Wall clock time and date at job start Tue Mar 31 2020 11:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48501 * 109.47055 * 0.02562 * 3 2 1 5 5 H 1.48505 * 109.46653 * 119.99764 * 3 2 1 6 6 H 1.48495 * 109.47483 * 240.00126 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 12 12 C 1.53788 * 87.07960 * 220.01802 * 11 10 9 13 13 C 1.53006 * 113.61312 * 139.98048 * 12 11 10 14 14 N 1.46505 * 109.47014 * 87.50229 * 13 12 11 15 15 C 1.34772 * 119.99764 * 179.97438 * 14 13 12 16 16 O 1.21282 * 120.00219 * 0.02562 * 15 14 13 17 17 C 1.50697 * 119.99970 * 179.97438 * 15 14 13 18 18 H 1.09005 * 115.54891 * 34.42273 * 17 15 14 19 19 C 1.52998 * 117.50238 * 248.75015 * 17 15 14 20 20 C 1.52997 * 117.49986 * 180.08682 * 17 15 14 21 21 H 1.08999 * 117.49797 * 359.97438 * 20 17 15 22 22 C 1.50703 * 117.50225 * 214.98150 * 20 17 15 23 23 C 1.38652 * 120.78647 * 299.72096 * 22 20 17 24 24 C 1.38207 * 119.15913 * 179.75084 * 23 22 20 25 25 N 1.31864 * 120.76436 * 0.53320 * 24 23 22 26 26 C 1.31872 * 121.72872 * 359.74001 * 25 24 23 27 27 C 1.38203 * 120.76186 * 359.97438 * 26 25 24 28 28 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 29 29 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 30 30 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 31 31 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 32 32 H 1.08999 * 113.61640 * 334.56560 * 11 10 9 33 33 H 1.08997 * 113.61899 * 105.47187 * 11 10 9 34 34 H 1.08998 * 113.61516 * 270.88230 * 12 11 10 35 35 H 1.08995 * 109.46598 * 207.50173 * 13 12 11 36 36 H 1.08994 * 109.46744 * 327.50169 * 13 12 11 37 37 H 0.97003 * 119.99866 * 359.97438 * 14 13 12 38 38 H 1.09001 * 117.49465 * 359.97438 * 19 17 15 39 39 H 1.08995 * 117.50027 * 144.99565 * 19 17 15 40 40 H 1.07997 * 120.41950 * 0.02562 * 23 22 20 41 41 H 1.08007 * 119.61641 * 180.29486 * 24 23 22 42 42 H 1.07999 * 119.62043 * 180.02562 * 26 25 24 43 43 H 1.08007 * 120.41858 * 180.02562 * 27 26 25 44 44 H 1.08994 * 113.61573 * 254.52493 * 28 10 9 45 45 H 1.09004 * 113.60919 * 25.43453 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7465 0.0006 5 1 3.1040 1.6962 1.2126 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.9999 -4.4015 -1.3458 12 6 1.8482 -5.6974 -0.5316 13 6 0.8455 -6.6847 -1.1323 14 7 1.5273 -7.5423 -2.1049 15 6 0.8377 -8.4944 -2.7639 16 8 -0.3475 -8.6409 -2.5521 17 6 1.5389 -9.3762 -3.7647 18 1 2.5725 -9.6278 -3.5267 19 6 1.1775 -9.1960 -5.2405 20 6 0.7007 -10.4367 -4.4813 21 1 -0.3578 -10.4970 -4.2285 22 6 1.3674 -11.7491 -4.8046 23 6 2.4842 -11.7946 -5.6250 24 6 3.0720 -13.0159 -5.8952 25 7 2.5763 -14.1292 -5.3913 26 6 1.5125 -14.1243 -4.6120 27 6 0.8751 -12.9402 -4.2933 28 6 1.2597 -4.8290 0.5929 29 1 -0.4850 -0.8401 -0.0004 30 1 0.3556 -2.3880 -0.0016 31 1 3.0652 -3.5640 0.4046 32 1 1.1221 -4.1561 -1.9434 33 1 2.9284 -4.3494 -1.9144 34 1 2.7986 -6.1634 -0.2714 35 1 0.4222 -7.3004 -0.3388 36 1 0.0472 -6.1341 -1.6300 37 1 2.4752 -7.4248 -2.2745 38 1 0.4322 -8.4399 -5.4874 39 1 1.9733 -9.3290 -5.9733 40 1 2.8923 -10.8867 -6.0439 41 1 3.9451 -13.0594 -6.5294 42 1 1.1356 -15.0563 -4.2175 43 1 0.0045 -12.9426 -3.6542 44 1 1.5905 -5.1219 1.5892 45 1 0.1794 -4.7004 0.5251 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091034607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:32 Heat of formation + Delta-G solvation = 27.913004 kcal Electronic energy + Delta-G solvation = -24327.511892 eV Core-core repulsion = 20731.406800 eV Total energy + Delta-G solvation = -3596.105092 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57990 -40.83431 -39.99048 -37.83241 -36.28437 -35.21668 -32.99467 -32.11444 -31.98145 -29.02534 -26.56082 -26.07916 -25.56619 -24.89090 -24.10805 -22.60426 -21.93498 -21.29735 -20.42015 -19.37169 -18.67380 -17.80757 -17.22003 -17.06611 -16.76246 -16.42657 -16.40891 -16.16384 -15.67539 -15.22102 -15.16260 -15.06137 -14.81950 -14.51081 -14.34964 -13.57821 -13.47110 -13.34917 -13.14951 -12.98222 -12.64675 -12.59167 -12.55269 -12.15975 -12.06683 -11.83636 -11.67549 -11.63772 -11.41526 -11.11958 -10.93249 -10.82033 -10.44441 -10.27568 -10.13854 -10.08754 -9.09819 -8.39889 -5.33542 0.18494 0.20521 1.41604 1.58254 1.68395 1.84567 2.05875 2.65289 2.72101 3.01518 3.34022 3.38408 3.55692 3.60152 3.62300 3.64927 3.73935 3.77643 3.90736 4.05175 4.08974 4.16651 4.20810 4.23895 4.26665 4.31890 4.46428 4.61189 4.69641 4.75625 4.87088 4.87285 4.88452 4.91979 4.94799 4.97070 5.10845 5.13066 5.26935 5.36694 5.41143 5.58630 5.64153 5.77268 6.47983 6.50272 7.03473 7.09036 7.18022 7.99492 8.12335 9.11703 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033457 B = 0.001784 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.696891 B =15688.408567 C =15909.126698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.109 4.109 3 Si 1.129 2.871 4 H -0.295 1.295 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.333 4.333 8 H 0.070 0.930 9 N -0.742 5.742 10 C 0.146 3.854 11 C -0.151 4.151 12 C -0.093 4.093 13 C 0.138 3.862 14 N -0.708 5.708 15 C 0.534 3.466 16 O -0.589 6.589 17 C -0.169 4.169 18 H 0.153 0.847 19 C -0.125 4.125 20 C -0.097 4.097 21 H 0.111 0.889 22 C -0.015 4.015 23 C -0.169 4.169 24 C 0.091 3.909 25 N -0.518 5.518 26 C 0.090 3.910 27 C -0.174 4.174 28 C -0.139 4.139 29 H 0.242 0.758 30 H 0.358 0.642 31 H 0.079 0.921 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.123 0.877 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.418 0.582 38 H 0.098 0.902 39 H 0.141 0.859 40 H 0.163 0.837 41 H 0.179 0.821 42 H 0.173 0.827 43 H 0.142 0.858 44 H 0.079 0.921 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.722 -27.371 -11.188 30.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.300 4.300 3 Si 0.953 3.047 4 H -0.222 1.222 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.465 4.465 8 H 0.088 0.912 9 N -0.382 5.382 10 C 0.037 3.963 11 C -0.192 4.192 12 C -0.112 4.112 13 C 0.014 3.986 14 N -0.359 5.359 15 C 0.322 3.678 16 O -0.470 6.470 17 C -0.191 4.191 18 H 0.171 0.829 19 C -0.162 4.162 20 C -0.115 4.115 21 H 0.129 0.871 22 C -0.023 4.023 23 C -0.188 4.188 24 C -0.065 4.065 25 N -0.228 5.228 26 C -0.066 4.066 27 C -0.194 4.194 28 C -0.178 4.178 29 H 0.053 0.947 30 H 0.190 0.810 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.141 0.859 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.255 0.745 38 H 0.117 0.883 39 H 0.158 0.842 40 H 0.180 0.820 41 H 0.196 0.804 42 H 0.190 0.810 43 H 0.160 0.840 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.398 -26.579 -11.194 30.037 hybrid contribution -0.836 -0.613 0.410 1.115 sum 7.562 -27.191 -10.784 30.213 Atomic orbital electron populations 1.71002 1.07288 1.27786 1.56481 1.27256 0.97116 1.04889 1.00735 0.82618 0.73351 0.71494 0.77217 1.22167 1.20228 1.20265 1.20484 0.92506 0.87162 1.46300 0.91167 1.42647 1.04531 1.02094 1.88910 1.21913 0.95508 0.83465 0.95432 1.23703 1.01085 0.96040 0.98372 1.22454 0.99500 0.92914 0.96288 1.21210 0.94771 0.91531 0.91055 1.45825 1.14080 1.34234 1.41760 1.20172 0.86357 0.80322 0.80950 1.90698 1.17648 1.71529 1.67087 1.22338 1.01512 1.00872 0.94331 0.82949 1.23297 1.03911 0.97764 0.91261 1.20980 0.98987 0.87469 1.04087 0.87088 1.19598 0.94488 0.93351 0.94844 1.22316 0.96345 1.00837 0.99325 1.23221 0.99184 0.87435 0.96651 1.67702 1.12454 1.32437 1.10208 1.23086 0.91095 0.98757 0.93615 1.22212 1.02373 0.93015 1.01769 1.23348 0.99826 0.95964 0.98665 0.94729 0.80996 0.90324 0.92723 0.91226 0.85877 0.91732 0.93613 0.74506 0.88310 0.84158 0.81997 0.80413 0.81013 0.83972 0.90283 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.87 13.70 21.65 0.30 -61.57 16 2 C -0.11 -6.36 5.50 84.86 0.47 -5.89 16 3 Si 1.13 51.69 29.92 68.60 2.05 53.74 16 4 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.33 -18.61 9.97 84.03 0.84 -17.77 16 8 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 9 N -0.74 -37.21 5.40 -320.46 -1.73 -38.94 16 10 C 0.15 5.47 4.48 45.52 0.20 5.68 16 11 C -0.15 -4.66 7.43 31.12 0.23 -4.43 16 12 C -0.09 -2.14 3.76 -10.26 -0.04 -2.18 16 13 C 0.14 3.29 5.51 86.38 0.48 3.76 16 14 N -0.71 -13.33 5.56 -463.06 -2.57 -15.91 16 15 C 0.53 11.70 7.61 87.66 0.67 12.37 16 16 O -0.59 -18.48 16.26 -3.04 -0.05 -18.53 16 17 C -0.17 -2.31 5.84 -11.54 -0.07 -2.38 16 18 H 0.15 1.28 8.14 -2.38 -0.02 1.26 16 19 C -0.13 -1.39 9.59 30.62 0.29 -1.09 16 20 C -0.10 -1.41 5.59 -11.51 -0.06 -1.48 16 21 H 0.11 2.11 7.67 -2.39 -0.02 2.09 16 22 C -0.01 -0.20 5.64 -19.67 -0.11 -0.31 16 23 C -0.17 -1.73 9.39 22.36 0.21 -1.52 16 24 C 0.09 1.11 11.18 84.68 0.95 2.06 16 25 N -0.52 -8.67 10.36 -195.84 -2.03 -10.69 16 26 C 0.09 1.30 11.18 84.68 0.95 2.24 16 27 C -0.17 -2.44 9.84 22.36 0.22 -2.22 16 28 C -0.14 -4.13 7.39 31.12 0.23 -3.90 16 29 H 0.24 15.34 6.77 -92.71 -0.63 14.72 16 30 H 0.36 19.04 6.75 -92.71 -0.63 18.42 16 31 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 32 H 0.05 1.94 7.90 -2.39 -0.02 1.93 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.33 7.84 -2.39 -0.02 1.31 16 37 H 0.42 5.17 8.47 -92.71 -0.79 4.38 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.14 0.70 6.25 -2.39 -0.01 0.69 16 40 H 0.16 0.71 6.16 -2.91 -0.02 0.70 16 41 H 0.18 1.16 8.06 -2.91 -0.02 1.14 16 42 H 0.17 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 44 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.07 2.17 8.08 -2.39 -0.02 2.15 16 Total: -1.00 -77.58 377.27 1.16 -76.42 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -0.26 Total: 32.55 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 5.45 Total: -17.07 kcal Atomic # 7 Polarization: -121.08 SS G_CDS: -6.04 Total: -127.11 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.05 Total: -18.53 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.05 Total: 53.74 kcal Total: -77.58 1.16 -76.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091034607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.331 kcal (2) G-P(sol) polarization free energy of solvation -77.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds