Wall clock time and date at job start Tue Mar 31 2020 11:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 12 12 C 1.53788 * 87.07960 * 220.01802 * 11 10 9 13 13 C 1.53006 * 113.61312 * 139.98048 * 12 11 10 14 14 N 1.46505 * 109.47014 * 87.50229 * 13 12 11 15 15 C 1.34772 * 119.99764 * 179.97438 * 14 13 12 16 16 O 1.21282 * 120.00219 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99970 * 179.97438 * 15 14 13 18 18 H 1.09005 * 115.54891 * 34.42273 * 17 15 14 19 19 C 1.52998 * 117.50238 * 248.75015 * 17 15 14 20 20 C 1.52997 * 117.49986 * 180.08682 * 17 15 14 21 21 H 1.08999 * 117.49797 * 359.97438 * 20 17 15 22 22 C 1.50703 * 117.50225 * 214.98150 * 20 17 15 23 23 C 1.38652 * 120.78647 * 299.72096 * 22 20 17 24 24 C 1.38207 * 119.15913 * 179.75084 * 23 22 20 25 25 N 1.31864 * 120.76436 * 0.53320 * 24 23 22 26 26 C 1.31872 * 121.72872 * 359.74001 * 25 24 23 27 27 C 1.38203 * 120.76186 * 359.97438 * 26 25 24 28 28 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 32 32 H 1.08999 * 113.61640 * 334.56560 * 11 10 9 33 33 H 1.08997 * 113.61899 * 105.47187 * 11 10 9 34 34 H 1.08998 * 113.61516 * 270.88230 * 12 11 10 35 35 H 1.08995 * 109.46598 * 207.50173 * 13 12 11 36 36 H 1.08994 * 109.46744 * 327.50169 * 13 12 11 37 37 H 0.97003 * 119.99866 * 359.97438 * 14 13 12 38 38 H 1.09001 * 117.49465 * 359.97438 * 19 17 15 39 39 H 1.08995 * 117.50027 * 144.99565 * 19 17 15 40 40 H 1.07997 * 120.41950 * 0.02562 * 23 22 20 41 41 H 1.08007 * 119.61641 * 180.29486 * 24 23 22 42 42 H 1.07999 * 119.62043 * 180.02562 * 26 25 24 43 43 H 1.08007 * 120.41858 * 180.02562 * 27 26 25 44 44 H 1.08994 * 113.61573 * 254.52493 * 28 10 9 45 45 H 1.09004 * 113.60919 * 25.43453 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.9999 -4.4015 -1.3458 12 6 1.8482 -5.6974 -0.5316 13 6 0.8455 -6.6847 -1.1323 14 7 1.5273 -7.5423 -2.1049 15 6 0.8377 -8.4944 -2.7639 16 8 -0.3475 -8.6409 -2.5521 17 6 1.5389 -9.3762 -3.7647 18 1 2.5725 -9.6278 -3.5267 19 6 1.1775 -9.1960 -5.2405 20 6 0.7007 -10.4367 -4.4813 21 1 -0.3578 -10.4970 -4.2285 22 6 1.3674 -11.7491 -4.8046 23 6 2.4842 -11.7946 -5.6250 24 6 3.0720 -13.0159 -5.8952 25 7 2.5763 -14.1292 -5.3913 26 6 1.5125 -14.1243 -4.6120 27 6 0.8751 -12.9402 -4.2933 28 6 1.2597 -4.8290 0.5929 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 3.0652 -3.5640 0.4046 32 1 1.1221 -4.1561 -1.9434 33 1 2.9284 -4.3494 -1.9144 34 1 2.7986 -6.1634 -0.2714 35 1 0.4222 -7.3004 -0.3388 36 1 0.0472 -6.1341 -1.6300 37 1 2.4752 -7.4248 -2.2745 38 1 0.4322 -8.4399 -5.4874 39 1 1.9733 -9.3290 -5.9733 40 1 2.8923 -10.8867 -6.0439 41 1 3.9451 -13.0594 -6.5294 42 1 1.1356 -15.0563 -4.2175 43 1 0.0045 -12.9426 -3.6542 44 1 1.5905 -5.1219 1.5892 45 1 0.1794 -4.7004 0.5251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091034607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:33 Heat of formation + Delta-G solvation = 50.611750 kcal Electronic energy + Delta-G solvation = -24326.527600 eV Core-core repulsion = 20731.406800 eV Total energy + Delta-G solvation = -3595.120800 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93833 -39.99730 -38.73971 -37.10160 -34.84507 -33.62339 -32.42427 -31.60767 -30.16689 -27.78113 -25.25603 -25.16545 -24.45790 -23.72040 -23.32652 -21.40545 -21.21448 -20.36386 -19.13262 -18.02261 -17.37426 -17.06876 -16.52339 -16.17606 -15.91569 -15.51556 -15.03077 -14.99114 -14.43667 -14.26307 -14.17068 -13.95549 -13.78944 -13.48359 -13.19186 -12.84948 -12.46019 -12.06074 -12.05994 -11.97632 -11.65793 -11.51638 -11.02885 -11.00958 -10.78158 -10.44746 -10.36614 -10.06344 -10.01001 -9.91955 -9.89769 -9.66344 -9.58882 -9.18766 -9.11846 -8.90652 -7.07259 -6.14309 -3.14427 0.69730 0.73037 2.26313 2.89756 3.25245 3.49140 3.52551 3.58431 3.70307 3.95720 4.04433 4.19360 4.30795 4.43056 4.62482 4.63367 4.66116 4.73161 4.76931 4.85073 4.89522 5.10156 5.12719 5.22921 5.36848 5.37611 5.44539 5.44888 5.46550 5.64150 5.70788 5.72748 5.82288 5.88301 5.93280 6.13711 6.17093 6.22240 6.25584 6.33160 6.47102 6.68284 6.98048 7.33376 7.54751 7.76988 8.03686 8.71397 9.18309 10.04706 10.19682 11.33734 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.001784 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.696891 B =15688.408567 C =15909.126698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.045 4.045 3 Si 1.080 2.920 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.337 4.337 8 H 0.065 0.935 9 N -0.724 5.724 10 C 0.171 3.829 11 C -0.160 4.160 12 C -0.126 4.126 13 C 0.132 3.868 14 N -0.719 5.719 15 C 0.539 3.461 16 O -0.542 6.542 17 C -0.172 4.172 18 H 0.126 0.874 19 C -0.139 4.139 20 C -0.092 4.092 21 H 0.132 0.868 22 C -0.007 4.007 23 C -0.174 4.174 24 C 0.101 3.899 25 N -0.490 5.490 26 C 0.101 3.899 27 C -0.163 4.163 28 C -0.144 4.144 29 H 0.255 0.745 30 H 0.368 0.632 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.402 0.598 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.137 0.863 44 H 0.062 0.938 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.910 -26.274 -10.381 28.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.243 4.243 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.468 4.468 8 H 0.083 0.917 9 N -0.363 5.363 10 C 0.059 3.941 11 C -0.201 4.201 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.369 5.369 15 C 0.325 3.675 16 O -0.419 6.419 17 C -0.194 4.194 18 H 0.144 0.856 19 C -0.177 4.177 20 C -0.110 4.110 21 H 0.150 0.850 22 C -0.015 4.015 23 C -0.194 4.194 24 C -0.056 4.056 25 N -0.199 5.199 26 C -0.056 4.056 27 C -0.183 4.183 28 C -0.184 4.184 29 H 0.066 0.934 30 H 0.202 0.798 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.236 0.764 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.154 0.846 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.155 0.845 44 H 0.081 0.919 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.514 -25.418 -10.379 28.003 hybrid contribution 0.034 -0.869 0.157 0.883 sum 5.548 -26.286 -10.222 28.745 Atomic orbital electron populations 1.70889 1.06056 1.28464 1.53299 1.25813 0.97055 1.01115 1.00279 0.83238 0.74228 0.75580 0.75854 1.21003 1.22229 1.22249 1.20098 0.92064 0.85916 1.48705 0.91681 1.42414 1.04779 1.00883 1.88265 1.21458 0.95309 0.84540 0.92779 1.23937 1.01351 0.94927 0.99924 1.22634 0.98434 0.94382 0.99102 1.21457 0.95281 0.91560 0.90804 1.45959 1.13379 1.35015 1.42555 1.19537 0.86807 0.80292 0.80869 1.90714 1.15428 1.70208 1.65561 1.22347 1.00825 1.01541 0.94654 0.85619 1.23173 1.03686 0.99182 0.91631 1.21104 0.99932 0.86701 1.03300 0.84988 1.19542 0.93908 0.93764 0.94276 1.22087 0.97106 1.00032 1.00161 1.22771 0.98553 0.87601 0.96660 1.67684 1.11691 1.31236 1.09336 1.22794 0.91202 0.97950 0.93642 1.22052 1.02019 0.92780 1.01464 1.23464 1.00886 0.97144 0.96880 0.93370 0.79815 0.90530 0.90515 0.92649 0.89257 0.91665 0.91222 0.76418 0.87245 0.87163 0.84567 0.82642 0.82579 0.84488 0.91877 0.90277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.08 13.70 55.49 0.76 -28.32 16 2 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 3 Si 1.08 25.69 29.92 -169.99 -5.09 20.61 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.34 -9.39 9.97 -15.06 -0.15 -9.54 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -17.91 5.40 -52.64 -0.28 -18.19 16 10 C 0.17 3.28 4.48 -67.12 -0.30 2.98 16 11 C -0.16 -2.58 7.43 -25.91 -0.19 -2.77 16 12 C -0.13 -1.62 3.76 -89.80 -0.34 -1.95 16 13 C 0.13 1.66 5.51 -4.04 -0.02 1.64 16 14 N -0.72 -7.55 5.56 -60.29 -0.33 -7.89 16 15 C 0.54 6.24 7.61 -10.99 -0.08 6.15 16 16 O -0.54 -8.42 16.26 5.56 0.09 -8.33 16 17 C -0.17 -1.38 5.84 -91.78 -0.54 -1.91 16 18 H 0.13 0.78 8.14 -51.93 -0.42 0.36 16 19 C -0.14 -0.94 9.59 -26.69 -0.26 -1.20 16 20 C -0.09 -0.73 5.59 -91.73 -0.51 -1.24 16 21 H 0.13 1.22 7.67 -51.93 -0.40 0.83 16 22 C -0.01 -0.05 5.64 -104.32 -0.59 -0.64 16 23 C -0.17 -1.14 9.39 -39.44 -0.37 -1.51 16 24 C 0.10 0.72 11.18 -17.55 -0.20 0.53 16 25 N -0.49 -4.40 10.36 -13.25 -0.14 -4.54 16 26 C 0.10 0.76 11.18 -17.55 -0.20 0.57 16 27 C -0.16 -1.21 9.84 -39.44 -0.39 -1.59 16 28 C -0.14 -2.24 7.39 -25.92 -0.19 -2.43 16 29 H 0.26 7.75 6.77 -40.82 -0.28 7.48 16 30 H 0.37 9.43 6.75 -40.82 -0.28 9.16 16 31 H 0.08 1.48 8.10 -51.93 -0.42 1.05 16 32 H 0.08 1.37 7.90 -51.93 -0.41 0.96 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.01 7.84 -51.93 -0.41 0.60 16 37 H 0.40 3.21 8.47 -40.82 -0.35 2.86 16 38 H 0.11 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.11 0.51 6.25 -51.93 -0.32 0.18 16 40 H 0.14 0.59 6.16 -52.49 -0.32 0.27 16 41 H 0.16 0.72 8.06 -52.48 -0.42 0.30 16 42 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 LS Contribution 377.27 15.07 5.69 5.69 Total: -1.00 -34.70 377.27 -10.34 -45.04 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -6.61 Total: 10.27 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -4.42 Total: -14.33 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: 0.00 Total: -58.94 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 14 Polarization: 25.69 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.70 -10.34 -45.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091034607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.649 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds