Wall clock time and date at job start Tue Mar 31 2020 11:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48494 * 109.47167 * 240.00341 * 3 2 1 5 5 H 1.48494 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46619 * 120.00420 * 3 2 1 7 7 C 1.38810 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00100 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99844 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85045 * 23.80889 * 10 9 7 12 12 C 1.53778 * 113.61223 * 155.00055 * 10 9 7 13 13 C 1.53785 * 87.07976 * 89.11698 * 12 10 9 14 14 H 1.09005 * 113.61502 * 270.79915 * 13 12 10 15 15 C 1.53004 * 113.61568 * 139.98012 * 13 12 10 16 16 N 1.46499 * 109.47198 * 175.00089 * 15 13 12 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 13 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 H 1.08993 * 110.26505 * 57.94055 * 19 17 16 21 21 C 1.54341 * 110.29473 * 179.97438 * 19 17 16 22 22 C 1.54362 * 102.39381 * 92.59675 * 21 19 17 23 23 C 1.51224 * 105.11543 * 26.29712 * 22 21 19 24 24 C 1.38749 * 130.69014 * 162.87740 * 23 22 21 25 25 C 1.38574 * 118.55828 * 179.97438 * 24 23 22 26 26 C 1.38229 * 118.98662 * 359.97438 * 25 24 23 27 27 N 1.31694 * 120.80332 * 359.97438 * 26 25 24 28 28 C 1.32291 * 122.03180 * 0.04115 * 27 26 25 29 29 C 1.53776 * 113.61612 * 252.49970 * 10 9 7 30 30 H 0.96995 * 120.00070 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00250 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.61793 * 334.56970 * 12 10 9 33 33 H 1.08999 * 113.69099 * 203.67641 * 12 10 9 34 34 H 1.09009 * 109.46730 * 54.99876 * 15 13 12 35 35 H 1.08998 * 109.46846 * 295.00421 * 15 13 12 36 36 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 37 37 H 1.08995 * 110.82458 * 210.83140 * 21 19 17 38 38 H 1.09003 * 110.81793 * 334.37274 * 21 19 17 39 39 H 1.09000 * 110.31182 * 145.20486 * 22 21 19 40 40 H 1.08995 * 110.31697 * 267.38468 * 22 21 19 41 41 H 1.08000 * 120.71660 * 359.95065 * 24 23 22 42 42 H 1.07996 * 120.50475 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.60032 * 179.97438 * 26 25 24 44 44 H 1.08997 * 113.61844 * 156.33745 * 29 10 9 45 45 H 1.09007 * 113.61444 * 25.43063 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 0.4049 12 6 1.2603 -4.8288 0.5949 13 6 0.7207 -5.0791 -0.8232 14 1 -0.1909 -4.5251 -1.0476 15 6 0.6199 -6.5616 -1.1878 16 7 -0.0119 -6.6994 -2.5024 17 6 -0.2111 -7.9238 -3.0292 18 8 0.1372 -8.9113 -2.4173 19 6 -0.8666 -8.0657 -4.3788 20 1 -0.2973 -7.5238 -5.1338 21 6 -0.9826 -9.5559 -4.7635 22 6 -2.3879 -9.9244 -4.2420 23 6 -3.1636 -8.6262 -4.2478 24 6 -4.5292 -8.3881 -4.1884 25 6 -4.9744 -7.0760 -4.2104 26 6 -4.0462 -6.0549 -4.2899 27 7 -2.7569 -6.3181 -4.3436 28 6 -2.2923 -7.5566 -4.3253 29 6 1.9994 -4.4021 -1.3443 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 0.4939 -4.5190 1.3054 33 1 1.8860 -5.6372 0.9731 34 1 0.0194 -7.0797 -0.4399 35 1 1.6186 -6.9972 -1.2172 36 1 -0.2908 -5.9095 -2.9916 37 1 -0.9248 -9.6826 -5.8446 38 1 -0.2159 -10.1463 -4.2617 39 1 -2.8593 -10.6498 -4.9051 40 1 -2.3235 -10.3222 -3.2293 41 1 -5.2299 -9.2076 -4.1267 42 1 -6.0305 -6.8547 -4.1653 43 1 -4.3823 -5.0287 -4.3081 44 1 2.8282 -5.0933 -1.4969 45 1 1.8295 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086459900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:19 Heat of formation + Delta-G solvation = 25.248766 kcal Electronic energy + Delta-G solvation = -25583.290086 eV Core-core repulsion = 21987.069464 eV Total energy + Delta-G solvation = -3596.220622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.30937 -39.53389 -38.49245 -36.18942 -34.60497 -33.25106 -32.87973 -30.25389 -29.63411 -28.86210 -26.90738 -25.02804 -23.85133 -23.70704 -22.66997 -21.87003 -21.37313 -20.07192 -18.42750 -17.65011 -17.18601 -17.01935 -16.35658 -15.95786 -15.59015 -14.99712 -14.94012 -14.73851 -14.13651 -13.95844 -13.74630 -13.64170 -13.40689 -13.28954 -12.94621 -12.85975 -12.29366 -12.17743 -12.05115 -11.89177 -11.58155 -11.41507 -11.32015 -11.02156 -10.81839 -10.47189 -10.31066 -10.18680 -9.98207 -9.80509 -9.67155 -9.55719 -9.45540 -8.96747 -8.91010 -8.85689 -6.98607 -5.79083 -3.08148 0.78838 1.01003 2.52698 3.16482 3.43453 3.47765 3.48773 3.53644 3.72353 4.06922 4.46987 4.54639 4.56989 4.66496 4.67352 4.87279 4.96417 5.07119 5.09449 5.13745 5.27787 5.28510 5.34537 5.46947 5.47857 5.54798 5.66566 5.72757 5.73339 5.80042 5.88691 5.89888 5.96720 5.98567 6.13808 6.23468 6.39616 6.41209 6.47255 6.62183 6.77907 6.92965 7.07375 7.55467 7.69693 7.72954 8.20464 8.40041 9.50542 10.08395 10.42708 11.43304 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.002808 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.625620 B = 9969.964675 C =11130.102739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.062 0.938 12 C -0.148 4.148 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.131 3.869 16 N -0.715 5.715 17 C 0.525 3.475 18 O -0.543 6.543 19 C -0.062 4.062 20 H 0.116 0.884 21 C -0.104 4.104 22 C -0.079 4.079 23 C -0.140 4.140 24 C -0.067 4.067 25 C -0.168 4.168 26 C 0.105 3.895 27 N -0.470 5.470 28 C 0.120 3.880 29 C -0.168 4.168 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.408 0.592 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.162 0.838 44 H 0.067 0.933 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.997 -20.326 -10.770 24.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.056 3.944 11 H 0.080 0.920 12 C -0.188 4.188 13 C -0.138 4.138 14 H 0.111 0.889 15 C 0.008 3.992 16 N -0.366 5.366 17 C 0.309 3.691 18 O -0.421 6.421 19 C -0.084 4.084 20 H 0.133 0.867 21 C -0.142 4.142 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.093 4.093 25 C -0.188 4.188 26 C -0.052 4.052 27 N -0.178 5.178 28 C -0.018 4.018 29 C -0.209 4.209 30 H 0.066 0.934 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.244 0.756 37 H 0.100 0.900 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.107 0.893 41 H 0.151 0.849 42 H 0.156 0.844 43 H 0.179 0.821 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.038 -20.123 -10.341 23.694 hybrid contribution -0.870 0.787 -0.252 1.200 sum -7.908 -19.336 -10.592 23.423 Atomic orbital electron populations 1.69650 1.05130 1.25873 1.57402 1.24760 0.95534 0.97763 1.02791 0.86245 0.78519 0.83407 0.77887 1.21209 1.21689 1.21217 1.19246 0.91082 0.83990 1.43060 0.91056 1.42166 1.05689 0.99427 1.87144 1.21045 0.95050 0.85580 0.92759 0.91976 1.23448 1.00490 0.99706 0.95139 1.22704 0.99624 0.92927 0.98525 0.88922 1.21494 0.97486 0.97108 0.83132 1.46071 1.61139 1.08312 1.21043 1.20064 0.78660 0.83500 0.86859 1.90669 1.51891 1.37577 1.61931 1.20784 0.91887 0.98812 0.96920 0.86655 1.22268 0.97867 0.92569 1.01496 1.20994 0.94029 0.93831 1.02778 1.21504 0.94233 0.97919 1.00563 1.21079 0.94239 0.97301 0.96714 1.22134 1.01518 0.93370 1.01792 1.22714 0.87296 1.00046 0.95148 1.66822 1.17112 1.22286 1.11613 1.21324 0.95011 0.88704 0.96712 1.23886 0.95608 0.99626 1.01780 0.93402 0.78104 0.91400 0.90488 0.92044 0.91484 0.75648 0.89980 0.88008 0.90125 0.89336 0.84918 0.84366 0.82115 0.91413 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.71 -17.64 5.31 -52.64 -0.28 -17.92 16 10 C 0.17 3.34 4.56 -67.12 -0.31 3.03 16 11 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 12 C -0.15 -2.45 7.39 -25.92 -0.19 -2.64 16 13 C -0.12 -1.88 3.63 -89.80 -0.33 -2.20 16 14 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 15 C 0.13 1.87 5.51 -4.04 -0.02 1.85 16 16 N -0.72 -9.76 5.52 -60.29 -0.33 -10.10 16 17 C 0.52 7.13 7.14 -10.99 -0.08 7.05 16 18 O -0.54 -8.73 15.46 5.55 0.09 -8.64 16 19 C -0.06 -0.67 3.27 -91.84 -0.30 -0.97 16 20 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 21 C -0.10 -0.90 6.38 -25.32 -0.16 -1.06 16 22 C -0.08 -0.67 6.76 -26.91 -0.18 -0.85 16 23 C -0.14 -1.42 6.16 -104.20 -0.64 -2.06 16 24 C -0.07 -0.58 10.17 -39.27 -0.40 -0.98 16 25 C -0.17 -1.42 10.12 -39.46 -0.40 -1.82 16 26 C 0.11 1.08 11.18 -17.61 -0.20 0.89 16 27 N -0.47 -5.85 10.35 -9.18 -0.10 -5.95 16 28 C 0.12 1.40 6.58 -82.04 -0.54 0.86 16 29 C -0.17 -2.88 7.43 -25.92 -0.19 -3.08 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.38 10.19 7.90 -40.82 -0.32 9.87 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 35 H 0.07 0.96 7.84 -51.93 -0.41 0.55 16 36 H 0.41 5.46 8.47 -40.82 -0.35 5.11 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.10 0.96 6.97 -51.93 -0.36 0.60 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 43 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 44 H 0.07 1.04 7.90 -51.93 -0.41 0.63 16 45 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 LS Contribution 373.05 15.07 5.62 5.62 Total: -1.00 -32.66 373.05 -10.37 -43.03 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.89 Total: 13.27 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -4.18 Total: -9.31 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.02 Total: -61.26 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.09 Total: -8.64 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.66 -10.37 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086459900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.277 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds