Wall clock time and date at job start Tue Mar 31 2020 10:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86798 * 120.00136 * 2 1 4 4 H 1.48503 * 109.47241 * 270.00449 * 3 2 1 5 5 H 1.48504 * 109.47092 * 30.00469 * 3 2 1 6 6 H 1.48509 * 109.47266 * 150.00512 * 3 2 1 7 7 C 1.38820 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99603 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99819 * 359.97438 * 7 2 1 10 10 C 1.46498 * 119.99906 * 180.02562 * 9 7 2 11 11 C 1.53781 * 113.61877 * 154.99491 * 10 9 7 12 12 C 1.53782 * 87.08027 * 89.11599 * 11 10 9 13 13 C 1.52995 * 113.61802 * 139.98542 * 12 11 10 14 14 N 1.46497 * 109.47508 * 176.52798 * 13 12 11 15 15 C 1.34777 * 120.00298 * 179.97438 * 14 13 12 16 16 O 1.21554 * 119.99801 * 359.97438 * 15 14 13 17 17 C 1.47837 * 120.00374 * 180.02562 * 15 14 13 18 18 C 1.40029 * 120.55645 * 354.31399 * 17 15 14 19 19 C 1.38352 * 118.28797 * 179.97438 * 18 17 15 20 20 C 1.38353 * 119.30331 * 0.27761 * 19 18 17 21 21 N 1.31931 * 121.07996 * 359.44369 * 20 19 18 22 22 C 1.31692 * 121.87625 * 0.54555 * 21 20 19 23 23 C 1.50701 * 119.71850 * 179.72470 * 22 21 20 24 24 C 1.53000 * 117.49493 * 358.71385 * 23 22 21 25 25 C 1.52997 * 117.49837 * 290.09383 * 23 22 21 26 26 C 1.53776 * 87.17371 * 25.39118 * 12 11 10 27 27 H 0.97001 * 119.99857 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00362 * 359.97438 * 9 7 2 29 29 H 1.09005 * 112.85198 * 23.79818 * 10 9 7 30 30 H 1.09005 * 113.61048 * 334.57126 * 11 10 9 31 31 H 1.08997 * 113.61837 * 203.66370 * 11 10 9 32 32 H 1.09003 * 113.61571 * 270.80337 * 12 11 10 33 33 H 1.09004 * 109.47032 * 56.52609 * 13 12 11 34 34 H 1.09001 * 109.46868 * 296.52944 * 13 12 11 35 35 H 0.96997 * 119.99700 * 359.97438 * 14 13 12 36 36 H 1.08001 * 120.85563 * 359.95265 * 18 17 15 37 37 H 1.07997 * 120.35108 * 180.02562 * 19 18 17 38 38 H 1.08003 * 119.46247 * 179.70004 * 20 19 18 39 39 H 1.09000 * 115.55491 * 144.42002 * 23 22 21 40 40 H 1.09003 * 117.50039 * 0.02562 * 24 23 22 41 41 H 1.09002 * 117.49994 * 145.02111 * 24 23 22 42 42 H 1.09000 * 117.50314 * 214.97431 * 25 23 22 43 43 H 1.08996 * 117.50269 * 359.97438 * 25 23 22 44 44 H 1.09004 * 113.61167 * 89.15450 * 26 12 11 45 45 H 1.09002 * 113.61920 * 220.06421 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.2602 -4.8288 0.5950 12 6 0.7204 -5.0792 -0.8230 13 6 0.6194 -6.5616 -1.1876 14 7 0.0208 -6.6978 -2.5177 15 6 -0.1672 -7.9216 -3.0501 16 8 0.1605 -8.9124 -2.4267 17 6 -0.7708 -8.0590 -4.3926 18 6 -1.2598 -6.9362 -5.0716 19 6 -1.8148 -7.1187 -6.3257 20 6 -1.8736 -8.3930 -6.8614 21 7 -1.3999 -9.4320 -6.2006 22 6 -0.8623 -9.3094 -5.0047 23 6 -0.3419 -10.5304 -4.2908 24 6 -0.4957 -11.8798 -4.9954 25 6 -1.3696 -11.5447 -3.7851 26 6 1.9976 -4.4016 -1.3466 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3881 0.0002 29 1 3.0656 -3.5639 0.4048 30 1 0.4938 -4.5189 1.3056 31 1 1.8870 -5.6367 0.9725 32 1 -0.1912 -4.5251 -1.0473 33 1 -0.0034 -7.0744 -0.4546 34 1 1.6158 -7.0036 -1.1906 35 1 -0.2404 -5.9071 -3.0152 36 1 -1.2055 -5.9532 -4.6275 37 1 -2.2017 -6.2758 -6.8791 38 1 -2.3107 -8.5390 -7.8381 39 1 0.5526 -10.3766 -3.6872 40 1 -0.9729 -11.8843 -5.9754 41 1 0.2977 -12.6140 -4.8555 42 1 -1.1512 -12.0585 -2.8489 43 1 -2.4221 -11.3288 -3.9683 44 1 2.8265 -5.0924 -1.5009 45 1 1.8259 -3.7472 -2.2013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091120113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:18 Heat of formation + Delta-G solvation = 39.624050 kcal Electronic energy + Delta-G solvation = -25192.383073 eV Core-core repulsion = 21596.785811 eV Total energy + Delta-G solvation = -3595.597263 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.88721 -40.47648 -39.60344 -37.83921 -36.02721 -35.03463 -33.62863 -32.25965 -31.94470 -28.83324 -26.43833 -25.98487 -25.46551 -25.18911 -23.26757 -23.06725 -21.97141 -21.60289 -19.93260 -19.36699 -18.69252 -18.00467 -17.48091 -16.76289 -16.62948 -16.36095 -16.23157 -15.81357 -15.77201 -15.33466 -15.19977 -14.88397 -14.64065 -14.48840 -14.05804 -13.70583 -13.54740 -13.29377 -12.94184 -12.92663 -12.85341 -12.63148 -12.38213 -12.16885 -12.07225 -11.76195 -11.55901 -11.48559 -11.40189 -10.98248 -10.95541 -10.93758 -10.81710 -10.35815 -10.15737 -9.81558 -8.99779 -7.95618 -5.23552 -0.39280 0.14469 1.48374 1.49025 1.57608 1.81024 2.07901 2.55705 2.64604 3.06925 3.17879 3.37083 3.52740 3.65395 3.73033 3.77933 3.82955 3.88137 4.02067 4.11351 4.15659 4.20426 4.23790 4.32762 4.40238 4.46301 4.66641 4.73273 4.76179 4.77844 4.93468 4.96630 4.99595 5.01564 5.03826 5.10997 5.19531 5.27913 5.33357 5.37084 5.48476 5.54662 5.60033 5.66210 6.28288 6.44530 6.87487 7.12484 7.33483 8.10654 8.32975 9.27615 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.021467 B = 0.002414 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.026911 B =11595.175289 C =12552.494976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.075 4.075 3 Si 0.971 3.029 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.719 5.719 10 C 0.143 3.857 11 C -0.134 4.134 12 C -0.103 4.103 13 C 0.142 3.858 14 N -0.712 5.712 15 C 0.558 3.442 16 O -0.558 6.558 17 C -0.203 4.203 18 C -0.042 4.042 19 C -0.177 4.177 20 C 0.123 3.877 21 N -0.506 5.506 22 C 0.200 3.800 23 C -0.130 4.130 24 C -0.154 4.154 25 C -0.152 4.152 26 C -0.153 4.153 27 H 0.251 0.749 28 H 0.375 0.625 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.409 0.591 36 H 0.159 0.841 37 H 0.176 0.824 38 H 0.194 0.806 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.513 -19.793 -12.995 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.800 3.200 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.373 4.373 8 H 0.094 0.906 9 N -0.358 5.358 10 C 0.033 3.967 11 C -0.173 4.173 12 C -0.121 4.121 13 C 0.018 3.982 14 N -0.364 5.364 15 C 0.346 3.654 16 O -0.438 6.438 17 C -0.208 4.208 18 C -0.068 4.068 19 C -0.197 4.197 20 C -0.034 4.034 21 N -0.215 5.215 22 C 0.062 3.938 23 C -0.149 4.149 24 C -0.191 4.191 25 C -0.190 4.190 26 C -0.194 4.194 27 H 0.060 0.940 28 H 0.207 0.793 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.245 0.755 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.211 0.789 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.109 0.891 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.159 -21.150 -12.884 24.966 hybrid contribution -0.171 2.478 0.325 2.505 sum -3.330 -18.672 -12.559 22.748 Atomic orbital electron populations 1.69801 1.06515 1.26054 1.59537 1.25528 0.96375 1.00978 1.03807 0.85174 0.77724 0.79661 0.77406 1.21416 1.22345 1.19542 1.19661 0.91502 0.85198 1.40977 0.90626 1.42295 1.05328 1.00529 1.87604 1.21421 0.95051 0.84922 0.95260 1.23342 0.99968 0.98651 0.95373 1.22499 0.98383 0.93624 0.97641 1.21335 0.98342 0.95645 0.82828 1.45900 1.62918 1.07912 1.19639 1.18247 0.78205 0.83331 0.85626 1.90704 1.52598 1.37722 1.62819 1.20721 1.07468 0.95958 0.96691 1.22130 0.91834 0.98336 0.94505 1.22506 1.01014 1.00185 0.95944 1.23636 0.91966 0.87860 0.99905 1.67524 1.11319 1.35284 1.07383 1.20610 0.90902 0.92544 0.89758 1.21197 1.02782 0.87503 1.03417 1.23021 1.02641 0.96217 0.97203 1.22852 0.95889 1.01034 0.99187 1.23739 0.97300 0.99205 0.99148 0.94019 0.79320 0.92282 0.92345 0.87622 0.89931 0.91607 0.91137 0.75461 0.82377 0.80614 0.78913 0.85755 0.87773 0.87364 0.87807 0.89516 0.89124 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 2 C -0.07 -4.18 5.50 84.87 0.47 -3.71 16 3 Si 0.97 45.10 29.55 68.60 2.03 47.13 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.03 9.97 84.04 0.84 -12.20 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 N -0.72 -34.72 5.31 -320.16 -1.70 -36.42 16 10 C 0.14 5.30 4.57 45.58 0.21 5.51 16 11 C -0.13 -3.94 7.39 31.12 0.23 -3.71 16 12 C -0.10 -2.78 3.62 -10.27 -0.04 -2.82 16 13 C 0.14 3.40 5.50 86.38 0.47 3.87 16 14 N -0.71 -16.10 5.51 -465.99 -2.57 -18.67 16 15 C 0.56 14.43 7.74 86.78 0.67 15.10 16 16 O -0.56 -17.37 13.41 -3.89 -0.05 -17.42 16 17 C -0.20 -4.61 5.89 -19.99 -0.12 -4.72 16 18 C -0.04 -0.69 9.64 22.73 0.22 -0.47 16 19 C -0.18 -2.20 10.10 22.32 0.23 -1.98 16 20 C 0.12 1.77 11.17 84.71 0.95 2.71 16 21 N -0.51 -10.61 9.28 -182.84 -1.70 -12.30 16 22 C 0.20 4.76 6.50 42.89 0.28 5.04 16 23 C -0.13 -3.12 4.63 -11.54 -0.05 -3.18 16 24 C -0.15 -2.95 10.02 30.59 0.31 -2.64 16 25 C -0.15 -3.16 10.23 30.59 0.31 -2.85 16 26 C -0.15 -4.67 7.44 31.18 0.23 -4.44 16 27 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.37 19.33 7.90 -92.71 -0.73 18.60 16 29 H 0.06 2.21 8.10 -2.38 -0.02 2.19 16 30 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 31 H 0.11 2.54 8.10 -2.39 -0.02 2.52 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.07 1.71 7.87 -2.39 -0.02 1.69 16 35 H 0.41 7.75 6.61 -92.71 -0.61 7.14 16 36 H 0.16 1.92 6.56 -2.91 -0.02 1.90 16 37 H 0.18 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.19 1.33 8.06 -2.91 -0.02 1.31 16 39 H 0.12 3.42 6.09 -2.39 -0.01 3.40 16 40 H 0.10 2.00 7.54 -2.39 -0.02 1.98 16 41 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.09 2.38 7.92 -2.38 -0.02 2.36 16 45 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -68.78 373.29 1.17 -67.62 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.33 Total: 37.95 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 5.20 Total: -10.47 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -5.68 Total: -124.80 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.78 1.17 -67.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091120113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.239 kcal (2) G-P(sol) polarization free energy of solvation -68.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds