1.8874 -3.9559 -2.3543 17 8 -2.7152 -3.2663 -1.7974 18 6 -2.0898 -4.3639 -3.7909 19 6 -3.4074 -3.7807 -4.3059 20 6 -3.6101 -4.1892 -5.7422 21 6 -4.7732 -4.8392 -6.1099 22 6 -4.9501 -5.2102 -7.4339 23 6 -3.9456 -4.9125 -8.3425 24 6 -2.8101 -4.2603 -7.9013 25 7 -2.6760 -3.9219 -6.6337 26 6 -0.4640 -4.0288 -0.2953 27 1 -1.2640 -4.3333 0.3794 28 6 -0.1262 -2.5266 -0.1682 29 1 -0.4850 0.8400 -0.0004 30 1 2.7902 -3.8021 0.4062 31 1 2.2994 -3.8442 -1.3100 32 1 0.3528 -6.7421 -0.6958 33 1 1.9690 -6.1593 -1.2156 34 1 -0.1157 -5.9418 -2.9210 35 1 1.0270 -4.5733 -2.7578 36 1 -2.1232 -5.4512 -3.8586 37 1 -1.2647 -3.9873 -4.3952 38 1 -3.3745 -2.6933 -4.2381 39 1 -4.2324 -4.1576 -3.7014 40 1 -5.5348 -5.0547 -5.3752 41 1 -5.8483 -5.7196 -7.7500 42 1 -4.0478 -5.1907 -9.3811 43 1 -2.0232 -4.0253 -8.6026 44 1 -0.5520 -2.1408 0.7581 45 1 -0.5338 -1.9782 -1.0174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076123349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:31 Heat of formation + Delta-G solvation = 7.684094 kcal Electronic energy + Delta-G solvation = -26300.505396 eV Core-core repulsion = 22703.523113 eV Total energy + Delta-G solvation = -3596.982283 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.61345 -41.05247 -39.37683 -36.52621 -35.10658 -33.94137 -33.24707 -32.42864 -31.36222 -30.25874 -28.01669 -26.69500 -26.12295 -24.38979 -23.72289 -22.77580 -22.13318 -20.91643 -19.82534 -18.93358 -18.28779 -17.65629 -17.15596 -16.99446 -16.90419 -16.41116 -16.10523 -15.79648 -15.52882 -15.09762 -14.76138 -14.63237 -14.37143 -14.08745 -13.97668 -13.77473 -13.67644 -13.33661 -13.04562 -12.98820 -12.84699 -12.81641 -12.49725 -12.39709 -12.18311 -12.09833 -11.90233 -11.83608 -11.56618 -11.39528 -10.88035 -10.77158 -10.69248 -10.31216 -9.87182 -9.58162 -8.90542 -7.86569 -5.24221 0.19164 0.40972 1.40468 1.43961 1.53017 1.67654 2.09178 2.46580 2.88131 3.27803 3.30620 3.45763 3.58922 3.72866 3.81299 3.87627 3.99279 4.06708 4.15579 4.18613 4.26783 4.28858 4.34335 4.45073 4.52578 4.55029 4.65856 4.72645 4.75633 4.85016 4.88228 4.92992 4.96838 5.07843 5.14350 5.18666 5.30031 5.31149 5.31619 5.39369 5.44976 5.63065 5.80034 5.84051 6.17426 6.65318 7.06078 7.10710 7.24645 7.77585 8.40093 9.22245 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.003385 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.214704 B = 8270.106625 C = 9272.770763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.072 4.072 3 Si 0.979 3.021 4 H -0.290 1.290 5 H -0.297 1.297 6 H -0.259 1.259 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.624 5.624 10 C 0.135 3.865 11 C -0.099 4.099 12 H 0.116 0.884 13 C -0.105 4.105 14 C 0.094 3.906 15 N -0.607 5.607 16 C 0.515 3.485 17 O -0.588 6.588 18 C -0.105 4.105 19 C -0.050 4.050 20 C 0.114 3.886 21 C -0.173 4.173 22 C -0.073 4.073 23 C -0.174 4.174 24 C 0.085 3.915 25 N -0.516 5.516 26 C 0.116 3.884 27 H 0.076 0.924 28 C 0.195 3.805 29 H 0.242 0.758 30 H 0.045 0.955 31 H 0.030 0.970 32 H 0.100 0.900 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.057 0.943 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.172 0.828 44 H -0.007 1.007 45 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.390 -19.961 -15.185 25.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.265 4.265 3 Si 0.807 3.193 4 H -0.217 1.217 5 H -0.224 1.224 6 H -0.183 1.183 7 C -0.372 4.372 8 H 0.107 0.893 9 N -0.351 5.351 10 C 0.010 3.990 11 C -0.118 4.118 12 H 0.135 0.865 13 C -0.143 4.143 14 C -0.028 4.028 15 N -0.340 5.340 16 C 0.305 3.695 17 O -0.468 6.468 18 C -0.145 4.145 19 C -0.089 4.089 20 C -0.023 4.023 21 C -0.193 4.193 22 C -0.099 4.099 23 C -0.193 4.193 24 C -0.072 4.072 25 N -0.227 5.227 26 C 0.011 3.989 27 H 0.094 0.906 28 C 0.069 3.931 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.127 0.873 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.110 0.890 40 H 0.168 0.832 41 H 0.183 0.817 42 H 0.183 0.817 43 H 0.190 0.810 44 H 0.012 0.988 45 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -5.146 -18.959 -14.652 24.507 hybrid contribution -0.580 1.526 0.099 1.636 sum -5.726 -17.433 -14.553 23.420 Atomic orbital electron populations 1.70308 1.06682 1.25020 1.57945 1.25810 0.96470 1.01567 1.02622 0.85042 0.78063 0.79001 0.77161 1.21680 1.22397 1.18315 1.19498 0.91724 0.83733 1.42220 0.89293 1.44524 1.01814 1.02943 1.85780 1.21595 0.95137 0.83924 0.98301 1.23148 0.91611 0.95552 1.01507 0.86547 1.22794 1.03316 0.96266 0.91891 1.22619 0.88745 0.93519 0.97889 1.48534 1.21155 1.51579 1.12689 1.21059 0.79924 0.78955 0.89536 1.90695 1.45413 1.39782 1.70920 1.21416 0.99678 1.03667 0.89738 1.20179 0.97782 1.00714 0.90191 1.21162 0.91167 0.95091 0.94890 1.22233 0.98369 1.00060 0.98632 1.22013 0.99731 0.95983 0.92193 1.22509 0.94448 0.99825 1.02529 1.23216 0.98071 0.94248 0.91655 1.67429 1.31860 1.19532 1.03838 1.22512 0.97573 0.95266 0.83507 0.90571 1.20933 0.84142 0.91183 0.96840 0.94832 0.93725 0.95231 0.88108 0.87029 0.87278 0.92431 0.86275 0.88602 0.92441 0.88996 0.83172 0.81653 0.81683 0.81044 0.98842 0.97873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -63.10 10.29 21.65 0.22 -62.88 16 2 C -0.07 -4.39 5.48 84.86 0.46 -3.92 16 3 Si 0.98 48.60 29.56 68.60 2.03 50.63 16 4 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 5 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 6 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.24 -14.28 10.24 84.03 0.86 -13.42 16 8 H 0.09 4.89 7.84 -2.91 -0.02 4.87 16 9 N -0.62 -33.75 3.38 -696.17 -2.35 -36.10 16 10 C 0.14 5.35 6.46 86.69 0.56 5.91 16 11 C -0.10 -3.09 4.28 -8.92 -0.04 -3.12 16 12 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 13 C -0.10 -2.15 6.34 31.95 0.20 -1.95 16 14 C 0.09 2.35 6.24 86.84 0.54 2.89 16 15 N -0.61 -21.72 2.98 -784.24 -2.34 -24.06 16 16 C 0.51 19.79 7.42 87.66 0.65 20.44 16 17 O -0.59 -28.50 15.96 -3.04 -0.05 -28.55 16 18 C -0.11 -2.97 4.55 29.85 0.14 -2.83 16 19 C -0.05 -1.43 4.90 29.85 0.15 -1.28 16 20 C 0.11 2.76 6.18 42.55 0.26 3.03 16 21 C -0.17 -3.11 9.71 22.36 0.22 -2.90 16 22 C -0.07 -0.97 10.18 22.47 0.23 -0.74 16 23 C -0.17 -2.27 10.11 22.36 0.23 -2.04 16 24 C 0.09 1.57 11.18 84.67 0.95 2.51 16 25 N -0.52 -13.22 9.88 -183.89 -1.82 -15.04 16 26 C 0.12 4.75 3.66 46.25 0.17 4.91 16 27 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 28 C 0.20 10.85 4.95 86.86 0.43 11.28 16 29 H 0.24 15.80 8.31 -92.71 -0.77 15.03 16 30 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 1.13 6.59 -2.39 -0.02 1.12 16 32 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 33 H 0.11 1.75 8.07 -2.39 -0.02 1.73 16 34 H 0.11 1.90 7.45 -2.38 -0.02 1.89 16 35 H 0.06 1.62 7.24 -2.39 -0.02 1.60 16 36 H 0.12 2.50 7.84 -2.39 -0.02 2.49 16 37 H 0.10 2.83 7.95 -2.39 -0.02 2.81 16 38 H 0.06 2.00 8.10 -2.39 -0.02 1.98 16 39 H 0.09 2.42 7.83 -2.39 -0.02 2.40 16 40 H 0.15 2.11 7.95 -2.91 -0.02 2.09 16 41 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 42 H 0.17 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 44 H -0.01 -0.42 7.50 -2.39 -0.02 -0.44 16 45 H 0.00 0.20 6.65 -2.39 -0.02 0.19 16 Total: -1.00 -87.20 361.31 2.67 -84.53 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.98 Total: 12.70 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: 6.00 Total: 18.76 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -6.29 Total: -138.07 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 48.60 SS G_CDS: 2.03 Total: 50.63 kcal Total: -87.20 2.67 -84.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076123349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.210 kcal (2) G-P(sol) polarization free energy of solvation -87.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds