Wall clock time and date at job start Tue Mar 31 2020 11:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48499 * 109.46935 * 269.99879 * 3 2 1 5 5 H 1.48495 * 109.47176 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.46884 * 150.00242 * 3 2 1 7 7 C 1.38809 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00135 * 189.15533 * 7 2 1 9 9 N 1.36938 * 120.00198 * 9.15133 * 7 2 1 10 10 C 1.49649 * 127.84936 * 196.38393 * 9 7 2 11 11 C 1.54386 * 104.52882 * 219.48239 * 10 9 7 12 12 H 1.08994 * 110.81134 * 215.21954 * 11 10 9 13 13 C 1.55408 * 104.78440 * 336.32244 * 11 10 9 14 14 H 1.09000 * 110.66848 * 239.25543 * 13 11 10 15 15 C 1.48156 * 127.83978 * 16.14903 * 9 7 2 16 16 C 1.53277 * 109.51091 * 116.64786 * 13 11 10 17 17 H 1.09004 * 110.93658 * 181.84006 * 16 13 11 18 18 C 1.53318 * 108.74839 * 60.12604 * 16 13 11 19 19 C 1.52929 * 109.59625 * 299.32958 * 18 16 13 20 20 C 1.52978 * 109.07538 * 93.04312 * 11 10 9 21 21 H 1.09001 * 109.63668 * 66.06409 * 20 11 10 22 22 C 1.53604 * 109.81439 * 305.55392 * 20 11 10 23 23 N 1.47638 * 106.73622 * 300.25536 * 22 20 11 24 24 C 1.34783 * 122.06532 * 179.97438 * 23 22 20 25 25 O 1.21689 * 119.99967 * 184.72037 * 24 23 22 26 26 C 1.46680 * 119.99842 * 4.71928 * 24 23 22 27 27 C 1.37867 * 126.23308 * 174.13084 * 26 24 23 28 28 C 1.39831 * 107.08794 * 180.02562 * 27 26 24 29 29 C 1.35459 * 107.86256 * 359.97438 * 28 27 26 30 30 N 1.35532 * 108.86862 * 0.02562 * 29 28 27 31 31 H 0.97006 * 125.67292 * 180.02562 * 30 29 28 32 32 H 0.96999 * 119.99956 * 0.02562 * 1 2 3 33 33 H 1.09004 * 111.08169 * 100.40851 * 10 9 7 34 34 H 1.08998 * 109.81095 * 337.92775 * 10 9 7 35 35 H 1.09001 * 110.40640 * 21.68506 * 15 9 7 36 36 H 1.08997 * 110.51103 * 259.29667 * 15 9 7 37 37 H 1.09008 * 109.45120 * 59.36598 * 18 16 13 38 38 H 1.09003 * 109.45694 * 179.28869 * 18 16 13 39 39 H 1.09005 * 109.38418 * 120.87134 * 19 18 16 40 40 H 1.09006 * 109.38521 * 240.54334 * 19 18 16 41 41 H 1.09000 * 110.13574 * 180.87800 * 22 20 11 42 42 H 1.08996 * 109.86121 * 59.48653 * 22 20 11 43 43 H 1.08005 * 126.45436 * 0.04000 * 27 26 24 44 44 H 1.08000 * 126.07098 * 179.97438 * 28 27 26 45 45 H 1.07995 * 125.56058 * 180.26580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0799 -1.2082 0.1483 9 7 1.3386 -2.3804 -0.1897 10 6 1.8180 -3.7676 0.1025 11 6 1.2947 -4.6147 -1.0774 12 1 1.0170 -5.6143 -0.7433 13 6 0.0757 -3.8216 -1.6252 14 1 -0.8298 -4.4264 -1.5775 15 6 -0.0294 -2.5709 -0.7256 16 6 0.3604 -3.3742 -3.0633 17 1 -0.4680 -2.7870 -3.4598 18 6 0.5991 -4.6175 -3.9281 19 6 1.8055 -5.3904 -3.3931 20 6 2.3738 -4.6852 -2.1595 21 1 3.2335 -5.2401 -1.7839 22 6 2.8084 -3.2659 -2.5547 23 7 1.6033 -2.5769 -3.0575 24 6 1.6370 -1.3010 -3.4906 25 8 0.6065 -0.7417 -3.8165 26 6 2.9157 -0.5866 -3.5691 27 6 3.1151 0.6718 -4.0958 28 6 4.4775 0.9596 -3.9678 29 6 5.0732 -0.1042 -3.3777 30 7 4.1351 -1.0506 -3.1306 31 1 4.2961 -1.9115 -2.7134 32 1 -0.4850 0.8400 -0.0004 33 1 1.4087 -4.1337 1.0441 34 1 2.9075 -3.7842 0.1286 35 1 -0.3314 -1.7041 -1.3134 36 1 -0.7366 -2.7443 0.0855 37 1 -0.2838 -5.2561 -3.8972 38 1 0.7904 -4.3129 -4.9570 39 1 1.4971 -6.4003 -3.1226 40 1 2.5729 -5.4430 -4.1655 41 1 3.5663 -3.3097 -3.3368 42 1 3.2006 -2.7425 -1.6828 43 1 2.3610 1.3144 -4.5259 44 1 4.9677 1.8687 -4.2834 45 1 6.1235 -0.1835 -3.1393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089772723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:43 Heat of formation + Delta-G solvation = 63.795590 kcal Electronic energy + Delta-G solvation = -29534.301628 eV Core-core repulsion = 25939.752522 eV Total energy + Delta-G solvation = -3594.549106 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.24249 -40.20477 -37.52533 -35.28487 -33.00810 -32.04957 -31.86909 -30.37081 -29.00928 -28.60817 -26.63482 -25.31724 -24.62390 -22.67445 -21.53425 -20.36845 -20.29132 -20.20364 -19.54002 -17.85772 -16.80649 -16.36737 -15.99309 -15.82176 -15.26096 -14.45240 -14.18658 -14.14906 -13.84931 -13.49602 -13.23132 -12.99844 -12.79255 -12.64943 -12.20352 -12.19742 -11.94174 -11.83171 -11.77259 -11.57680 -11.38827 -11.27246 -11.08481 -10.77891 -10.68474 -10.32116 -9.99806 -9.86529 -9.69194 -9.61409 -9.48263 -9.20732 -8.55342 -8.47452 -7.93743 -7.62058 -6.73509 -5.69638 -3.04006 2.13472 3.22892 3.47056 3.47241 3.51507 3.60366 3.71197 4.18107 4.56092 4.78148 4.86894 4.95410 5.20010 5.36198 5.37078 5.42440 5.46864 5.49969 5.55555 5.65448 5.71127 5.74798 5.80306 5.85478 5.93200 6.00162 6.07644 6.15608 6.19164 6.22747 6.36308 6.39711 6.50749 6.55574 6.58983 6.67288 6.76798 6.83916 7.08206 7.24625 7.38186 7.44366 7.59003 7.83753 7.85631 8.14755 8.31683 8.94633 9.18404 9.83720 10.60827 11.43429 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.008687 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.605574 B = 3222.446992 C = 4242.850833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.014 3.986 3 Si 0.890 3.110 4 H -0.272 1.272 5 H -0.294 1.294 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.065 0.935 9 N -0.586 5.586 10 C 0.123 3.877 11 C -0.093 4.093 12 H 0.071 0.929 13 C -0.122 4.122 14 H 0.072 0.928 15 C 0.165 3.835 16 C 0.160 3.840 17 H 0.098 0.902 18 C -0.129 4.129 19 C -0.110 4.110 20 C -0.085 4.085 21 H 0.077 0.923 22 C 0.111 3.889 23 N -0.581 5.581 24 C 0.609 3.391 25 O -0.536 6.536 26 C -0.016 4.016 27 C -0.125 4.125 28 C -0.213 4.213 29 C 0.000 4.000 30 N -0.537 5.537 31 H 0.416 0.584 32 H 0.253 0.747 33 H 0.022 0.978 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.014 0.986 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.090 0.910 43 H 0.139 0.861 44 H 0.134 0.866 45 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.527 -10.278 -7.389 14.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.185 4.185 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.220 1.220 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.083 0.917 9 N -0.311 5.311 10 C -0.003 4.003 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.142 4.142 14 H 0.090 0.910 15 C 0.039 3.961 16 C 0.056 3.944 17 H 0.116 0.884 18 C -0.167 4.167 19 C -0.147 4.147 20 C -0.104 4.104 21 H 0.095 0.905 22 C -0.013 4.013 23 N -0.313 5.313 24 C 0.399 3.601 25 O -0.413 6.413 26 C -0.130 4.130 27 C -0.151 4.151 28 C -0.238 4.238 29 C -0.136 4.136 30 N -0.138 5.138 31 H 0.260 0.740 32 H 0.063 0.937 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.111 0.889 36 H 0.032 0.968 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.156 0.844 44 H 0.152 0.848 45 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 6.931 -9.850 -7.464 14.170 hybrid contribution 0.675 0.541 0.556 1.028 sum 7.606 -9.310 -6.908 13.865 Atomic orbital electron populations 1.69854 1.05026 1.25282 1.54336 1.24735 0.95318 0.97484 1.00969 0.86456 0.78478 0.84390 0.78672 1.19826 1.22015 1.21115 1.18580 0.89885 0.82273 1.45153 0.91736 1.45170 1.14119 0.99322 1.72464 1.21980 0.96743 0.87616 0.94003 1.22327 0.94979 0.98263 0.95732 0.91084 1.22979 0.96612 0.99319 0.95333 0.90984 1.21496 0.86947 0.94005 0.93614 1.21230 0.87450 0.90557 0.95119 0.88373 1.21955 0.98438 0.97082 0.99234 1.21494 0.97621 0.98709 0.96925 1.21354 0.98582 0.94526 0.95890 0.90478 1.22070 0.87627 0.93580 0.97999 1.47787 1.09297 1.11468 1.62734 1.16679 0.86757 0.80080 0.76580 1.90772 1.33216 1.66074 1.51255 1.20419 0.85377 0.97491 1.09695 1.21152 0.96277 0.94252 1.03438 1.20740 0.94351 0.99685 1.08986 1.21861 0.94811 0.91033 1.05916 1.42841 1.07064 1.17106 1.46769 0.73988 0.93674 0.96053 0.94004 0.88936 0.96840 0.91162 0.92163 0.91940 0.92518 0.93452 0.89184 0.84358 0.84784 0.82015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.97 10.90 55.49 0.60 -26.37 16 2 C 0.01 0.40 5.40 -17.43 -0.09 0.31 16 3 Si 0.89 22.95 29.56 -169.99 -5.03 17.93 16 4 H -0.27 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.73 7.11 56.52 0.40 -7.32 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.08 9.32 -15.06 -0.14 -6.22 16 8 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -13.81 2.04 -167.58 -0.34 -14.15 16 10 C 0.12 2.33 6.08 -1.56 -0.01 2.32 16 11 C -0.09 -1.44 3.26 -88.63 -0.29 -1.73 16 12 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 13 C -0.12 -2.17 3.20 -88.46 -0.28 -2.46 16 14 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.17 3.89 5.00 -2.39 -0.01 3.88 16 16 C 0.16 2.80 2.80 -66.98 -0.19 2.61 16 17 H 0.10 1.94 7.20 -51.93 -0.37 1.57 16 18 C -0.13 -1.72 5.85 -26.60 -0.16 -1.87 16 19 C -0.11 -1.29 5.64 -26.75 -0.15 -1.44 16 20 C -0.08 -1.13 2.66 -90.30 -0.24 -1.37 16 21 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 22 C 0.11 1.72 3.34 -3.10 -0.01 1.71 16 23 N -0.58 -10.85 1.95 -165.12 -0.32 -11.17 16 24 C 0.61 13.45 7.71 -12.85 -0.10 13.35 16 25 O -0.54 -13.72 16.49 5.20 0.09 -13.64 16 26 C -0.02 -0.32 6.84 -81.98 -0.56 -0.88 16 27 C -0.12 -2.48 10.66 -39.12 -0.42 -2.90 16 28 C -0.21 -3.53 10.81 -39.98 -0.43 -3.96 16 29 C 0.00 -0.01 11.89 -16.91 -0.20 -0.21 16 30 N -0.54 -8.89 5.40 -9.39 -0.05 -8.94 16 31 H 0.42 6.07 4.64 -40.82 -0.19 5.88 16 32 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.74 7.28 -51.93 -0.38 0.36 16 35 H 0.09 2.57 6.24 -51.93 -0.32 2.25 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.05 0.64 6.87 -51.93 -0.36 0.28 16 42 H 0.09 1.59 4.26 -51.93 -0.22 1.37 16 43 H 0.14 2.75 8.06 -52.48 -0.42 2.33 16 44 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.16 1.74 8.06 -52.49 -0.42 1.31 16 LS Contribution 338.22 15.07 5.10 5.10 Total: -1.00 -33.06 338.22 -9.70 -42.75 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.46 Total: 7.34 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -3.28 Total: 1.14 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.11 Total: -60.63 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: 0.09 Total: -13.64 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.06 -9.70 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089772723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.549 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds