Wall clock time and date at job start Tue Mar 31 2020 11:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86799 * 120.00511 * 2 1 4 4 H 1.48500 * 109.47252 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47017 * 300.00279 * 3 2 1 6 6 H 1.48499 * 109.46657 * 59.99843 * 3 2 1 7 7 C 1.38820 * 119.99615 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00076 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.46501 * 119.99982 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.17661 * 50.77377 * 10 9 7 12 12 C 1.53037 * 109.32573 * 291.22353 * 10 9 7 13 13 C 1.53971 * 108.82593 * 295.14251 * 12 10 9 14 14 H 1.09006 * 112.99199 * 168.09144 * 13 12 10 15 15 C 1.55425 * 107.19894 * 293.47887 * 13 12 10 16 16 C 1.55454 * 100.23465 * 73.48243 * 15 13 12 17 17 H 1.09004 * 113.04618 * 163.20270 * 16 15 13 18 18 C 1.52980 * 109.32903 * 170.33309 * 10 9 7 19 19 N 1.47794 * 104.11531 * 40.86538 * 16 15 13 20 20 C 1.34768 * 125.85774 * 153.44296 * 19 16 15 21 21 O 1.21785 * 119.99913 * 359.71876 * 20 19 16 22 22 C 1.41522 * 120.00160 * 179.71446 * 20 19 16 23 23 C 1.35617 * 119.99856 * 180.02562 * 22 20 19 24 24 C 1.41673 * 119.99750 * 180.02562 * 23 22 20 25 25 C 1.38286 * 126.25767 * 180.02562 * 24 23 22 26 26 C 1.39787 * 107.07577 * 179.97438 * 25 24 23 27 27 C 1.35498 * 107.91076 * 359.97438 * 26 25 24 28 28 N 1.35746 * 108.91293 * 0.26471 * 27 26 25 29 29 H 0.97006 * 125.69313 * 179.73379 * 28 27 26 30 30 C 1.47083 * 108.28773 * 333.17894 * 19 16 15 31 31 H 0.97002 * 119.99732 * 0.02562 * 1 2 3 32 32 H 0.97000 * 120.00458 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.57936 * 175.33562 * 12 10 9 34 34 H 1.09003 * 109.57547 * 54.94162 * 12 10 9 35 35 H 1.09002 * 111.23304 * 191.43991 * 15 13 12 36 36 H 1.08998 * 111.23945 * 315.88861 * 15 13 12 37 37 H 1.09001 * 109.53276 * 185.06201 * 18 10 9 38 38 H 1.09002 * 109.53345 * 305.21216 * 18 10 9 39 39 H 1.07995 * 119.99940 * 0.02562 * 22 20 19 40 40 H 1.07995 * 120.00204 * 0.02562 * 23 22 20 41 41 H 1.08000 * 126.46057 * 359.97438 * 25 24 23 42 42 H 1.08003 * 126.04227 * 179.97438 * 26 25 24 43 43 H 1.08001 * 125.53951 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.97877 * 120.72196 * 30 19 16 45 45 H 1.08996 * 109.97930 * 242.00856 * 30 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8915 2.3964 -1.2124 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0001 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6569 -0.0005 11 1 2.8006 -3.6415 0.7970 12 6 2.7637 -3.8342 -1.3467 13 6 1.7000 -3.9634 -2.4524 14 1 2.1177 -3.8858 -3.4562 15 6 0.9414 -5.2975 -2.2066 16 6 0.0887 -4.9061 -0.9671 17 1 -0.7398 -5.5908 -0.7857 18 6 1.0784 -4.8068 0.2419 19 7 -0.3689 -3.5324 -1.2637 20 6 -1.4884 -2.9531 -0.7870 21 8 -2.2272 -3.5749 -0.0449 22 6 -1.8055 -1.6221 -1.1486 23 6 -2.9318 -1.0390 -0.6684 24 6 -3.2495 0.2932 -1.0308 25 6 -4.3577 1.0107 -0.6191 26 6 -4.2725 2.2737 -1.2122 27 6 -3.1418 2.3084 -1.9581 28 7 -2.5136 1.1090 -1.8609 29 1 -1.6836 0.8675 -2.3011 30 6 0.6104 -2.9038 -2.1632 31 1 -0.4850 0.8401 -0.0004 32 1 0.3554 -2.3881 0.0002 33 1 3.3763 -4.7354 -1.3220 34 1 3.3938 -2.9672 -1.5456 35 1 0.3118 -5.5562 -3.0580 36 1 1.6321 -6.1064 -1.9688 37 1 1.6302 -5.7425 0.3321 38 1 0.5204 -4.6229 1.1599 39 1 -1.1505 -1.0708 -1.8068 40 1 -3.5866 -1.5902 -0.0098 41 1 -5.1412 0.6612 0.0369 42 1 -4.9824 3.0793 -1.0963 43 1 -2.7989 3.1515 -2.5394 44 1 0.1249 -2.6058 -3.0924 45 1 1.0557 -2.0343 -1.6798 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094905984.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:00 Heat of formation + Delta-G solvation = 85.985991 kcal Electronic energy + Delta-G solvation = -28323.977640 eV Core-core repulsion = 24730.390781 eV Total energy + Delta-G solvation = -3593.586858 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35268 -41.74358 -39.48505 -35.95152 -34.66916 -34.08155 -32.71227 -31.93183 -31.76153 -29.63609 -28.78179 -26.58371 -25.40064 -24.83445 -22.61440 -22.44749 -21.26749 -20.96628 -20.23213 -19.64082 -19.04627 -18.35156 -17.64682 -16.78189 -16.56496 -16.16290 -15.78144 -15.39337 -14.94667 -14.89769 -14.63641 -14.52447 -14.38149 -14.06091 -13.78647 -13.41429 -13.24378 -13.18299 -13.12816 -12.93864 -12.91251 -12.88144 -12.62950 -12.52503 -12.32504 -11.99812 -11.79550 -11.46219 -11.26015 -10.97508 -10.92367 -10.75032 -10.42424 -9.73303 -9.29958 -8.45309 -8.36576 -7.66337 -5.04670 0.01803 1.45136 1.53029 1.56620 1.76404 2.18074 2.33826 2.55258 2.60611 2.88078 3.48686 3.64785 3.74698 3.88851 4.17374 4.19704 4.22002 4.29934 4.40824 4.46107 4.50485 4.50718 4.59691 4.70594 4.73665 4.75486 4.82542 4.97017 4.98329 5.08926 5.12912 5.23002 5.28207 5.31475 5.42092 5.44045 5.47935 5.56031 5.61043 5.67234 5.81456 5.98354 6.19022 6.29506 6.40650 6.75693 6.78391 7.37138 7.49893 8.22363 8.53565 9.39087 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012871 B = 0.006316 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.919246 B = 4432.121926 C = 5884.871683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.050 4.050 3 Si 0.949 3.051 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.314 1.314 7 C -0.243 4.243 8 H 0.065 0.935 9 N -0.736 5.736 10 C 0.161 3.839 11 H 0.022 0.978 12 C -0.117 4.117 13 C -0.084 4.084 14 H 0.113 0.887 15 C -0.109 4.109 16 C 0.120 3.880 17 H 0.086 0.914 18 C -0.126 4.126 19 N -0.592 5.592 20 C 0.561 3.439 21 O -0.612 6.612 22 C -0.157 4.157 23 C -0.016 4.016 24 C 0.025 3.975 25 C -0.183 4.183 26 C -0.217 4.217 27 C -0.001 4.001 28 N -0.533 5.533 29 H 0.417 0.583 30 C 0.060 3.940 31 H 0.250 0.750 32 H 0.388 0.612 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.105 0.895 38 H 0.028 0.972 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.144 0.856 42 H 0.157 0.843 43 H 0.192 0.808 44 H 0.032 0.968 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.081 -4.098 -8.929 9.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.245 4.245 3 Si 0.781 3.219 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.242 1.242 7 C -0.375 4.375 8 H 0.083 0.917 9 N -0.386 5.386 10 C 0.053 3.947 11 H 0.039 0.961 12 C -0.157 4.157 13 C -0.103 4.103 14 H 0.131 0.869 15 C -0.147 4.147 16 C 0.016 3.984 17 H 0.104 0.896 18 C -0.165 4.165 19 N -0.323 5.323 20 C 0.357 3.643 21 O -0.499 6.499 22 C -0.179 4.179 23 C -0.037 4.037 24 C -0.087 4.087 25 C -0.208 4.208 26 C -0.241 4.241 27 C -0.136 4.136 28 N -0.126 5.126 29 H 0.255 0.745 30 C -0.062 4.062 31 H 0.060 0.940 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.047 0.953 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.162 0.838 42 H 0.175 0.825 43 H 0.209 0.791 44 H 0.051 0.949 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.223 -4.307 -8.591 9.612 hybrid contribution 0.521 1.209 0.613 1.452 sum 0.298 -3.098 -7.978 8.564 Atomic orbital electron populations 1.69808 1.04592 1.24908 1.57762 1.25187 0.96310 0.98889 1.04098 0.85467 0.78200 0.82182 0.76038 1.20562 1.21670 1.24244 1.19404 0.91133 0.85253 1.41698 0.91677 1.43877 1.07228 1.00478 1.87030 1.20449 0.92825 0.85708 0.95742 0.96059 1.22125 0.97085 1.01442 0.95024 1.22493 0.94614 0.93603 0.99557 0.86898 1.23027 0.98279 0.97662 0.95728 1.22985 0.95571 0.83447 0.96353 0.89609 1.22673 0.97335 0.99711 0.96774 1.48600 1.21666 1.14845 1.47208 1.17030 0.79844 0.87725 0.79688 1.90699 1.52014 1.67219 1.39941 1.21407 0.97273 0.93821 1.05424 1.20420 0.96293 0.91295 0.95704 1.18188 0.95771 0.92681 1.02062 1.21626 0.98719 0.95602 1.04889 1.21034 1.00411 0.98520 1.04101 1.22491 0.96031 0.89583 1.05523 1.42248 1.21248 1.11853 1.37260 0.74496 1.23333 0.89429 1.02187 0.91221 0.94003 0.76972 0.89795 0.92947 0.90171 0.87181 0.87684 0.95350 0.86098 0.86052 0.83772 0.82515 0.79097 0.94923 0.84347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.34 9.76 21.65 0.21 -47.13 16 2 C -0.05 -2.52 5.39 84.87 0.46 -2.06 16 3 Si 0.95 42.71 29.55 68.60 2.03 44.74 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.31 -15.10 7.11 99.48 0.71 -14.40 16 7 C -0.24 -12.10 7.95 84.04 0.67 -11.43 16 8 H 0.07 3.23 7.75 -2.91 -0.02 3.20 16 9 N -0.74 -33.95 2.79 -322.90 -0.90 -34.85 16 10 C 0.16 6.02 3.12 45.00 0.14 6.16 16 11 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 12 C -0.12 -3.46 5.21 30.93 0.16 -3.30 16 13 C -0.08 -2.28 4.27 -9.05 -0.04 -2.32 16 14 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 15 C -0.11 -2.57 6.22 32.27 0.20 -2.37 16 16 C 0.12 3.92 4.12 46.83 0.19 4.12 16 17 H 0.09 2.89 8.01 -2.38 -0.02 2.87 16 18 C -0.13 -4.25 5.50 31.83 0.18 -4.08 16 19 N -0.59 -23.21 1.74 -789.11 -1.37 -24.58 16 20 C 0.56 25.61 5.99 85.05 0.51 26.12 16 21 O -0.61 -31.16 16.36 -4.62 -0.08 -31.24 16 22 C -0.16 -6.79 6.20 22.47 0.14 -6.65 16 23 C -0.02 -0.65 9.39 22.51 0.21 -0.43 16 24 C 0.02 0.91 6.74 39.08 0.26 1.18 16 25 C -0.18 -6.08 10.86 22.66 0.25 -5.83 16 26 C -0.22 -6.17 10.81 22.01 0.24 -5.93 16 27 C 0.00 -0.03 11.90 83.45 0.99 0.96 16 28 N -0.53 -17.69 5.94 -187.33 -1.11 -18.80 16 29 H 0.42 13.84 7.87 -92.70 -0.73 13.11 16 30 C 0.06 2.18 4.51 86.85 0.39 2.57 16 31 H 0.25 12.85 8.31 -92.71 -0.77 12.08 16 32 H 0.39 19.04 3.01 -92.71 -0.28 18.76 16 33 H 0.08 1.92 8.01 -2.39 -0.02 1.90 16 34 H 0.05 1.72 7.67 -2.39 -0.02 1.70 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.11 1.95 7.83 -2.39 -0.02 1.93 16 37 H 0.10 2.67 8.04 -2.39 -0.02 2.65 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.12 5.24 5.47 -2.91 -0.02 5.22 16 40 H 0.12 5.16 7.46 -2.91 -0.02 5.14 16 41 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 42 H 0.16 3.52 8.06 -2.91 -0.02 3.49 16 43 H 0.19 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.14 6.04 3.78 -21.32 -0.08 5.96 16 Total: -1.00 -63.54 343.72 3.67 -59.87 By element: Atomic # 1 Polarization: 55.36 SS G_CDS: -0.06 Total: 55.30 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 4.95 Total: -3.30 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -3.17 Total: -125.37 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -0.08 Total: -31.24 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.54 3.67 -59.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094905984.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.857 kcal (2) G-P(sol) polarization free energy of solvation -63.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds