Wall clock time and date at job start Tue Mar 31 2020 11:12:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31618 * 1
3 3 Si 1.86800 * 119.99869 * 2 1
4 4 H 1.48499 * 109.46935 * 269.99879 * 3 2 1
5 5 H 1.48495 * 109.47176 * 30.00367 * 3 2 1
6 6 H 1.48501 * 109.46884 * 150.00242 * 3 2 1
7 7 C 1.38809 * 119.99965 * 180.02562 * 2 1 3
8 8 H 1.07999 * 120.00135 * 189.15533 * 7 2 1
9 9 N 1.36938 * 120.00198 * 9.15133 * 7 2 1
10 10 C 1.49649 * 127.84936 * 196.38393 * 9 7 2
11 11 C 1.54386 * 104.52882 * 219.48239 * 10 9 7
12 12 H 1.08994 * 110.81134 * 215.21954 * 11 10 9
13 13 C 1.55408 * 104.78440 * 336.32244 * 11 10 9
14 14 H 1.09000 * 110.66848 * 239.25543 * 13 11 10
15 15 C 1.48156 * 127.83978 * 16.14903 * 9 7 2
16 16 C 1.53277 * 109.51091 * 116.64786 * 13 11 10
17 17 H 1.09004 * 110.93658 * 181.84006 * 16 13 11
18 18 C 1.53318 * 108.74839 * 60.12604 * 16 13 11
19 19 C 1.52929 * 109.59625 * 299.32958 * 18 16 13
20 20 C 1.52978 * 109.07538 * 93.04312 * 11 10 9
21 21 H 1.09001 * 109.63668 * 66.06409 * 20 11 10
22 22 C 1.53604 * 109.81439 * 305.55392 * 20 11 10
23 23 N 1.47638 * 106.73622 * 300.25536 * 22 20 11
24 24 C 1.34783 * 122.06532 * 179.97438 * 23 22 20
25 25 O 1.21689 * 119.99967 * 184.72037 * 24 23 22
26 26 C 1.46680 * 119.99842 * 4.71928 * 24 23 22
27 27 C 1.37867 * 126.23308 * 174.13084 * 26 24 23
28 28 C 1.39831 * 107.08794 * 180.02562 * 27 26 24
29 29 C 1.35459 * 107.86256 * 359.97438 * 28 27 26
30 30 N 1.35532 * 108.86862 * 0.02562 * 29 28 27
31 31 H 0.97006 * 125.67292 * 180.02562 * 30 29 28
32 32 H 0.96999 * 119.99956 * 0.02562 * 1 2 3
33 33 H 1.09004 * 111.08169 * 100.40851 * 10 9 7
34 34 H 1.08998 * 109.81095 * 337.92775 * 10 9 7
35 35 H 1.09001 * 110.40640 * 21.68506 * 15 9 7
36 36 H 1.08997 * 110.51103 * 259.29667 * 15 9 7
37 37 H 1.09008 * 109.45120 * 59.36598 * 18 16 13
38 38 H 1.09003 * 109.45694 * 179.28869 * 18 16 13
39 39 H 1.09005 * 109.38418 * 120.87134 * 19 18 16
40 40 H 1.09006 * 109.38521 * 240.54334 * 19 18 16
41 41 H 1.09000 * 110.13574 * 180.87800 * 22 20 11
42 42 H 1.08996 * 109.86121 * 59.48653 * 22 20 11
43 43 H 1.08005 * 126.45436 * 0.04000 * 27 26 24
44 44 H 1.08000 * 126.07098 * 179.97438 * 28 27 26
45 45 H 1.07995 * 125.56058 * 180.26580 * 29 28 27
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2501 1.6178 0.0000
4 1 2.4976 2.0464 -1.4001
5 1 1.4476 2.6526 0.7001
6 1 3.5477 1.4401 0.7000
7 6 2.0102 -1.2021 -0.0005
8 1 3.0799 -1.2082 0.1483
9 7 1.3386 -2.3804 -0.1897
10 6 1.8180 -3.7676 0.1025
11 6 1.2947 -4.6147 -1.0774
12 1 1.0170 -5.6143 -0.7433
13 6 0.0757 -3.8216 -1.6252
14 1 -0.8298 -4.4264 -1.5775
15 6 -0.0294 -2.5709 -0.7256
16 6 0.3604 -3.3742 -3.0633
17 1 -0.4680 -2.7870 -3.4598
18 6 0.5991 -4.6175 -3.9281
19 6 1.8055 -5.3904 -3.3931
20 6 2.3738 -4.6852 -2.1595
21 1 3.2335 -5.2401 -1.7839
22 6 2.8084 -3.2659 -2.5547
23 7 1.6033 -2.5769 -3.0575
24 6 1.6370 -1.3010 -3.4906
25 8 0.6065 -0.7417 -3.8165
26 6 2.9157 -0.5866 -3.5691
27 6 3.1151 0.6718 -4.0958
28 6 4.4775 0.9596 -3.9678
29 6 5.0732 -0.1042 -3.3777
30 7 4.1351 -1.0506 -3.1306
31 1 4.2961 -1.9115 -2.7134
32 1 -0.4850 0.8400 -0.0004
33 1 1.4087 -4.1337 1.0441
34 1 2.9075 -3.7842 0.1286
35 1 -0.3314 -1.7041 -1.3134
36 1 -0.7366 -2.7443 0.0855
37 1 -0.2838 -5.2561 -3.8972
38 1 0.7904 -4.3129 -4.9570
39 1 1.4971 -6.4003 -3.1226
40 1 2.5729 -5.4430 -4.1655
41 1 3.5663 -3.3097 -3.3368
42 1 3.2006 -2.7425 -1.6828
43 1 2.3610 1.3144 -4.5259
44 1 4.9677 1.8687 -4.2834
45 1 6.1235 -0.1835 -3.1393
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001089772723.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:42
Heat of formation + Delta-G solvation = 43.427456 kcal
Electronic energy + Delta-G solvation = -29535.184857 eV
Core-core repulsion = 25939.752522 eV
Total energy + Delta-G solvation = -3595.432335 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.61784 -41.54293 -39.15792 -36.94827 -34.56222 -33.68745 -33.29248 -31.74743
-30.69003 -29.99926 -28.15785 -26.93513 -26.20177 -24.03895 -22.96379 -22.01147
-21.66377 -21.56157 -20.94384 -19.31571 -18.62846 -17.70836 -17.43183 -17.28099
-16.83948 -16.24760 -15.67397 -15.50901 -15.40948 -15.04801 -14.59845 -14.52066
-14.28816 -14.07922 -13.68136 -13.55758 -13.48004 -13.23634 -13.16002 -13.03408
-12.91348 -12.78090 -12.61751 -12.56449 -12.31176 -11.99990 -11.74265 -11.62944
-11.30056 -10.99637 -10.91791 -10.73621 -10.58555 -9.88146 -9.40967 -8.97982
-8.74776 -7.85222 -5.15728 0.66118 1.33964 1.41594 1.49123 1.90050
2.06700 2.41122 2.48629 2.64005 3.40148 3.60977 3.66128 3.76113
3.82799 3.93672 4.09272 4.17977 4.34598 4.35893 4.37741 4.45028
4.48898 4.52358 4.57553 4.59979 4.73867 4.77930 4.87616 5.03355
5.06842 5.15411 5.15892 5.21209 5.23171 5.30045 5.34870 5.39192
5.46123 5.50046 5.58228 5.72167 5.82461 5.88643 6.04095 6.26200
6.62098 6.68692 7.07039 7.36337 7.79705 8.57559 9.27816
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.012773 B = 0.008687 C = 0.006598
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2191.605574 B = 3222.446992 C = 4242.850833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.938 5.938
2 C -0.046 4.046
3 Si 0.934 3.066
4 H -0.288 1.288
5 H -0.309 1.309
6 H -0.262 1.262
7 C -0.200 4.200
8 H 0.075 0.925
9 N -0.602 5.602
10 C 0.119 3.881
11 C -0.078 4.078
12 H 0.110 0.890
13 C -0.112 4.112
14 H 0.092 0.908
15 C 0.170 3.830
16 C 0.152 3.848
17 H 0.055 0.945
18 C -0.119 4.119
19 C -0.102 4.102
20 C -0.079 4.079
21 H 0.119 0.881
22 C 0.102 3.898
23 N -0.576 5.576
24 C 0.594 3.406
25 O -0.598 6.598
26 C -0.050 4.050
27 C -0.153 4.153
28 C -0.228 4.228
29 C 0.029 3.971
30 N -0.527 5.527
31 H 0.427 0.573
32 H 0.236 0.764
33 H 0.018 0.982
34 H 0.063 0.937
35 H 0.040 0.960
36 H -0.020 1.020
37 H 0.090 0.910
38 H 0.056 0.944
39 H 0.093 0.907
40 H 0.075 0.925
41 H 0.077 0.923
42 H 0.070 0.930
43 H 0.116 0.884
44 H 0.159 0.841
45 H 0.217 0.783
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.731 -14.458 -7.474 20.063
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.586 5.586
2 C -0.241 4.241
3 Si 0.765 3.235
4 H -0.215 1.215
5 H -0.237 1.237
6 H -0.187 1.187
7 C -0.329 4.329
8 H 0.093 0.907
9 N -0.326 5.326
10 C -0.006 4.006
11 C -0.098 4.098
12 H 0.128 0.872
13 C -0.133 4.133
14 H 0.110 0.890
15 C 0.044 3.956
16 C 0.048 3.952
17 H 0.074 0.926
18 C -0.157 4.157
19 C -0.139 4.139
20 C -0.097 4.097
21 H 0.137 0.863
22 C -0.020 4.020
23 N -0.306 5.306
24 C 0.385 3.615
25 O -0.480 6.480
26 C -0.164 4.164
27 C -0.181 4.181
28 C -0.251 4.251
29 C -0.108 4.108
30 N -0.129 5.129
31 H 0.273 0.727
32 H 0.045 0.955
33 H 0.036 0.964
34 H 0.081 0.919
35 H 0.058 0.942
36 H -0.002 1.002
37 H 0.109 0.891
38 H 0.074 0.926
39 H 0.112 0.888
40 H 0.094 0.906
41 H 0.095 0.905
42 H 0.088 0.912
43 H 0.134 0.866
44 H 0.177 0.823
45 H 0.234 0.766
Dipole moment (debyes) X Y Z Total
from point charges 11.200 -14.127 -7.519 19.534
hybrid contribution -0.602 1.834 0.608 2.023
sum 10.599 -12.294 -6.911 17.642
Atomic orbital electron populations
1.70056 1.06415 1.24260 1.57917 1.25295 0.95669 1.00010 1.03113
0.85719 0.78344 0.81910 0.77571 1.21490 1.23670 1.18682 1.18829
0.90220 0.83076 1.40807 0.90730 1.45343 1.13862 1.00803 1.72594
1.22231 0.98051 0.84923 0.95385 1.22313 0.94020 0.98655 0.94797
0.87201 1.22849 0.99305 0.97017 0.94107 0.89028 1.21219 0.86596
0.94943 0.92862 1.21282 0.86272 0.91862 0.95748 0.92636 1.21901
1.00832 0.95061 0.97949 1.21493 0.96752 0.99292 0.96361 1.21447
0.99165 0.93248 0.95868 0.86288 1.22345 0.86940 0.94654 0.98081
1.47914 1.10813 1.10604 1.61301 1.17149 0.86848 0.81130 0.76408
1.90718 1.35353 1.67711 1.54216 1.20199 0.86076 0.98018 1.12113
1.21333 0.97932 0.94565 1.04220 1.21092 0.92773 1.01592 1.09682
1.22708 0.96471 0.89129 1.02468 1.42826 1.05991 1.17853 1.46218
0.72743 0.95476 0.96375 0.91868 0.94188 1.00227 0.89104 0.92556
0.88837 0.90609 0.90541 0.91190 0.86599 0.82293 0.76614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.94 -60.30 10.90 21.65 0.24 -60.07 16
2 C -0.05 -2.72 5.40 84.86 0.46 -2.27 16
3 Si 0.93 48.94 29.56 68.60 2.03 50.97 16
4 H -0.29 -15.63 7.11 99.48 0.71 -14.92 16
5 H -0.31 -16.78 7.11 99.48 0.71 -16.07 16
6 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16
7 C -0.20 -10.59 9.32 84.03 0.78 -9.81 16
8 H 0.08 3.76 7.85 -2.91 -0.02 3.74 16
9 N -0.60 -28.34 2.04 -684.11 -1.39 -29.74 16
10 C 0.12 4.12 6.08 86.24 0.52 4.64 16
11 C -0.08 -2.07 3.26 -9.50 -0.03 -2.10 16
12 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16
13 C -0.11 -3.90 3.20 -9.39 -0.03 -3.93 16
14 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16
15 C 0.17 8.38 5.00 86.54 0.43 8.81 16
16 C 0.15 5.32 2.80 44.97 0.13 5.45 16
17 H 0.06 2.40 7.20 -2.39 -0.02 2.38 16
18 C -0.12 -2.81 5.85 30.68 0.18 -2.63 16
19 C -0.10 -1.72 5.64 30.58 0.17 -1.55 16
20 C -0.08 -1.62 2.66 -10.58 -0.03 -1.65 16
21 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16
22 C 0.10 2.81 3.34 86.36 0.29 3.10 16
23 N -0.58 -21.49 1.95 -794.55 -1.55 -23.04 16
24 C 0.59 27.62 7.71 86.45 0.67 28.29 16
25 O -0.60 -33.74 16.49 -4.31 -0.07 -33.82 16
26 C -0.05 -2.06 6.84 40.35 0.28 -1.79 16
27 C -0.15 -6.33 10.66 22.57 0.24 -6.09 16
28 C -0.23 -7.20 10.81 22.01 0.24 -6.96 16
29 C 0.03 0.75 11.89 83.48 0.99 1.74 16
30 N -0.53 -16.21 5.40 -183.63 -0.99 -17.20 16
31 H 0.43 10.90 4.64 -92.70 -0.43 10.47 16
32 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16
33 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16
34 H 0.06 1.94 7.28 -2.39 -0.02 1.92 16
35 H 0.04 2.41 6.24 -2.39 -0.01 2.39 16
36 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16
37 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16
38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
39 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16
40 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16
41 H 0.08 1.70 6.87 -2.39 -0.02 1.69 16
42 H 0.07 2.24 4.26 -2.39 -0.01 2.23 16
43 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16
44 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16
45 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16
Total: -1.00 -83.29 338.22 4.12 -79.16
By element:
Atomic # 1 Polarization: 19.88 SS G_CDS: 0.58 Total: 20.46 kcal
Atomic # 6 Polarization: 7.97 SS G_CDS: 5.29 Total: 13.26 kcal
Atomic # 7 Polarization: -126.34 SS G_CDS: -3.70 Total: -130.04 kcal
Atomic # 8 Polarization: -33.74 SS G_CDS: -0.07 Total: -33.82 kcal
Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal
Total: -83.29 4.12 -79.16 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001089772723.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 122.592 kcal
(2) G-P(sol) polarization free energy of solvation -83.289 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.303 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.165 kcal
(6) G-S(sol) free energy of system = (1) + (5) 43.427 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds