Wall clock time and date at job start Tue Mar 31 2020 11:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99804 * 2 1 4 4 H 1.48494 * 109.47167 * 240.00341 * 3 2 1 5 5 H 1.48494 * 109.46989 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46619 * 120.00420 * 3 2 1 7 7 C 1.38810 * 120.00191 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00100 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00026 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99844 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.85045 * 23.80889 * 10 9 7 12 12 C 1.53778 * 113.61223 * 155.00055 * 10 9 7 13 13 C 1.53785 * 87.07976 * 89.11698 * 12 10 9 14 14 H 1.09005 * 113.61502 * 270.79915 * 13 12 10 15 15 C 1.53004 * 113.61568 * 139.98012 * 13 12 10 16 16 N 1.46499 * 109.47198 * 175.00089 * 15 13 12 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 13 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 H 1.08993 * 110.26505 * 57.94055 * 19 17 16 21 21 C 1.54341 * 110.29473 * 179.97438 * 19 17 16 22 22 C 1.54362 * 102.39381 * 92.59675 * 21 19 17 23 23 C 1.51224 * 105.11543 * 26.29712 * 22 21 19 24 24 C 1.38749 * 130.69014 * 162.87740 * 23 22 21 25 25 C 1.38574 * 118.55828 * 179.97438 * 24 23 22 26 26 C 1.38229 * 118.98662 * 359.97438 * 25 24 23 27 27 N 1.31694 * 120.80332 * 359.97438 * 26 25 24 28 28 C 1.32291 * 122.03180 * 0.04115 * 27 26 25 29 29 C 1.53776 * 113.61612 * 252.49970 * 10 9 7 30 30 H 0.96995 * 120.00070 * 359.97438 * 1 2 3 31 31 H 0.96992 * 120.00250 * 0.02562 * 9 7 2 32 32 H 1.08997 * 113.61793 * 334.56970 * 12 10 9 33 33 H 1.08999 * 113.69099 * 203.67641 * 12 10 9 34 34 H 1.09009 * 109.46730 * 54.99876 * 15 13 12 35 35 H 1.08998 * 109.46846 * 295.00421 * 15 13 12 36 36 H 0.97001 * 119.99790 * 359.97438 * 16 15 13 37 37 H 1.08995 * 110.82458 * 210.83140 * 21 19 17 38 38 H 1.09003 * 110.81793 * 334.37274 * 21 19 17 39 39 H 1.09000 * 110.31182 * 145.20486 * 22 21 19 40 40 H 1.08995 * 110.31697 * 267.38468 * 22 21 19 41 41 H 1.08000 * 120.71660 * 359.95065 * 24 23 22 42 42 H 1.07996 * 120.50475 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.60032 * 179.97438 * 26 25 24 44 44 H 1.08997 * 113.61844 * 156.33745 * 29 10 9 45 45 H 1.09007 * 113.61444 * 25.43063 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 3.0657 -3.5638 0.4049 12 6 1.2603 -4.8288 0.5949 13 6 0.7207 -5.0791 -0.8232 14 1 -0.1909 -4.5251 -1.0476 15 6 0.6199 -6.5616 -1.1878 16 7 -0.0119 -6.6994 -2.5024 17 6 -0.2111 -7.9238 -3.0292 18 8 0.1372 -8.9113 -2.4173 19 6 -0.8666 -8.0657 -4.3788 20 1 -0.2973 -7.5238 -5.1338 21 6 -0.9826 -9.5559 -4.7635 22 6 -2.3879 -9.9244 -4.2420 23 6 -3.1636 -8.6262 -4.2478 24 6 -4.5292 -8.3881 -4.1884 25 6 -4.9744 -7.0760 -4.2104 26 6 -4.0462 -6.0549 -4.2899 27 7 -2.7569 -6.3181 -4.3436 28 6 -2.2923 -7.5566 -4.3253 29 6 1.9994 -4.4021 -1.3443 30 1 -0.4850 0.8400 0.0004 31 1 0.3557 -2.3881 -0.0005 32 1 0.4939 -4.5190 1.3054 33 1 1.8860 -5.6372 0.9731 34 1 0.0194 -7.0797 -0.4399 35 1 1.6186 -6.9972 -1.2172 36 1 -0.2908 -5.9095 -2.9916 37 1 -0.9248 -9.6826 -5.8446 38 1 -0.2159 -10.1463 -4.2617 39 1 -2.8593 -10.6498 -4.9051 40 1 -2.3235 -10.3222 -3.2293 41 1 -5.2299 -9.2076 -4.1267 42 1 -6.0305 -6.8547 -4.1653 43 1 -4.3823 -5.0287 -4.3081 44 1 2.8282 -5.0933 -1.4969 45 1 1.8295 -3.7478 -2.1995 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086459900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:18 Heat of formation + Delta-G solvation = 4.322598 kcal Electronic energy + Delta-G solvation = -25584.197512 eV Core-core repulsion = 21987.069464 eV Total energy + Delta-G solvation = -3597.128049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.11303 -40.64259 -39.83738 -36.99355 -35.97882 -34.98416 -33.67746 -32.10582 -30.40518 -29.82842 -28.12687 -26.46066 -25.70586 -24.49387 -23.74061 -22.93917 -22.32098 -21.07103 -19.84990 -19.34005 -18.53286 -17.81092 -17.12175 -17.08584 -16.72818 -16.46055 -16.02281 -15.84410 -15.61817 -15.36152 -14.80276 -14.67722 -14.47823 -14.40933 -14.23392 -13.84798 -13.64834 -13.30913 -13.00134 -12.93014 -12.91935 -12.71617 -12.62727 -12.25492 -12.20778 -12.09201 -12.06481 -11.60061 -11.50550 -11.19159 -10.94517 -10.80865 -10.67224 -10.31490 -10.09078 -9.69893 -9.01260 -7.95457 -5.24323 0.05529 0.30330 1.47311 1.49247 1.50287 1.56308 2.15335 2.55539 2.77544 2.96200 3.35513 3.36713 3.64918 3.71351 3.75815 3.80162 3.87580 3.96914 4.06474 4.12035 4.17368 4.29368 4.30046 4.37865 4.44952 4.61375 4.62151 4.69848 4.71844 4.81498 4.90143 4.94464 4.95997 5.06581 5.09679 5.14582 5.21900 5.25460 5.29932 5.33135 5.47065 5.53086 5.64157 5.73659 6.27676 6.45935 6.97602 7.12775 7.32442 8.09273 8.31796 9.27723 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.002808 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.625620 B = 9969.964675 C =11130.102739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.974 3.026 4 H -0.278 1.278 5 H -0.296 1.296 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.077 0.923 9 N -0.721 5.721 10 C 0.146 3.854 11 H 0.063 0.937 12 C -0.133 4.133 13 C -0.104 4.104 14 H 0.073 0.927 15 C 0.140 3.860 16 N -0.717 5.717 17 C 0.523 3.477 18 O -0.570 6.570 19 C -0.061 4.061 20 H 0.125 0.875 21 C -0.099 4.099 22 C -0.076 4.076 23 C -0.148 4.148 24 C -0.071 4.071 25 C -0.161 4.161 26 C 0.083 3.917 27 N -0.502 5.502 28 C 0.095 3.905 29 C -0.153 4.153 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.409 0.591 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.077 0.923 41 H 0.162 0.838 42 H 0.169 0.831 43 H 0.172 0.828 44 H 0.094 0.906 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.030 -21.906 -11.503 26.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.267 4.267 3 Si 0.803 3.197 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.036 3.964 11 H 0.081 0.919 12 C -0.173 4.173 13 C -0.122 4.122 14 H 0.091 0.909 15 C 0.017 3.983 16 N -0.367 5.367 17 C 0.310 3.690 18 O -0.449 6.449 19 C -0.082 4.082 20 H 0.143 0.857 21 C -0.137 4.137 22 C -0.113 4.113 23 C -0.150 4.150 24 C -0.097 4.097 25 C -0.180 4.180 26 C -0.074 4.074 27 N -0.210 5.210 28 C -0.042 4.042 29 C -0.193 4.193 30 H 0.060 0.940 31 H 0.205 0.795 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.244 0.756 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.125 0.875 40 H 0.095 0.905 41 H 0.180 0.820 42 H 0.186 0.814 43 H 0.190 0.810 44 H 0.113 0.887 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.032 -21.742 -11.083 25.397 hybrid contribution -0.871 1.223 -0.015 1.502 sum -7.903 -20.519 -11.098 24.631 Atomic orbital electron populations 1.69811 1.06619 1.26165 1.59389 1.25574 0.96391 1.01125 1.03656 0.85205 0.77193 0.79118 0.78211 1.20395 1.22211 1.20333 1.19649 0.91548 0.85169 1.41291 0.90488 1.42313 1.05292 1.00636 1.87633 1.21371 0.95124 0.84857 0.95092 0.91901 1.23352 0.99952 0.98806 0.95150 1.22470 0.98173 0.93708 0.97888 0.90914 1.21326 0.97890 0.95530 0.83552 1.46099 1.61085 1.08661 1.20812 1.20562 0.78011 0.82787 0.87687 1.90649 1.53073 1.38242 1.62975 1.20848 0.91690 1.00501 0.95205 0.85731 1.22306 0.97772 0.90747 1.02902 1.21010 0.93849 0.93680 1.02748 1.21801 0.94943 0.98095 1.00196 1.21495 0.94220 0.98309 0.95662 1.22476 1.02706 0.92884 0.99984 1.23085 0.87218 1.01386 0.95714 1.66765 1.18408 1.23144 1.12708 1.21465 0.95515 0.89045 0.98188 1.23719 0.97173 0.99244 0.99174 0.94004 0.79487 0.92541 0.87352 0.92300 0.90778 0.75572 0.87527 0.88924 0.87456 0.90468 0.81998 0.81375 0.81049 0.88722 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.61 13.06 21.65 0.28 -59.32 16 2 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 3 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.24 -13.69 9.97 84.03 0.84 -12.85 16 8 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 9 N -0.72 -36.64 5.31 -320.45 -1.70 -38.34 16 10 C 0.15 5.72 4.56 45.51 0.21 5.93 16 11 H 0.06 2.44 8.10 -2.39 -0.02 2.42 16 12 C -0.13 -4.26 7.39 31.12 0.23 -4.03 16 13 C -0.10 -3.22 3.63 -10.26 -0.04 -3.25 16 14 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 15 C 0.14 3.87 5.51 86.38 0.48 4.35 16 16 N -0.72 -19.38 5.52 -463.05 -2.55 -21.93 16 17 C 0.52 14.02 7.14 87.66 0.63 14.65 16 18 O -0.57 -18.05 15.46 -3.04 -0.05 -18.09 16 19 C -0.06 -1.26 3.27 -11.58 -0.04 -1.30 16 20 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 21 C -0.10 -1.57 6.38 31.51 0.20 -1.37 16 22 C -0.08 -1.14 6.76 30.48 0.21 -0.94 16 23 C -0.15 -2.79 6.16 -19.59 -0.12 -2.91 16 24 C -0.07 -1.07 10.17 22.47 0.23 -0.84 16 25 C -0.16 -2.41 10.12 22.35 0.23 -2.19 16 26 C 0.08 1.67 11.18 84.71 0.95 2.61 16 27 N -0.50 -12.51 10.35 -182.97 -1.89 -14.40 16 28 C 0.10 2.17 6.58 42.72 0.28 2.45 16 29 C -0.15 -5.12 7.43 31.12 0.23 -4.88 16 30 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.37 20.41 7.90 -92.71 -0.73 19.68 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.11 2.82 8.10 -2.39 -0.02 2.80 16 34 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 35 H 0.07 1.98 7.84 -2.39 -0.02 1.96 16 36 H 0.41 11.07 8.47 -92.71 -0.79 10.28 16 37 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.66 6.97 -2.39 -0.02 1.64 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 42 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.17 2.79 8.06 -2.91 -0.02 2.76 16 44 H 0.09 2.69 7.90 -2.39 -0.02 2.67 16 45 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -71.37 373.05 0.57 -70.80 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: -0.51 Total: 41.44 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: 4.97 Total: -8.45 kcal Atomic # 7 Polarization: -128.13 SS G_CDS: -5.87 Total: -134.00 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.09 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -71.37 0.57 -70.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086459900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.120 kcal (2) G-P(sol) polarization free energy of solvation -71.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds