Wall clock time and date at job start Tue Mar 31 2020 11:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48508 * 109.47071 * 270.00459 * 3 2 1 5 5 H 1.48495 * 109.47075 * 29.99978 * 3 2 1 6 6 H 1.48498 * 109.47523 * 150.00131 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.83587 * 0.02716 * 9 7 2 11 11 H 1.08997 * 115.85750 * 0.33431 * 10 9 7 12 12 C 1.55847 * 101.05077 * 233.94644 * 10 9 7 13 13 C 1.55877 * 103.52933 * 327.67019 * 12 10 9 14 14 C 1.50240 * 130.84094 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85732 * 359.66289 * 14 9 7 16 16 C 1.55848 * 101.05163 * 233.98621 * 14 9 7 17 17 H 1.09000 * 110.62759 * 208.57017 * 16 14 9 18 18 N 1.46507 * 110.62282 * 85.54974 * 16 14 9 19 19 C 1.34779 * 119.99455 * 155.00113 * 18 16 14 20 20 O 1.21629 * 120.00086 * 359.97438 * 19 18 16 21 21 C 1.47267 * 119.99543 * 180.02562 * 19 18 16 22 22 C 1.46685 * 126.94064 * 0.02562 * 21 19 18 23 23 C 1.34488 * 106.32844 * 179.97438 * 22 21 19 24 24 N 1.36442 * 108.85747 * 0.02562 * 23 22 21 25 25 H 0.97003 * 124.85190 * 180.02562 * 24 23 22 26 26 C 1.34665 * 110.29884 * 359.74971 * 24 23 22 27 27 C 1.50699 * 125.80162 * 180.29813 * 26 24 23 28 28 C 1.52995 * 117.50105 * 8.87291 * 27 26 24 29 29 C 1.53003 * 117.49928 * 300.21612 * 27 26 24 30 30 C 1.54853 * 103.44532 * 327.06431 * 16 14 9 31 31 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.62865 * 85.55047 * 12 10 9 33 33 H 1.08998 * 110.62667 * 208.41417 * 12 10 9 34 34 H 1.09006 * 110.09627 * 241.13600 * 13 12 10 35 35 H 1.09001 * 111.60505 * 117.80684 * 13 12 10 36 36 H 0.97001 * 119.99889 * 335.00438 * 18 16 14 37 37 H 1.07994 * 126.83583 * 359.95895 * 22 21 19 38 38 H 1.08002 * 125.57325 * 179.97438 * 23 22 21 39 39 H 1.08997 * 115.55275 * 154.54587 * 27 26 24 40 40 H 1.09002 * 117.50144 * 0.02562 * 28 27 26 41 41 H 1.09007 * 117.50045 * 145.02344 * 28 27 26 42 42 H 1.09004 * 117.50133 * 214.98653 * 29 27 26 43 43 H 1.09001 * 117.49819 * 359.97438 * 29 27 26 44 44 H 1.08997 * 110.62526 * 241.50943 * 30 16 14 45 45 H 1.09001 * 110.62973 * 118.48666 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8012 -1.7966 -0.0063 12 6 -0.2740 -3.6109 1.2361 13 6 1.0818 -4.3800 1.2469 14 6 1.8189 -3.8071 -0.0005 15 1 2.9015 -3.9342 -0.0063 16 6 1.0675 -4.3846 -1.2378 17 1 0.8936 -5.4538 -1.1169 18 7 1.8176 -4.1181 -2.4677 19 6 1.6537 -4.9143 -3.5428 20 8 0.8836 -5.8543 -3.4916 21 6 2.4081 -4.6468 -4.7789 22 6 3.3713 -3.5642 -5.0071 23 6 3.8100 -3.7084 -6.2702 24 7 3.1933 -4.7888 -6.8306 25 1 3.3402 -5.1028 -7.7366 26 6 2.3559 -5.3605 -5.9443 27 6 1.5045 -6.5785 -6.1949 28 6 1.7426 -7.3518 -7.4934 29 6 0.4796 -6.5030 -7.3284 30 6 -0.2736 -3.6103 -1.2381 31 1 -0.4850 0.8400 0.0004 32 1 -0.3812 -3.0291 2.1516 33 1 -1.1146 -4.2942 1.1160 34 1 0.9066 -5.4497 1.1318 35 1 1.6503 -4.1784 2.1548 36 1 2.4321 -3.3686 -2.5083 37 1 3.6688 -2.8029 -4.3013 38 1 4.5317 -3.0724 -6.7611 39 1 1.2339 -7.1532 -5.3092 40 1 2.5152 -6.9800 -8.1663 41 1 1.6282 -8.4354 -7.4620 42 1 -0.4652 -7.0283 -7.1885 43 1 0.4208 -5.5722 -7.8926 44 1 -1.1126 -4.2956 -1.1174 45 1 -0.3807 -3.0281 -2.1534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097732262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:39 Heat of formation + Delta-G solvation = 78.338582 kcal Electronic energy + Delta-G solvation = -26685.845652 eV Core-core repulsion = 23091.927178 eV Total energy + Delta-G solvation = -3593.918475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.30932 -39.39918 -37.85079 -36.95554 -33.53325 -32.45008 -31.00354 -29.14887 -29.02305 -28.67969 -27.55178 -24.21609 -23.44813 -22.62785 -22.14106 -20.89642 -20.28487 -19.65546 -19.07087 -18.42046 -17.80967 -16.92246 -15.73757 -15.66787 -15.40848 -14.76879 -14.61683 -14.31203 -13.95725 -13.89759 -13.53365 -13.30306 -13.14975 -12.65915 -12.30609 -11.98658 -11.90015 -11.79616 -11.73987 -11.13141 -11.03452 -10.87787 -10.86932 -10.85113 -10.56647 -10.39437 -10.28338 -10.05175 -9.82074 -9.51662 -9.14626 -9.05583 -8.90247 -8.79899 -8.29004 -8.00177 -6.88048 -5.69090 -3.07682 1.84282 2.50653 3.07605 3.39252 3.44235 3.46390 3.67682 3.96945 4.05600 4.39236 4.45493 4.66959 4.83587 4.99657 5.09235 5.21731 5.35242 5.38667 5.44746 5.58291 5.65150 5.74728 5.80177 5.83706 5.85521 5.94732 6.07761 6.16023 6.18221 6.22859 6.30244 6.41315 6.52527 6.59595 6.70029 6.80119 6.85142 6.91714 6.96607 7.05587 7.28832 7.39898 7.45346 7.53496 7.85647 8.23010 8.30085 8.92293 9.12791 9.76042 10.58145 11.39985 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003965 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.848242 B = 7059.737780 C = 8247.052547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.212 4.212 8 H 0.078 0.922 9 N -0.591 5.591 10 C 0.153 3.847 11 H 0.152 0.848 12 C -0.138 4.138 13 C -0.127 4.127 14 C 0.125 3.875 15 H 0.085 0.915 16 C 0.132 3.868 17 H 0.079 0.921 18 N -0.700 5.700 19 C 0.586 3.414 20 O -0.564 6.564 21 C -0.217 4.217 22 C -0.162 4.162 23 C -0.020 4.020 24 N -0.555 5.555 25 H 0.411 0.589 26 C 0.126 3.874 27 C -0.083 4.083 28 C -0.186 4.186 29 C -0.166 4.166 30 C -0.143 4.143 31 H 0.253 0.747 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.402 0.598 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.144 0.856 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.094 -11.188 -12.838 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.340 4.340 8 H 0.095 0.905 9 N -0.312 5.312 10 C 0.047 3.953 11 H 0.169 0.831 12 C -0.177 4.177 13 C -0.167 4.167 14 C 0.016 3.984 15 H 0.104 0.896 16 C 0.025 3.975 17 H 0.097 0.903 18 N -0.349 5.349 19 C 0.374 3.626 20 O -0.445 6.445 21 C -0.227 4.227 22 C -0.187 4.187 23 C -0.147 4.147 24 N -0.151 5.151 25 H 0.247 0.753 26 C 0.009 3.991 27 C -0.102 4.102 28 C -0.223 4.223 29 C -0.203 4.203 30 C -0.183 4.183 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.237 0.763 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.162 0.838 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.070 0.930 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.631 -11.488 -12.877 17.867 hybrid contribution 0.940 1.235 -0.482 1.626 sum 5.571 -10.252 -13.360 17.738 Atomic orbital electron populations 1.69465 1.04985 1.24861 1.57466 1.24681 0.95562 0.97397 1.02978 0.86085 0.78483 0.83508 0.77471 1.21751 1.21783 1.20847 1.18997 0.90178 0.81956 1.42829 0.90457 1.46535 1.01663 0.98608 1.84418 1.23763 0.87378 0.95270 0.88905 0.83077 1.23229 0.95081 0.98269 1.01142 1.23024 0.97594 0.97617 0.98470 1.23158 0.96037 0.86919 0.92285 0.89649 1.22535 0.92650 0.98451 0.83826 0.90330 1.45769 1.45161 1.31430 1.12491 1.17318 0.81040 0.81887 0.82377 1.90669 1.38815 1.31188 1.83847 1.20249 1.06377 1.01160 0.94895 1.22153 0.99911 1.00154 0.96434 1.21672 1.03824 0.93740 0.95497 1.41468 1.34986 1.24757 1.13873 0.75296 1.19254 0.94827 0.95630 0.89385 1.20828 0.99607 0.94931 0.94843 1.23023 1.00181 0.99267 0.99851 1.23018 0.94239 1.01742 1.01334 1.23469 0.95075 0.98355 1.01438 0.93623 0.92825 0.93281 0.93104 0.92382 0.76334 0.83403 0.81428 0.83794 0.89567 0.87906 0.87841 0.88939 0.92970 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.04 10.46 55.49 0.58 -25.46 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.21 -5.58 10.59 -15.06 -0.16 -5.74 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.59 -14.25 2.98 -145.81 -0.43 -14.68 16 10 C 0.15 3.57 4.72 -62.78 -0.30 3.28 16 11 H 0.15 4.03 5.52 -51.93 -0.29 3.74 16 12 C -0.14 -2.79 6.46 -23.67 -0.15 -2.94 16 13 C -0.13 -2.37 6.53 -23.70 -0.15 -2.53 16 14 C 0.12 2.50 5.01 -62.82 -0.31 2.19 16 15 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 16 C 0.13 2.59 2.82 -65.43 -0.18 2.41 16 17 H 0.08 1.55 7.26 -51.93 -0.38 1.17 16 18 N -0.70 -13.14 5.07 -52.51 -0.27 -13.41 16 19 C 0.59 10.97 7.81 -12.59 -0.10 10.87 16 20 O -0.56 -11.68 14.54 5.25 0.08 -11.60 16 21 C -0.22 -3.47 6.29 -103.35 -0.65 -4.12 16 22 C -0.16 -2.22 10.56 -37.50 -0.40 -2.62 16 23 C -0.02 -0.22 11.89 -16.83 -0.20 -0.42 16 24 N -0.56 -5.66 5.80 -9.11 -0.05 -5.72 16 25 H 0.41 2.82 7.84 -40.82 -0.32 2.50 16 26 C 0.13 1.70 6.69 -81.88 -0.55 1.15 16 27 C -0.08 -1.02 5.61 -91.77 -0.51 -1.53 16 28 C -0.19 -1.59 10.13 -26.70 -0.27 -1.86 16 29 C -0.17 -1.66 10.24 -26.70 -0.27 -1.93 16 30 C -0.14 -3.05 6.23 -24.21 -0.15 -3.20 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.05 0.89 7.82 -51.93 -0.41 0.48 16 34 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 35 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.40 7.42 7.78 -40.82 -0.32 7.10 16 37 H 0.15 1.93 7.69 -52.49 -0.40 1.53 16 38 H 0.17 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.14 2.08 6.64 -51.93 -0.34 1.73 16 40 H 0.09 0.58 7.09 -51.93 -0.37 0.22 16 41 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.05 1.04 7.82 -51.93 -0.41 0.63 16 45 H 0.06 1.38 7.98 -51.93 -0.41 0.97 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -31.28 361.14 -10.70 -41.98 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -6.56 Total: 14.30 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: -4.46 Total: -7.37 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.17 Total: -59.26 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.08 Total: -11.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.28 -10.70 -41.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097732262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.314 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds