Wall clock time and date at job start Tue Mar 31 2020 11:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.54449 * 112.30273 * 2 1 4 4 N 1.48335 * 104.32413 * 97.55294 * 3 2 1 5 5 C 1.36938 * 128.19718 * 221.80639 * 4 3 2 6 6 H 1.08001 * 119.99998 * 152.70401 * 5 4 3 7 7 C 1.38814 * 120.00085 * 332.70822 * 5 4 3 8 8 N 1.31621 * 119.99908 * 335.86488 * 7 5 4 9 9 Si 1.86799 * 119.99759 * 155.59192 * 7 5 4 10 10 H 1.48496 * 109.47438 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46893 * 120.00124 * 9 7 5 12 12 H 1.48502 * 109.47202 * 239.99653 * 9 7 5 13 13 C 1.48329 * 103.60450 * 42.06917 * 4 3 2 14 14 C 1.54874 * 104.11511 * 317.89721 * 13 4 3 15 15 H 1.09005 * 112.91664 * 262.97623 * 14 13 4 16 16 C 1.53742 * 108.86489 * 137.55917 * 14 13 4 17 17 N 1.47189 * 106.43375 * 229.57184 * 16 14 13 18 18 C 1.34777 * 126.70328 * 211.40464 * 17 16 14 19 19 O 1.21783 * 120.00010 * 179.97438 * 18 17 16 20 20 C 1.41516 * 120.00305 * 359.95740 * 18 17 16 21 21 C 1.35613 * 120.00226 * 184.70772 * 20 18 17 22 22 C 1.41672 * 119.99869 * 6.91874 * 21 20 18 23 23 C 1.38285 * 126.25669 * 220.32312 * 22 21 20 24 24 C 1.39780 * 107.07965 * 179.97438 * 23 22 21 25 25 C 1.35506 * 107.90691 * 0.02562 * 24 23 22 26 26 N 1.35751 * 108.90971 * 359.76623 * 25 24 23 27 27 H 0.97004 * 125.69082 * 180.22992 * 26 25 24 28 28 C 1.47188 * 106.59561 * 31.36972 * 17 16 14 29 29 H 1.09005 * 109.47078 * 61.01154 * 1 2 3 30 30 H 1.08998 * 109.47489 * 181.01711 * 1 2 3 31 31 H 1.09010 * 109.47124 * 301.01765 * 1 2 3 32 32 H 1.08998 * 110.46260 * 338.84260 * 3 2 1 33 33 H 1.09001 * 110.57112 * 216.31952 * 3 2 1 34 34 H 0.96998 * 120.00130 * 353.59861 * 8 7 5 35 35 H 1.08999 * 110.46595 * 76.64212 * 13 4 3 36 36 H 1.09001 * 110.46460 * 199.22699 * 13 4 3 37 37 H 1.09002 * 110.06538 * 110.32638 * 16 14 13 38 38 H 1.09000 * 110.10890 * 348.84244 * 16 14 13 39 39 H 1.08007 * 119.99777 * 4.70785 * 20 18 17 40 40 H 1.08005 * 119.99981 * 186.91227 * 21 20 18 41 41 H 1.08008 * 126.45811 * 359.97438 * 23 22 21 42 42 H 1.07997 * 126.04828 * 179.97438 * 24 23 22 43 43 H 1.08003 * 125.54402 * 179.97438 * 25 24 23 44 44 H 1.08993 * 110.06943 * 209.39282 * 28 17 16 45 45 H 1.09002 * 110.06956 * 87.86953 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1161 1.4289 0.0000 4 7 2.4302 1.6968 1.4248 5 6 2.2223 2.8486 2.1357 6 1 2.0737 2.8041 3.2045 7 6 2.2024 4.0733 1.4825 8 7 2.8262 4.2160 0.3324 9 14 1.2840 5.5168 2.2323 10 1 0.6668 5.0978 3.5163 11 1 2.2326 6.6321 2.4803 12 1 0.2229 5.9683 1.2966 13 6 3.0286 0.4238 1.8954 14 6 2.1337 -0.6707 1.2633 15 1 1.3670 -1.0384 1.9454 16 6 3.0307 -1.8002 0.7311 17 7 2.5948 -2.0625 -0.6501 18 6 2.6293 -3.2456 -1.2948 19 8 2.2348 -3.3244 -2.4442 20 6 3.1244 -4.3962 -0.6362 21 6 3.2486 -5.5645 -1.3135 22 6 3.0236 -5.5999 -2.7118 23 6 2.3635 -6.5952 -3.4089 24 6 2.3715 -6.2266 -4.7572 25 6 3.0206 -5.0417 -4.8613 26 7 3.4178 -4.6475 -3.6245 27 1 3.9005 -3.8317 -3.4184 28 6 2.1130 -0.7805 -1.1894 29 1 -0.3633 0.4981 -0.8990 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3634 0.5296 0.8808 32 1 1.3796 2.1429 -0.3686 33 1 3.0222 1.4713 -0.6044 34 1 3.3762 3.4958 -0.0137 35 1 4.0553 0.3314 1.5411 36 1 2.9933 0.3653 2.9833 37 1 2.9048 -2.6959 1.3394 38 1 4.0744 -1.4859 0.7406 39 1 3.4034 -4.3438 0.4059 40 1 3.5192 -6.4678 -0.7870 41 1 1.9245 -7.4890 -2.9904 42 1 1.9380 -6.7874 -5.5719 43 1 3.1910 -4.4976 -5.7786 44 1 1.3392 -0.9563 -1.9366 45 1 2.9408 -0.2257 -1.6310 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091623765.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:25 Heat of formation + Delta-G solvation = 84.490546 kcal Electronic energy + Delta-G solvation = -26630.636961 eV Core-core repulsion = 23036.985256 eV Total energy + Delta-G solvation = -3593.651705 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28743 -40.25601 -38.53884 -35.23943 -33.85087 -32.76170 -31.46461 -30.84710 -29.59890 -28.55640 -26.66724 -25.75469 -25.22544 -23.40802 -22.17970 -20.69917 -20.51914 -20.31202 -19.10408 -18.65175 -17.68896 -17.21613 -16.73581 -15.66952 -15.05014 -14.79562 -14.50650 -14.17469 -13.96883 -13.84381 -13.61716 -13.56675 -13.33247 -13.21280 -12.88745 -12.58882 -12.44825 -12.23279 -12.06378 -11.90098 -11.71940 -11.24068 -11.08089 -10.74634 -10.55536 -10.29088 -10.22648 -10.12969 -10.04263 -9.98808 -9.81662 -9.47630 -8.80819 -8.52134 -8.45470 -7.64794 -7.02597 -6.18471 -3.31970 0.63546 2.58317 2.99318 3.13213 3.37633 3.45979 3.49029 3.52746 3.62018 4.49331 4.55020 4.73960 4.84949 4.92468 5.09151 5.20264 5.26834 5.31001 5.35578 5.41033 5.47377 5.49204 5.52427 5.61841 5.77983 5.83375 5.85786 5.88715 5.96717 6.07663 6.14324 6.19677 6.26279 6.31058 6.37977 6.49989 6.51018 6.57799 6.76577 6.82805 6.94688 6.97970 7.16405 7.62770 7.65973 7.73244 8.20205 8.39128 8.88826 9.69852 10.36591 11.14385 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.032233 B = 0.002867 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.453816 B = 9762.585082 C =10099.734442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.088 4.088 3 C 0.149 3.851 4 N -0.594 5.594 5 C -0.330 4.330 6 H 0.062 0.938 7 C -0.023 4.023 8 N -0.914 5.914 9 Si 1.073 2.927 10 H -0.291 1.291 11 H -0.293 1.293 12 H -0.289 1.289 13 C 0.129 3.871 14 C -0.107 4.107 15 H 0.086 0.914 16 C 0.105 3.895 17 N -0.607 5.607 18 C 0.554 3.446 19 O -0.551 6.551 20 C -0.238 4.238 21 C 0.020 3.980 22 C 0.015 3.985 23 C -0.161 4.161 24 C -0.218 4.218 25 C 0.013 3.987 26 N -0.495 5.495 27 H 0.415 0.585 28 C 0.116 3.884 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.027 0.973 34 H 0.268 0.732 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.143 0.857 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.159 0.841 44 H 0.075 0.925 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.303 -19.442 -3.773 19.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.090 4.090 3 C 0.023 3.977 4 N -0.318 5.318 5 C -0.458 4.458 6 H 0.079 0.921 7 C -0.225 4.225 8 N -0.553 5.553 9 Si 0.902 3.098 10 H -0.217 1.217 11 H -0.220 1.220 12 H -0.216 1.216 13 C 0.003 3.997 14 C -0.128 4.128 15 H 0.104 0.896 16 C -0.018 4.018 17 N -0.338 5.338 18 C 0.347 3.653 19 O -0.433 6.433 20 C -0.260 4.260 21 C -0.001 4.001 22 C -0.098 4.098 23 C -0.187 4.187 24 C -0.243 4.243 25 C -0.125 4.125 26 N -0.087 5.087 27 H 0.255 0.745 28 C -0.007 4.007 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.149 0.851 40 H 0.160 0.840 41 H 0.152 0.848 42 H 0.150 0.850 43 H 0.176 0.824 44 H 0.094 0.906 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.710 -17.656 -4.509 18.236 hybrid contribution 0.683 -1.135 0.521 1.423 sum 1.393 -18.791 -3.988 19.259 Atomic orbital electron populations 1.21562 0.93285 1.00484 1.02282 1.22369 0.95917 0.97843 0.92890 1.21824 0.96835 0.91213 0.87839 1.45126 1.68947 1.10173 1.07586 1.19722 1.49356 0.83769 0.92961 0.92070 1.25952 0.99661 0.98640 0.98278 1.70708 1.27722 1.34928 1.21914 0.83423 0.76215 0.75241 0.74908 1.21712 1.21997 1.21558 1.21961 0.93414 0.86930 0.97427 1.23134 0.97728 0.94846 0.97069 0.89557 1.22316 0.98771 0.98703 0.82005 1.48653 1.61919 1.08364 1.14874 1.16906 0.79673 0.82508 0.86193 1.90898 1.50217 1.84837 1.17324 1.22107 1.08025 0.94126 1.01729 1.20812 0.90845 0.97415 0.91027 1.17968 1.09550 0.92229 0.90047 1.21244 1.04668 0.99244 0.93495 1.20668 1.08273 0.98543 0.96789 1.21906 1.03634 0.98325 0.88606 1.42276 1.42417 1.18015 1.06021 0.74511 1.22197 0.98902 0.82942 0.96670 0.92789 0.93640 0.91685 0.91876 0.95535 0.92110 0.95686 0.93055 0.90965 0.91024 0.85070 0.83989 0.84799 0.85038 0.82386 0.90633 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 8.61 37.16 0.32 -1.65 16 2 C -0.09 -1.52 1.08 -152.17 -0.16 -1.68 16 3 C 0.15 3.27 4.46 -2.27 -0.01 3.26 16 4 N -0.59 -14.33 3.13 -168.21 -0.53 -14.86 16 5 C -0.33 -9.00 10.18 -15.06 -0.15 -9.15 16 6 H 0.06 1.67 7.94 -52.49 -0.42 1.26 16 7 C -0.02 -0.63 5.14 -17.43 -0.09 -0.72 16 8 N -0.91 -27.02 13.00 55.49 0.72 -26.29 16 9 Si 1.07 24.89 29.98 -169.99 -5.10 19.79 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.13 2.50 6.77 -2.05 -0.01 2.48 16 14 C -0.11 -1.71 3.77 -88.05 -0.33 -2.04 16 15 H 0.09 1.34 7.95 -51.93 -0.41 0.92 16 16 C 0.11 1.38 6.28 -3.28 -0.02 1.36 16 17 N -0.61 -8.76 3.32 -175.10 -0.58 -9.34 16 18 C 0.55 7.92 7.21 -15.01 -0.11 7.81 16 19 O -0.55 -9.17 11.72 5.11 0.06 -9.11 16 20 C -0.24 -2.63 9.40 -39.27 -0.37 -3.00 16 21 C 0.02 0.20 9.96 -39.21 -0.39 -0.19 16 22 C 0.01 0.18 5.35 -83.91 -0.45 -0.27 16 23 C -0.16 -1.92 10.86 -38.99 -0.42 -2.35 16 24 C -0.22 -2.56 10.81 -39.98 -0.43 -2.99 16 25 C 0.01 0.15 11.90 -16.79 -0.20 -0.05 16 26 N -0.50 -6.21 3.88 -10.56 -0.04 -6.26 16 27 H 0.42 5.13 7.38 -40.82 -0.30 4.83 16 28 C 0.12 1.86 6.21 -3.28 -0.02 1.84 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 32 H 0.06 1.55 7.55 -51.93 -0.39 1.15 16 33 H 0.03 0.61 6.79 -51.93 -0.35 0.25 16 34 H 0.27 7.97 6.76 -40.82 -0.28 7.69 16 35 H 0.03 0.49 7.18 -51.93 -0.37 0.11 16 36 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.77 6.77 -51.93 -0.35 0.42 16 38 H 0.07 0.93 7.10 -51.93 -0.37 0.56 16 39 H 0.13 1.15 6.61 -52.48 -0.35 0.80 16 40 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 42 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 43 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 44 H 0.08 1.26 7.61 -51.93 -0.40 0.86 16 45 H 0.07 1.13 7.11 -51.93 -0.37 0.76 16 LS Contribution 355.87 15.07 5.36 5.36 Total: -1.00 -32.29 355.87 -9.49 -41.78 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.53 Total: 6.27 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -2.86 Total: -7.34 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.43 Total: -56.75 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.06 Total: -9.11 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.10 Total: 19.79 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.29 -9.49 -41.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091623765.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.271 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds