Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47438 * 240.00487 * 3 2 1 5 5 H 1.48504 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47160 * 120.00270 * 3 2 1 7 7 C 1.38802 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00200 * 180.02562 * 9 7 2 11 11 C 1.53779 * 113.61635 * 154.99766 * 10 9 7 12 12 C 1.53780 * 87.08310 * 139.97999 * 11 10 9 13 13 C 1.53003 * 113.61393 * 220.01989 * 12 11 10 14 14 N 1.46496 * 109.46861 * 184.99928 * 13 12 11 15 15 C 1.34777 * 120.00110 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99608 * 354.53372 * 15 14 13 17 17 C 1.50697 * 120.00439 * 174.54351 * 15 14 13 18 18 C 1.50704 * 115.54878 * 302.81856 * 17 15 14 19 19 C 1.38671 * 120.41646 * 328.91219 * 18 17 15 20 20 C 1.38630 * 118.41564 * 179.97438 * 19 18 17 21 21 C 1.38218 * 119.16431 * 359.97438 * 20 19 18 22 22 N 1.31858 * 120.76642 * 359.97438 * 21 20 19 23 23 C 1.31886 * 121.72116 * 359.70980 * 22 21 20 24 24 C 1.52999 * 117.49980 * 157.15569 * 17 15 14 25 25 C 1.53000 * 117.50180 * 88.49254 * 17 15 14 26 26 C 1.53782 * 87.08085 * 334.56666 * 12 11 10 27 27 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99621 * 359.97438 * 9 7 2 29 29 H 1.09002 * 112.85045 * 23.80166 * 10 9 7 30 30 H 1.09008 * 113.61598 * 25.42688 * 11 10 9 31 31 H 1.09001 * 113.61208 * 254.52802 * 11 10 9 32 32 H 1.08999 * 113.61168 * 89.11635 * 12 11 10 33 33 H 1.08999 * 109.47022 * 304.99868 * 13 12 11 34 34 H 1.09000 * 109.47302 * 64.99822 * 13 12 11 35 35 H 0.96995 * 120.00504 * 359.97438 * 14 13 12 36 36 H 1.07998 * 120.79108 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.41480 * 180.02562 * 20 19 18 38 38 H 1.08005 * 119.61980 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.61667 * 180.31158 * 23 22 21 40 40 H 1.09003 * 117.50081 * 359.97438 * 24 17 15 41 41 H 1.09000 * 117.50374 * 145.02137 * 24 17 15 42 42 H 1.09001 * 117.49781 * 214.98329 * 25 17 15 43 43 H 1.08997 * 117.49577 * 359.97438 * 25 17 15 44 44 H 1.08998 * 113.61583 * 139.97734 * 26 12 11 45 45 H 1.09000 * 113.61700 * 270.88880 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2603 -4.8287 0.5950 12 6 1.8481 -5.6976 -0.5295 13 6 0.8449 -6.6852 -1.1289 14 7 1.5261 -7.5431 -2.1016 15 6 0.8358 -8.4949 -2.7605 16 8 -0.3242 -8.7079 -2.4777 17 6 1.5054 -9.2946 -3.8482 18 6 2.0887 -8.4900 -4.9811 19 6 1.5089 -7.2888 -5.3605 20 6 2.0800 -6.5824 -6.4077 21 6 3.2006 -7.0947 -7.0339 22 7 3.7258 -8.2401 -6.6456 23 6 3.2130 -8.9359 -5.6495 24 6 0.9110 -10.6632 -4.1866 25 6 2.2417 -10.5707 -3.4356 26 6 1.9991 -4.4021 -1.3444 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3880 0.0002 29 1 3.0657 -3.5638 0.4048 30 1 0.1799 -4.7002 0.5282 31 1 1.5920 -5.1211 1.5913 32 1 2.7987 -6.1634 -0.2698 33 1 0.4222 -7.3006 -0.3348 34 1 0.0462 -6.1350 -1.6263 35 1 2.4737 -7.4258 -2.2720 36 1 0.6338 -6.9123 -4.8518 37 1 1.6551 -5.6430 -6.7295 38 1 3.6512 -6.5506 -7.8508 39 1 3.6738 -9.8676 -5.3563 40 1 0.0359 -10.9854 -3.6222 41 1 0.9423 -10.9819 -5.2285 42 1 3.1479 -10.8285 -3.9837 43 1 2.2422 -10.8316 -2.3773 44 1 2.9271 -4.3500 -1.9136 45 1 1.1207 -4.1569 -1.9414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100599475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 55.201657 kcal Electronic energy + Delta-G solvation = -25478.046607 eV Core-core repulsion = 21883.124840 eV Total energy + Delta-G solvation = -3594.921767 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.10666 -39.73207 -38.62339 -36.90664 -34.76006 -33.32564 -32.71256 -31.15276 -30.32378 -27.83419 -25.24366 -25.10689 -23.98978 -23.88837 -22.76722 -22.47749 -21.08350 -19.98535 -19.03173 -17.97313 -17.24788 -17.04509 -16.41362 -16.15960 -15.71652 -15.15931 -15.00376 -14.82575 -14.57114 -14.20426 -14.11463 -13.62697 -13.37751 -13.19169 -13.11793 -12.92299 -12.37963 -11.95401 -11.86549 -11.84520 -11.47767 -11.42751 -11.25518 -11.05674 -10.84853 -10.56565 -10.34483 -10.20749 -10.08613 -9.98101 -9.86302 -9.65496 -9.50258 -9.18631 -9.07899 -8.89128 -6.99316 -5.80739 -3.09842 0.72888 0.97062 2.31843 2.94419 3.24212 3.41236 3.45825 3.46855 3.63257 3.94661 4.21310 4.37016 4.38636 4.49465 4.55939 4.63032 4.68311 4.91519 4.93495 4.95476 5.11338 5.16400 5.19120 5.34374 5.43597 5.46247 5.47029 5.48666 5.70279 5.76893 5.78062 5.84332 5.89654 5.93062 6.05912 6.20190 6.27394 6.31665 6.35176 6.39891 6.55513 6.78794 7.07267 7.37137 7.64077 7.66029 8.05698 8.37838 9.48799 10.06785 10.41004 11.41569 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002826 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.703825 B = 9905.077339 C =11106.909035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.713 5.713 10 C 0.166 3.834 11 C -0.142 4.142 12 C -0.127 4.127 13 C 0.132 3.868 14 N -0.716 5.716 15 C 0.550 3.450 16 O -0.535 6.535 17 C -0.122 4.122 18 C -0.096 4.096 19 C -0.061 4.061 20 C -0.162 4.162 21 C 0.096 3.904 22 N -0.481 5.481 23 C 0.100 3.900 24 C -0.131 4.131 25 C -0.153 4.153 26 C -0.160 4.160 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.402 0.598 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.158 0.842 39 H 0.156 0.844 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.106 0.894 44 H 0.053 0.947 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.765 -21.929 -10.326 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.088 0.912 9 N -0.350 5.350 10 C 0.054 3.946 11 C -0.182 4.182 12 C -0.146 4.146 13 C 0.009 3.991 14 N -0.367 5.367 15 C 0.335 3.665 16 O -0.412 6.412 17 C -0.126 4.126 18 C -0.099 4.099 19 C -0.087 4.087 20 C -0.182 4.182 21 C -0.061 4.061 22 N -0.189 5.189 23 C -0.057 4.057 24 C -0.169 4.169 25 C -0.190 4.190 26 C -0.201 4.201 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.236 0.764 36 H 0.151 0.849 37 H 0.157 0.843 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.072 0.928 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.756 -22.156 -10.534 25.199 hybrid contribution -0.203 1.466 0.294 1.509 sum 5.553 -20.689 -10.240 23.743 Atomic orbital electron populations 1.69649 1.05144 1.25903 1.57348 1.24764 0.95517 0.97785 1.02770 0.86269 0.78549 0.83497 0.77873 1.21224 1.21657 1.21217 1.19258 0.91039 0.84261 1.43122 0.91162 1.42404 1.05750 0.99870 1.87013 1.21515 0.95322 0.85053 0.92733 1.23452 1.01033 0.97002 0.96703 1.22640 0.98361 0.94385 0.99257 1.21482 0.95273 0.91459 0.90906 1.45987 1.13310 1.35007 1.42352 1.19250 0.86117 0.79810 0.81352 1.90722 1.16810 1.67288 1.66376 1.20073 1.06466 0.89872 0.96219 1.19766 0.97087 0.95901 0.97098 1.21478 0.98730 0.93185 0.95310 1.22210 0.97585 1.01449 0.96942 1.22830 0.92943 0.91940 0.98399 1.67743 1.30997 1.07027 1.13103 1.22629 0.92298 0.99204 0.91520 1.23110 0.97598 0.94062 1.02102 1.23207 0.96866 0.96669 1.02279 1.23941 1.01275 0.94922 0.99967 0.93370 0.78068 0.90678 0.90101 0.91969 0.89378 0.91582 0.91224 0.76440 0.84923 0.84284 0.82518 0.82695 0.86999 0.87674 0.87272 0.87562 0.92850 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.71 -17.60 5.40 -52.64 -0.28 -17.88 16 10 C 0.17 3.16 4.48 -67.12 -0.30 2.86 16 11 C -0.14 -2.21 7.39 -25.92 -0.19 -2.40 16 12 C -0.13 -1.65 3.75 -89.81 -0.34 -1.99 16 13 C 0.13 1.66 5.52 -4.04 -0.02 1.64 16 14 N -0.72 -7.89 5.53 -60.30 -0.33 -8.22 16 15 C 0.55 6.64 6.08 -10.99 -0.07 6.57 16 16 O -0.54 -8.47 16.52 5.55 0.09 -8.38 16 17 C -0.12 -1.12 2.38 -156.81 -0.37 -1.49 16 18 C -0.10 -0.90 5.46 -104.48 -0.57 -1.47 16 19 C -0.06 -0.62 9.44 -39.28 -0.37 -0.99 16 20 C -0.16 -1.48 10.11 -39.44 -0.40 -1.87 16 21 C 0.10 0.87 11.18 -17.55 -0.20 0.67 16 22 N -0.48 -4.95 10.36 -13.25 -0.14 -5.09 16 23 C 0.10 0.90 10.54 -17.55 -0.18 0.71 16 24 C -0.13 -1.03 9.73 -26.69 -0.26 -1.29 16 25 C -0.15 -1.00 9.59 -26.69 -0.26 -1.26 16 26 C -0.16 -2.58 7.43 -25.92 -0.19 -2.77 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.39 10.14 7.92 -40.82 -0.32 9.81 16 29 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 30 H 0.08 1.32 8.08 -51.92 -0.42 0.90 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 35 H 0.40 3.77 8.48 -40.82 -0.35 3.43 16 36 H 0.13 1.44 7.47 -52.49 -0.39 1.05 16 37 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.16 1.04 8.06 -52.48 -0.42 0.61 16 39 H 0.16 1.01 5.96 -52.49 -0.31 0.70 16 40 H 0.11 0.99 7.86 -51.93 -0.41 0.58 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.11 0.50 6.12 -51.93 -0.32 0.18 16 43 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -32.75 377.13 -9.93 -42.68 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.69 Total: 11.75 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -3.97 Total: -10.42 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.03 Total: -58.47 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.75 -9.93 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100599475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.883 kcal (2) G-P(sol) polarization free energy of solvation -32.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds