Wall clock time and date at job start Tue Mar 31 2020 11:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99869 * 2 1 4 4 H 1.48499 * 109.46935 * 269.99879 * 3 2 1 5 5 H 1.48495 * 109.47176 * 30.00367 * 3 2 1 6 6 H 1.48501 * 109.46884 * 150.00242 * 3 2 1 7 7 C 1.38809 * 119.99965 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00135 * 189.15533 * 7 2 1 9 9 N 1.36938 * 120.00198 * 9.15133 * 7 2 1 10 10 C 1.49649 * 127.84936 * 196.38393 * 9 7 2 11 11 C 1.54386 * 104.52882 * 219.48239 * 10 9 7 12 12 H 1.08994 * 110.81134 * 215.21954 * 11 10 9 13 13 C 1.55408 * 104.78440 * 336.32244 * 11 10 9 14 14 H 1.09000 * 110.66848 * 239.25543 * 13 11 10 15 15 C 1.48156 * 127.83978 * 16.14903 * 9 7 2 16 16 C 1.53277 * 109.51091 * 116.64786 * 13 11 10 17 17 H 1.09004 * 110.93658 * 181.84006 * 16 13 11 18 18 C 1.53318 * 108.74839 * 60.12604 * 16 13 11 19 19 C 1.52929 * 109.59625 * 299.32958 * 18 16 13 20 20 C 1.52978 * 109.07538 * 93.04312 * 11 10 9 21 21 H 1.09001 * 109.63668 * 66.06409 * 20 11 10 22 22 C 1.53604 * 109.81439 * 305.55392 * 20 11 10 23 23 N 1.47638 * 106.73622 * 300.25536 * 22 20 11 24 24 C 1.34783 * 122.06532 * 179.97438 * 23 22 20 25 25 O 1.21689 * 119.99967 * 184.72037 * 24 23 22 26 26 C 1.46680 * 119.99842 * 4.71928 * 24 23 22 27 27 C 1.37867 * 126.23308 * 174.13084 * 26 24 23 28 28 C 1.39831 * 107.08794 * 180.02562 * 27 26 24 29 29 C 1.35459 * 107.86256 * 359.97438 * 28 27 26 30 30 N 1.35532 * 108.86862 * 0.02562 * 29 28 27 31 31 H 0.97006 * 125.67292 * 180.02562 * 30 29 28 32 32 H 0.96999 * 119.99956 * 0.02562 * 1 2 3 33 33 H 1.09004 * 111.08169 * 100.40851 * 10 9 7 34 34 H 1.08998 * 109.81095 * 337.92775 * 10 9 7 35 35 H 1.09001 * 110.40640 * 21.68506 * 15 9 7 36 36 H 1.08997 * 110.51103 * 259.29667 * 15 9 7 37 37 H 1.09008 * 109.45120 * 59.36598 * 18 16 13 38 38 H 1.09003 * 109.45694 * 179.28869 * 18 16 13 39 39 H 1.09005 * 109.38418 * 120.87134 * 19 18 16 40 40 H 1.09006 * 109.38521 * 240.54334 * 19 18 16 41 41 H 1.09000 * 110.13574 * 180.87800 * 22 20 11 42 42 H 1.08996 * 109.86121 * 59.48653 * 22 20 11 43 43 H 1.08005 * 126.45436 * 0.04000 * 27 26 24 44 44 H 1.08000 * 126.07098 * 179.97438 * 28 27 26 45 45 H 1.07995 * 125.56058 * 180.26580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0799 -1.2082 0.1483 9 7 1.3386 -2.3804 -0.1897 10 6 1.8180 -3.7676 0.1025 11 6 1.2947 -4.6147 -1.0774 12 1 1.0170 -5.6143 -0.7433 13 6 0.0757 -3.8216 -1.6252 14 1 -0.8298 -4.4264 -1.5775 15 6 -0.0294 -2.5709 -0.7256 16 6 0.3604 -3.3742 -3.0633 17 1 -0.4680 -2.7870 -3.4598 18 6 0.5991 -4.6175 -3.9281 19 6 1.8055 -5.3904 -3.3931 20 6 2.3738 -4.6852 -2.1595 21 1 3.2335 -5.2401 -1.7839 22 6 2.8084 -3.2659 -2.5547 23 7 1.6033 -2.5769 -3.0575 24 6 1.6370 -1.3010 -3.4906 25 8 0.6065 -0.7417 -3.8165 26 6 2.9157 -0.5866 -3.5691 27 6 3.1151 0.6718 -4.0958 28 6 4.4775 0.9596 -3.9678 29 6 5.0732 -0.1042 -3.3777 30 7 4.1351 -1.0506 -3.1306 31 1 4.2961 -1.9115 -2.7134 32 1 -0.4850 0.8400 -0.0004 33 1 1.4087 -4.1337 1.0441 34 1 2.9075 -3.7842 0.1286 35 1 -0.3314 -1.7041 -1.3134 36 1 -0.7366 -2.7443 0.0855 37 1 -0.2838 -5.2561 -3.8972 38 1 0.7904 -4.3129 -4.9570 39 1 1.4971 -6.4003 -3.1226 40 1 2.5729 -5.4430 -4.1655 41 1 3.5663 -3.3097 -3.3368 42 1 3.2006 -2.7425 -1.6828 43 1 2.3610 1.3144 -4.5259 44 1 4.9677 1.8687 -4.2834 45 1 6.1235 -0.1835 -3.1393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001089772723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:42 Heat of formation + Delta-G solvation = 43.427456 kcal Electronic energy + Delta-G solvation = -29535.184857 eV Core-core repulsion = 25939.752522 eV Total energy + Delta-G solvation = -3595.432335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.61784 -41.54293 -39.15792 -36.94827 -34.56222 -33.68745 -33.29248 -31.74743 -30.69003 -29.99926 -28.15785 -26.93513 -26.20177 -24.03895 -22.96379 -22.01147 -21.66377 -21.56157 -20.94384 -19.31571 -18.62846 -17.70836 -17.43183 -17.28099 -16.83948 -16.24760 -15.67397 -15.50901 -15.40948 -15.04801 -14.59845 -14.52066 -14.28816 -14.07922 -13.68136 -13.55758 -13.48004 -13.23634 -13.16002 -13.03408 -12.91348 -12.78090 -12.61751 -12.56449 -12.31176 -11.99990 -11.74265 -11.62944 -11.30056 -10.99637 -10.91791 -10.73621 -10.58555 -9.88146 -9.40967 -8.97982 -8.74776 -7.85222 -5.15728 0.66118 1.33964 1.41594 1.49123 1.90050 2.06700 2.41122 2.48629 2.64005 3.40148 3.60977 3.66128 3.76113 3.82799 3.93672 4.09272 4.17977 4.34598 4.35893 4.37741 4.45028 4.48898 4.52358 4.57553 4.59979 4.73867 4.77930 4.87616 5.03355 5.06842 5.15411 5.15892 5.21209 5.23171 5.30045 5.34870 5.39192 5.46123 5.50046 5.58228 5.72167 5.82461 5.88643 6.04095 6.26200 6.62098 6.68692 7.07039 7.36337 7.79705 8.57559 9.27816 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.008687 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.605574 B = 3222.446992 C = 4242.850833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.046 4.046 3 Si 0.934 3.066 4 H -0.288 1.288 5 H -0.309 1.309 6 H -0.262 1.262 7 C -0.200 4.200 8 H 0.075 0.925 9 N -0.602 5.602 10 C 0.119 3.881 11 C -0.078 4.078 12 H 0.110 0.890 13 C -0.112 4.112 14 H 0.092 0.908 15 C 0.170 3.830 16 C 0.152 3.848 17 H 0.055 0.945 18 C -0.119 4.119 19 C -0.102 4.102 20 C -0.079 4.079 21 H 0.119 0.881 22 C 0.102 3.898 23 N -0.576 5.576 24 C 0.594 3.406 25 O -0.598 6.598 26 C -0.050 4.050 27 C -0.153 4.153 28 C -0.228 4.228 29 C 0.029 3.971 30 N -0.527 5.527 31 H 0.427 0.573 32 H 0.236 0.764 33 H 0.018 0.982 34 H 0.063 0.937 35 H 0.040 0.960 36 H -0.020 1.020 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.093 0.907 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.116 0.884 44 H 0.159 0.841 45 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.731 -14.458 -7.474 20.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.765 3.235 4 H -0.215 1.215 5 H -0.237 1.237 6 H -0.187 1.187 7 C -0.329 4.329 8 H 0.093 0.907 9 N -0.326 5.326 10 C -0.006 4.006 11 C -0.098 4.098 12 H 0.128 0.872 13 C -0.133 4.133 14 H 0.110 0.890 15 C 0.044 3.956 16 C 0.048 3.952 17 H 0.074 0.926 18 C -0.157 4.157 19 C -0.139 4.139 20 C -0.097 4.097 21 H 0.137 0.863 22 C -0.020 4.020 23 N -0.306 5.306 24 C 0.385 3.615 25 O -0.480 6.480 26 C -0.164 4.164 27 C -0.181 4.181 28 C -0.251 4.251 29 C -0.108 4.108 30 N -0.129 5.129 31 H 0.273 0.727 32 H 0.045 0.955 33 H 0.036 0.964 34 H 0.081 0.919 35 H 0.058 0.942 36 H -0.002 1.002 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.134 0.866 44 H 0.177 0.823 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 11.200 -14.127 -7.519 19.534 hybrid contribution -0.602 1.834 0.608 2.023 sum 10.599 -12.294 -6.911 17.642 Atomic orbital electron populations 1.70056 1.06415 1.24260 1.57917 1.25295 0.95669 1.00010 1.03113 0.85719 0.78344 0.81910 0.77571 1.21490 1.23670 1.18682 1.18829 0.90220 0.83076 1.40807 0.90730 1.45343 1.13862 1.00803 1.72594 1.22231 0.98051 0.84923 0.95385 1.22313 0.94020 0.98655 0.94797 0.87201 1.22849 0.99305 0.97017 0.94107 0.89028 1.21219 0.86596 0.94943 0.92862 1.21282 0.86272 0.91862 0.95748 0.92636 1.21901 1.00832 0.95061 0.97949 1.21493 0.96752 0.99292 0.96361 1.21447 0.99165 0.93248 0.95868 0.86288 1.22345 0.86940 0.94654 0.98081 1.47914 1.10813 1.10604 1.61301 1.17149 0.86848 0.81130 0.76408 1.90718 1.35353 1.67711 1.54216 1.20199 0.86076 0.98018 1.12113 1.21333 0.97932 0.94565 1.04220 1.21092 0.92773 1.01592 1.09682 1.22708 0.96471 0.89129 1.02468 1.42826 1.05991 1.17853 1.46218 0.72743 0.95476 0.96375 0.91868 0.94188 1.00227 0.89104 0.92556 0.88837 0.90609 0.90541 0.91190 0.86599 0.82293 0.76614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.30 10.90 21.65 0.24 -60.07 16 2 C -0.05 -2.72 5.40 84.86 0.46 -2.27 16 3 Si 0.93 48.94 29.56 68.60 2.03 50.97 16 4 H -0.29 -15.63 7.11 99.48 0.71 -14.92 16 5 H -0.31 -16.78 7.11 99.48 0.71 -16.07 16 6 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.20 -10.59 9.32 84.03 0.78 -9.81 16 8 H 0.08 3.76 7.85 -2.91 -0.02 3.74 16 9 N -0.60 -28.34 2.04 -684.11 -1.39 -29.74 16 10 C 0.12 4.12 6.08 86.24 0.52 4.64 16 11 C -0.08 -2.07 3.26 -9.50 -0.03 -2.10 16 12 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 13 C -0.11 -3.90 3.20 -9.39 -0.03 -3.93 16 14 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 15 C 0.17 8.38 5.00 86.54 0.43 8.81 16 16 C 0.15 5.32 2.80 44.97 0.13 5.45 16 17 H 0.06 2.40 7.20 -2.39 -0.02 2.38 16 18 C -0.12 -2.81 5.85 30.68 0.18 -2.63 16 19 C -0.10 -1.72 5.64 30.58 0.17 -1.55 16 20 C -0.08 -1.62 2.66 -10.58 -0.03 -1.65 16 21 H 0.12 1.66 8.14 -2.39 -0.02 1.65 16 22 C 0.10 2.81 3.34 86.36 0.29 3.10 16 23 N -0.58 -21.49 1.95 -794.55 -1.55 -23.04 16 24 C 0.59 27.62 7.71 86.45 0.67 28.29 16 25 O -0.60 -33.74 16.49 -4.31 -0.07 -33.82 16 26 C -0.05 -2.06 6.84 40.35 0.28 -1.79 16 27 C -0.15 -6.33 10.66 22.57 0.24 -6.09 16 28 C -0.23 -7.20 10.81 22.01 0.24 -6.96 16 29 C 0.03 0.75 11.89 83.48 0.99 1.74 16 30 N -0.53 -16.21 5.40 -183.63 -0.99 -17.20 16 31 H 0.43 10.90 4.64 -92.70 -0.43 10.47 16 32 H 0.24 15.39 8.31 -92.71 -0.77 14.62 16 33 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.06 1.94 7.28 -2.39 -0.02 1.92 16 35 H 0.04 2.41 6.24 -2.39 -0.01 2.39 16 36 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 37 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 38 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 40 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.08 1.70 6.87 -2.39 -0.02 1.69 16 42 H 0.07 2.24 4.26 -2.39 -0.01 2.23 16 43 H 0.12 5.11 8.06 -2.91 -0.02 5.09 16 44 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 45 H 0.22 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -83.29 338.22 4.12 -79.16 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.58 Total: 20.46 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.29 Total: 13.26 kcal Atomic # 7 Polarization: -126.34 SS G_CDS: -3.70 Total: -130.04 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.07 Total: -33.82 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.03 Total: 50.97 kcal Total: -83.29 4.12 -79.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089772723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.592 kcal (2) G-P(sol) polarization free energy of solvation -83.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds