Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48508 * 109.47071 * 270.00459 * 3 2 1 5 5 H 1.48495 * 109.47075 * 29.99978 * 3 2 1 6 6 H 1.48498 * 109.47523 * 150.00131 * 3 2 1 7 7 C 1.38806 * 120.00533 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00404 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99943 * 359.97438 * 7 2 1 10 10 C 1.50240 * 130.83587 * 0.02716 * 9 7 2 11 11 H 1.08997 * 115.85750 * 0.33431 * 10 9 7 12 12 C 1.55847 * 101.05077 * 233.94644 * 10 9 7 13 13 C 1.55877 * 103.52933 * 327.67019 * 12 10 9 14 14 C 1.50240 * 130.84094 * 180.02562 * 9 7 2 15 15 H 1.09002 * 115.85732 * 359.66289 * 14 9 7 16 16 C 1.55848 * 101.05163 * 233.98621 * 14 9 7 17 17 H 1.09000 * 110.62759 * 208.57017 * 16 14 9 18 18 N 1.46507 * 110.62282 * 85.54974 * 16 14 9 19 19 C 1.34779 * 119.99455 * 155.00113 * 18 16 14 20 20 O 1.21629 * 120.00086 * 359.97438 * 19 18 16 21 21 C 1.47267 * 119.99543 * 180.02562 * 19 18 16 22 22 C 1.46685 * 126.94064 * 0.02562 * 21 19 18 23 23 C 1.34488 * 106.32844 * 179.97438 * 22 21 19 24 24 N 1.36442 * 108.85747 * 0.02562 * 23 22 21 25 25 H 0.97003 * 124.85190 * 180.02562 * 24 23 22 26 26 C 1.34665 * 110.29884 * 359.74971 * 24 23 22 27 27 C 1.50699 * 125.80162 * 180.29813 * 26 24 23 28 28 C 1.52995 * 117.50105 * 8.87291 * 27 26 24 29 29 C 1.53003 * 117.49928 * 300.21612 * 27 26 24 30 30 C 1.54853 * 103.44532 * 327.06431 * 16 14 9 31 31 H 0.97003 * 120.00245 * 359.97438 * 1 2 3 32 32 H 1.09003 * 110.62865 * 85.55047 * 12 10 9 33 33 H 1.08998 * 110.62667 * 208.41417 * 12 10 9 34 34 H 1.09006 * 110.09627 * 241.13600 * 13 12 10 35 35 H 1.09001 * 111.60505 * 117.80684 * 13 12 10 36 36 H 0.97001 * 119.99889 * 335.00438 * 18 16 14 37 37 H 1.07994 * 126.83583 * 359.95895 * 22 21 19 38 38 H 1.08002 * 125.57325 * 179.97438 * 23 22 21 39 39 H 1.08997 * 115.55275 * 154.54587 * 27 26 24 40 40 H 1.09002 * 117.50144 * 0.02562 * 28 27 26 41 41 H 1.09007 * 117.50045 * 145.02344 * 28 27 26 42 42 H 1.09004 * 117.50133 * 214.98653 * 29 27 26 43 43 H 1.09001 * 117.49819 * 359.97438 * 29 27 26 44 44 H 1.08997 * 110.62526 * 241.50943 * 30 16 14 45 45 H 1.09001 * 110.62973 * 118.48666 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4002 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1499 -2.6706 -0.0006 11 1 -0.8012 -1.7966 -0.0063 12 6 -0.2740 -3.6109 1.2361 13 6 1.0818 -4.3800 1.2469 14 6 1.8189 -3.8071 -0.0005 15 1 2.9015 -3.9342 -0.0063 16 6 1.0675 -4.3846 -1.2378 17 1 0.8936 -5.4538 -1.1169 18 7 1.8176 -4.1181 -2.4677 19 6 1.6537 -4.9143 -3.5428 20 8 0.8836 -5.8543 -3.4916 21 6 2.4081 -4.6468 -4.7789 22 6 3.3713 -3.5642 -5.0071 23 6 3.8100 -3.7084 -6.2702 24 7 3.1933 -4.7888 -6.8306 25 1 3.3402 -5.1028 -7.7366 26 6 2.3559 -5.3605 -5.9443 27 6 1.5045 -6.5785 -6.1949 28 6 1.7426 -7.3518 -7.4934 29 6 0.4796 -6.5030 -7.3284 30 6 -0.2736 -3.6103 -1.2381 31 1 -0.4850 0.8400 0.0004 32 1 -0.3812 -3.0291 2.1516 33 1 -1.1146 -4.2942 1.1160 34 1 0.9066 -5.4497 1.1318 35 1 1.6503 -4.1784 2.1548 36 1 2.4321 -3.3686 -2.5083 37 1 3.6688 -2.8029 -4.3013 38 1 4.5317 -3.0724 -6.7611 39 1 1.2339 -7.1532 -5.3092 40 1 2.5152 -6.9800 -8.1663 41 1 1.6282 -8.4354 -7.4620 42 1 -0.4652 -7.0283 -7.1885 43 1 0.4208 -5.5722 -7.8926 44 1 -1.1126 -4.2956 -1.1174 45 1 -0.3807 -3.0281 -2.1534 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097732262.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = 59.858970 kcal Electronic energy + Delta-G solvation = -26686.646988 eV Core-core repulsion = 23091.927178 eV Total energy + Delta-G solvation = -3594.719811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.29387 -41.01394 -39.37661 -37.76816 -35.14792 -34.34353 -32.09151 -30.92603 -30.35715 -30.07553 -29.15665 -26.12492 -24.68758 -23.34569 -23.20535 -22.29330 -21.56974 -21.19685 -20.57098 -19.97326 -18.81284 -18.72597 -17.15402 -17.00392 -16.72301 -16.33700 -15.90379 -15.64948 -15.40580 -15.11807 -14.99519 -14.69489 -14.25636 -14.10484 -13.68630 -13.62147 -13.28807 -12.89431 -12.84493 -12.83207 -12.72999 -12.64326 -12.48839 -12.05222 -11.94362 -11.87656 -11.67902 -11.65299 -11.39866 -11.14977 -10.91068 -10.88647 -10.59721 -9.96926 -9.66915 -9.02980 -8.83107 -7.72538 -5.12313 0.73038 1.50670 1.51490 1.53339 1.59645 2.15747 2.52658 2.58482 2.63393 2.99555 3.40940 3.48228 3.55743 3.86147 4.02365 4.06694 4.10769 4.13813 4.27153 4.29167 4.31636 4.50004 4.51730 4.58467 4.66052 4.67889 4.74358 4.85671 4.89878 4.92767 4.97018 5.10563 5.11602 5.14861 5.19009 5.20886 5.30215 5.40694 5.54887 5.65708 5.75864 5.81594 5.92677 5.98931 6.30015 6.63011 6.83611 7.08978 7.47146 7.75644 8.62125 9.35016 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.003965 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.848242 B = 7059.737780 C = 8247.052547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.068 4.068 3 Si 0.975 3.025 4 H -0.290 1.290 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.213 4.213 8 H 0.085 0.915 9 N -0.610 5.610 10 C 0.140 3.860 11 H 0.116 0.884 12 C -0.130 4.130 13 C -0.118 4.118 14 C 0.126 3.874 15 H 0.098 0.902 16 C 0.142 3.858 17 H 0.084 0.916 18 N -0.702 5.702 19 C 0.580 3.420 20 O -0.592 6.592 21 C -0.264 4.264 22 C -0.193 4.193 23 C 0.005 3.995 24 N -0.536 5.536 25 H 0.431 0.569 26 C 0.134 3.866 27 C -0.117 4.117 28 C -0.153 4.153 29 C -0.166 4.166 30 C -0.133 4.133 31 H 0.245 0.755 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.402 0.598 37 H 0.145 0.855 38 H 0.211 0.789 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.095 -12.446 -14.816 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.260 4.260 3 Si 0.805 3.195 4 H -0.217 1.217 5 H -0.228 1.228 6 H -0.196 1.196 7 C -0.342 4.342 8 H 0.102 0.898 9 N -0.331 5.331 10 C 0.034 3.966 11 H 0.133 0.867 12 C -0.169 4.169 13 C -0.157 4.157 14 C 0.019 3.981 15 H 0.116 0.884 16 C 0.035 3.965 17 H 0.102 0.898 18 N -0.350 5.350 19 C 0.371 3.629 20 O -0.476 6.476 21 C -0.274 4.274 22 C -0.216 4.216 23 C -0.123 4.123 24 N -0.133 5.133 25 H 0.271 0.729 26 C 0.015 3.985 27 C -0.137 4.137 28 C -0.190 4.190 29 C -0.203 4.203 30 C -0.173 4.173 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.162 0.838 38 H 0.227 0.773 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.667 -12.778 -14.880 20.716 hybrid contribution 0.309 1.557 0.053 1.588 sum 6.976 -11.220 -14.828 19.860 Atomic orbital electron populations 1.69724 1.06258 1.24708 1.59220 1.25427 0.96308 1.00352 1.03923 0.85115 0.77582 0.79689 0.77163 1.21706 1.22807 1.19553 1.19356 0.90735 0.82997 1.41109 0.89767 1.46719 1.02217 0.99622 1.84587 1.23598 0.86793 0.95072 0.91170 0.86672 1.23122 0.97105 0.97994 0.98723 1.22977 0.96108 0.98939 0.97699 1.23344 0.96945 0.84778 0.93040 0.88422 1.22365 0.91664 0.98166 0.84258 0.89815 1.45745 1.45134 1.31622 1.12494 1.17800 0.80798 0.81206 0.83103 1.90636 1.40182 1.32303 1.84436 1.20239 1.08497 1.03736 0.94904 1.22249 1.00852 1.00345 0.98197 1.22227 1.02682 0.93074 0.94278 1.41445 1.33505 1.24060 1.14318 0.72904 1.19344 0.94624 0.95400 0.89164 1.20697 1.01903 0.95629 0.95436 1.23170 0.99376 0.99759 0.96678 1.23093 0.94823 1.02543 0.99872 1.23330 0.96806 0.97993 0.99178 0.94578 0.94281 0.91018 0.90169 0.91885 0.76339 0.83772 0.77264 0.86789 0.87010 0.86584 0.87721 0.88448 0.91710 0.95228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.84 10.46 21.65 0.23 -55.61 16 2 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 3 Si 0.97 45.06 29.55 68.60 2.03 47.09 16 4 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.21 -11.37 10.59 84.03 0.89 -10.48 16 8 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 9 N -0.61 -29.76 2.98 -615.23 -1.83 -31.60 16 10 C 0.14 6.71 4.72 46.24 0.22 6.92 16 11 H 0.12 6.46 5.52 -2.39 -0.01 6.45 16 12 C -0.13 -5.22 6.46 32.57 0.21 -5.00 16 13 C -0.12 -4.19 6.53 32.56 0.21 -3.97 16 14 C 0.13 4.99 5.01 46.21 0.23 5.22 16 15 H 0.10 3.61 8.14 -2.39 -0.02 3.59 16 16 C 0.14 5.61 2.82 46.61 0.13 5.74 16 17 H 0.08 3.25 7.26 -2.39 -0.02 3.23 16 18 N -0.70 -27.01 5.07 -438.28 -2.22 -29.23 16 19 C 0.58 22.42 7.81 86.62 0.68 23.10 16 20 O -0.59 -25.35 14.54 -4.12 -0.06 -25.41 16 21 C -0.26 -8.50 6.29 -19.04 -0.12 -8.62 16 22 C -0.19 -5.13 10.56 23.62 0.25 -4.89 16 23 C 0.00 0.09 11.89 83.12 0.99 1.08 16 24 N -0.54 -9.32 5.80 -182.73 -1.06 -10.38 16 25 H 0.43 4.06 7.84 -92.71 -0.73 3.33 16 26 C 0.13 3.45 6.69 41.78 0.28 3.73 16 27 C -0.12 -2.78 5.61 -11.54 -0.06 -2.85 16 28 C -0.15 -2.15 10.13 30.61 0.31 -1.84 16 29 C -0.17 -3.04 10.24 30.62 0.31 -2.73 16 30 C -0.13 -5.80 6.23 32.23 0.20 -5.60 16 31 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.52 7.82 -2.39 -0.02 2.50 16 34 H 0.08 2.42 7.85 -2.38 -0.02 2.40 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.40 15.30 7.78 -92.71 -0.72 14.58 16 37 H 0.14 3.80 7.69 -2.91 -0.02 3.77 16 38 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 39 H 0.11 3.41 6.64 -2.39 -0.02 3.40 16 40 H 0.11 1.00 7.09 -2.39 -0.02 0.98 16 41 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 2.61 7.82 -2.39 -0.02 2.59 16 45 H 0.03 1.43 7.98 -2.39 -0.02 1.41 16 Total: -1.00 -71.14 361.14 1.85 -69.29 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -0.42 Total: 39.32 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 5.19 Total: -3.47 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -4.89 Total: -126.81 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.06 Total: -25.41 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.14 1.85 -69.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097732262.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.145 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds