Wall clock time and date at job start Tue Mar 31 2020 11:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00124 * 2 1 4 4 H 1.48498 * 109.47343 * 240.00247 * 3 2 1 5 5 H 1.48503 * 109.46944 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47341 * 119.99586 * 3 2 1 7 7 C 1.38817 * 119.99971 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99943 * 194.47902 * 7 2 1 9 9 N 1.36930 * 119.99872 * 14.47724 * 7 2 1 10 10 C 1.46541 * 119.73838 * 205.18330 * 9 7 2 11 11 C 1.53146 * 108.25090 * 236.44524 * 10 9 7 12 12 C 1.53056 * 109.21239 * 301.58520 * 11 10 9 13 13 H 1.09007 * 113.84685 * 274.47839 * 12 11 10 14 14 C 1.54083 * 111.39035 * 142.39967 * 12 11 10 15 15 N 1.47280 * 87.60788 * 273.97167 * 14 12 11 16 16 C 1.34782 * 136.54358 * 151.35945 * 15 14 12 17 17 O 1.21629 * 120.00008 * 180.02562 * 16 15 14 18 18 C 1.47268 * 119.99880 * 0.02562 * 16 15 14 19 19 C 1.46678 * 126.94029 * 359.97438 * 18 16 15 20 20 C 1.34490 * 106.33077 * 179.77200 * 19 18 16 21 21 N 1.36446 * 108.85376 * 0.36484 * 20 19 18 22 22 H 0.97003 * 124.84730 * 179.87954 * 21 20 19 23 23 C 1.34654 * 110.29854 * 359.61692 * 21 20 19 24 24 C 1.50698 * 125.80167 * 180.23015 * 23 21 20 25 25 C 1.53005 * 117.50038 * 8.71847 * 24 23 21 26 26 C 1.53002 * 117.50023 * 300.06025 * 24 23 21 27 27 C 1.46467 * 86.91507 * 331.62274 * 15 14 12 28 28 H 1.09000 * 111.43645 * 276.12441 * 27 15 14 29 29 C 1.45693 * 119.74135 * 25.20206 * 9 7 2 30 30 H 0.97002 * 120.00163 * 359.97438 * 1 2 3 31 31 H 1.08997 * 109.70769 * 116.75285 * 10 9 7 32 32 H 1.09006 * 109.74178 * 356.15167 * 10 9 7 33 33 H 1.09010 * 109.50925 * 181.66613 * 11 10 9 34 34 H 1.09002 * 109.55759 * 61.53822 * 11 10 9 35 35 H 1.09007 * 113.52915 * 159.28629 * 14 12 11 36 36 H 1.09002 * 113.59356 * 28.66669 * 14 12 11 37 37 H 1.07996 * 126.83891 * 359.97438 * 19 18 16 38 38 H 1.08003 * 125.57302 * 180.20791 * 20 19 18 39 39 H 1.08999 * 115.55600 * 154.39255 * 24 23 21 40 40 H 1.09000 * 117.49581 * 0.02562 * 25 24 23 41 41 H 1.08999 * 117.49979 * 145.01919 * 25 24 23 42 42 H 1.08993 * 117.50352 * 214.97612 * 26 24 23 43 43 H 1.09002 * 117.49726 * 359.97438 * 26 24 23 44 44 H 1.08997 * 108.79502 * 260.87738 * 29 9 7 45 45 H 1.09001 * 108.78796 * 19.09197 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0646 -1.2169 0.2344 9 7 1.3582 -2.3693 -0.2954 10 6 1.8762 -3.6412 0.2160 11 6 2.1195 -4.5733 -0.9745 12 6 0.8074 -4.7681 -1.7381 13 1 0.1777 -5.5624 -1.3369 14 6 1.0463 -4.8307 -3.2590 15 7 0.9706 -3.3598 -3.2691 16 6 1.4834 -2.3589 -4.0119 17 8 1.2136 -1.2034 -3.7446 18 6 2.3704 -2.6642 -5.1472 19 6 2.7944 -3.9927 -5.6021 20 6 3.5916 -3.7913 -6.6663 21 7 3.6949 -2.4497 -6.8923 22 1 4.2163 -2.0459 -7.6037 23 6 2.9651 -1.7664 -5.9902 24 6 2.8271 -0.2674 -5.9213 25 6 3.4071 0.5494 -7.0778 26 6 4.1033 0.5508 -5.7146 27 6 0.0918 -3.4760 -2.1032 28 1 -0.9407 -3.6608 -2.3995 29 6 0.1551 -2.3369 -1.1165 30 1 -0.4850 0.8400 0.0004 31 1 1.1477 -4.0899 0.8913 32 1 2.8129 -3.4706 0.7466 33 1 2.4779 -5.5378 -0.6144 34 1 2.8644 -4.1324 -1.6370 35 1 0.2363 -5.3118 -3.8073 36 1 2.0283 -5.2178 -3.5309 37 1 2.5184 -4.9434 -5.1706 38 1 4.0736 -4.5650 -7.2457 39 1 1.9130 0.0997 -5.4548 40 1 3.8881 0.0024 -7.8887 41 1 2.8747 1.4539 -7.3719 42 1 4.0287 1.4563 -5.1125 43 1 5.0427 0.0048 -5.6280 44 1 -0.7167 -2.3863 -0.4642 45 1 0.1286 -1.3944 -1.6634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084614064.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:20 Heat of formation + Delta-G solvation = 89.063765 kcal Electronic energy + Delta-G solvation = -27686.435825 eV Core-core repulsion = 24092.982429 eV Total energy + Delta-G solvation = -3593.453396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35325 -41.57690 -38.73855 -37.82393 -36.99131 -33.95692 -32.29684 -31.86212 -30.25800 -29.94892 -28.55531 -25.68374 -25.03432 -23.74354 -23.43032 -22.95789 -22.40833 -21.32042 -20.32777 -19.38129 -18.81658 -17.92503 -17.26883 -16.94112 -16.53500 -16.42253 -16.09224 -15.62312 -15.33860 -15.15088 -14.95281 -14.69477 -14.46576 -14.20104 -13.96927 -13.88690 -13.51345 -13.22130 -13.11777 -12.96342 -12.69296 -12.64783 -12.58267 -12.21270 -12.19478 -11.95509 -11.73213 -11.67356 -11.45058 -11.43724 -11.00764 -10.62577 -10.25698 -9.79301 -9.39050 -8.97200 -8.64254 -7.82907 -5.25926 0.77607 1.32730 1.41193 1.44757 1.60136 2.03517 2.42364 2.49341 2.65103 2.93384 3.32404 3.49001 3.52405 3.75953 3.78479 3.86153 3.99483 4.05068 4.23146 4.23598 4.35886 4.47012 4.54795 4.58201 4.64657 4.67401 4.73494 4.80176 4.82493 4.86759 4.94011 4.99580 5.05735 5.08333 5.11082 5.16284 5.29807 5.36532 5.50519 5.57231 5.75173 5.81630 5.87057 6.04034 6.42256 6.67210 7.14846 7.21925 7.58207 7.99284 8.37817 9.21376 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.006488 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.240461 B = 4314.558560 C = 6180.453909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.045 4.045 3 Si 0.955 3.045 4 H -0.293 1.293 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.255 4.255 8 H 0.056 0.944 9 N -0.601 5.601 10 C 0.139 3.861 11 C -0.103 4.103 12 C -0.101 4.101 13 H 0.132 0.868 14 C 0.110 3.890 15 N -0.634 5.634 16 C 0.596 3.404 17 O -0.592 6.592 18 C -0.250 4.250 19 C -0.187 4.187 20 C 0.007 3.993 21 N -0.536 5.536 22 H 0.429 0.571 23 C 0.121 3.879 24 C -0.121 4.121 25 C -0.143 4.143 26 C -0.173 4.173 27 C 0.106 3.894 28 H 0.082 0.918 29 C 0.181 3.819 30 H 0.243 0.757 31 H 0.028 0.972 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.038 0.962 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.164 0.836 38 H 0.218 0.782 39 H 0.096 0.904 40 H 0.122 0.878 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.104 0.896 44 H -0.007 1.007 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 -13.847 -17.505 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.240 4.240 3 Si 0.784 3.216 4 H -0.220 1.220 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.385 4.385 8 H 0.074 0.926 9 N -0.324 5.324 10 C 0.014 3.986 11 C -0.142 4.142 12 C -0.120 4.120 13 H 0.150 0.850 14 C -0.011 4.011 15 N -0.369 5.369 16 C 0.390 3.610 17 O -0.475 6.475 18 C -0.260 4.260 19 C -0.211 4.211 20 C -0.121 4.121 21 N -0.133 5.133 22 H 0.269 0.731 23 C 0.002 3.998 24 C -0.141 4.141 25 C -0.180 4.180 26 C -0.210 4.210 27 C 0.001 3.999 28 H 0.100 0.900 29 C 0.054 3.946 30 H 0.052 0.948 31 H 0.046 0.954 32 H 0.068 0.932 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.181 0.819 38 H 0.235 0.765 39 H 0.114 0.886 40 H 0.140 0.860 41 H 0.129 0.871 42 H 0.106 0.894 43 H 0.122 0.878 44 H 0.010 0.990 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.244 -12.932 -17.599 23.343 hybrid contribution -0.041 1.933 0.299 1.956 sum 8.202 -10.999 -17.300 22.080 Atomic orbital electron populations 1.70175 1.06418 1.25065 1.56328 1.25589 0.95991 1.00945 1.01451 0.85523 0.77846 0.80424 0.77828 1.22036 1.21878 1.19179 1.19320 0.91610 0.86337 1.41245 0.92594 1.43671 1.29662 1.02483 1.56576 1.20971 0.96914 0.86109 0.94589 1.21703 0.95448 0.99919 0.97094 1.22742 0.97766 0.95758 0.95751 0.85040 1.23563 1.03657 0.78844 0.95086 1.49289 1.48907 1.08030 1.30629 1.17474 0.79588 0.83019 0.80955 1.90767 1.63496 1.21721 1.71469 1.20207 1.09045 0.95746 1.00980 1.22448 1.03407 0.95715 0.99499 1.22396 1.04203 0.84516 1.00962 1.41409 1.38961 1.06746 1.26174 0.73056 1.19142 0.96362 0.91852 0.92415 1.20619 0.99732 0.87249 1.06461 1.23153 1.02005 1.01937 0.90879 1.23039 0.95499 1.01668 1.00811 1.22485 0.94610 0.96766 0.86019 0.89978 1.19764 0.87331 0.96856 0.90617 0.94771 0.95395 0.93212 0.88065 0.94352 0.87300 0.88596 0.81851 0.76503 0.88563 0.85968 0.87081 0.89386 0.87796 0.98951 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -62.16 10.94 21.65 0.24 -61.93 16 2 C -0.04 -2.85 4.94 84.86 0.42 -2.43 16 3 Si 0.95 51.87 29.58 68.60 2.03 53.90 16 4 H -0.29 -16.20 7.11 99.48 0.71 -15.49 16 5 H -0.29 -15.77 7.11 99.48 0.71 -15.07 16 6 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 7 C -0.25 -15.81 9.53 84.04 0.80 -15.01 16 8 H 0.06 3.42 7.83 -2.91 -0.02 3.40 16 9 N -0.60 -33.22 3.03 -707.76 -2.14 -35.36 16 10 C 0.14 5.97 6.46 86.42 0.56 6.53 16 11 C -0.10 -3.34 5.69 30.66 0.17 -3.16 16 12 C -0.10 -2.96 4.57 -10.69 -0.05 -3.00 16 13 H 0.13 2.84 8.14 -2.38 -0.02 2.82 16 14 C 0.11 2.79 6.61 81.09 0.54 3.33 16 15 N -0.63 -25.06 3.34 -871.37 -2.91 -27.97 16 16 C 0.60 27.39 8.00 86.62 0.69 28.08 16 17 O -0.59 -34.01 14.13 -4.12 -0.06 -34.07 16 18 C -0.25 -8.92 6.29 -19.04 -0.12 -9.04 16 19 C -0.19 -4.56 10.14 23.62 0.24 -4.32 16 20 C 0.01 0.11 11.89 83.12 0.99 1.10 16 21 N -0.54 -10.31 5.80 -182.73 -1.06 -11.37 16 22 H 0.43 4.90 7.84 -92.71 -0.73 4.17 16 23 C 0.12 3.72 6.69 41.78 0.28 4.00 16 24 C -0.12 -3.96 5.61 -11.54 -0.06 -4.03 16 25 C -0.14 -3.01 10.13 30.62 0.31 -2.70 16 26 C -0.17 -4.79 10.24 30.62 0.31 -4.48 16 27 C 0.11 4.34 3.98 38.51 0.15 4.49 16 28 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 29 C 0.18 9.95 4.59 85.83 0.39 10.34 16 30 H 0.24 15.88 8.31 -92.71 -0.77 15.10 16 31 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 2.12 7.87 -2.38 -0.02 2.11 16 33 H 0.10 2.39 8.14 -2.38 -0.02 2.37 16 34 H 0.04 1.44 7.68 -2.39 -0.02 1.42 16 35 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.10 2.05 6.00 -2.39 -0.01 2.03 16 37 H 0.16 3.18 5.49 -2.91 -0.02 3.17 16 38 H 0.22 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.10 4.09 6.64 -2.39 -0.02 4.07 16 40 H 0.12 1.64 7.08 -2.39 -0.02 1.63 16 41 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 42 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 44 H -0.01 -0.43 8.00 -2.39 -0.02 -0.45 16 45 H 0.05 3.40 4.95 -2.39 -0.01 3.39 16 Total: -1.00 -92.19 354.39 2.01 -90.18 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.29 Total: 16.89 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: 5.63 Total: 9.72 kcal Atomic # 7 Polarization: -130.75 SS G_CDS: -5.88 Total: -136.62 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.06 Total: -34.07 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 2.03 Total: 53.90 kcal Total: -92.19 2.01 -90.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084614064.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.244 kcal (2) G-P(sol) polarization free energy of solvation -92.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds