Wall clock time and date at job start Tue Mar 31 2020 10:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99814 * 2 1 4 4 H 1.48500 * 109.47438 * 240.00487 * 3 2 1 5 5 H 1.48504 * 109.47236 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47160 * 120.00270 * 3 2 1 7 7 C 1.38802 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00015 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00259 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00200 * 180.02562 * 9 7 2 11 11 C 1.53779 * 113.61635 * 154.99766 * 10 9 7 12 12 C 1.53780 * 87.08310 * 139.97999 * 11 10 9 13 13 C 1.53003 * 113.61393 * 220.01989 * 12 11 10 14 14 N 1.46496 * 109.46861 * 184.99928 * 13 12 11 15 15 C 1.34777 * 120.00110 * 180.02562 * 14 13 12 16 16 O 1.21286 * 119.99608 * 354.53372 * 15 14 13 17 17 C 1.50697 * 120.00439 * 174.54351 * 15 14 13 18 18 C 1.50704 * 115.54878 * 302.81856 * 17 15 14 19 19 C 1.38671 * 120.41646 * 328.91219 * 18 17 15 20 20 C 1.38630 * 118.41564 * 179.97438 * 19 18 17 21 21 C 1.38218 * 119.16431 * 359.97438 * 20 19 18 22 22 N 1.31858 * 120.76642 * 359.97438 * 21 20 19 23 23 C 1.31886 * 121.72116 * 359.70980 * 22 21 20 24 24 C 1.52999 * 117.49980 * 157.15569 * 17 15 14 25 25 C 1.53000 * 117.50180 * 88.49254 * 17 15 14 26 26 C 1.53782 * 87.08085 * 334.56666 * 12 11 10 27 27 H 0.96998 * 120.00416 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99621 * 359.97438 * 9 7 2 29 29 H 1.09002 * 112.85045 * 23.80166 * 10 9 7 30 30 H 1.09008 * 113.61598 * 25.42688 * 11 10 9 31 31 H 1.09001 * 113.61208 * 254.52802 * 11 10 9 32 32 H 1.08999 * 113.61168 * 89.11635 * 12 11 10 33 33 H 1.08999 * 109.47022 * 304.99868 * 13 12 11 34 34 H 1.09000 * 109.47302 * 64.99822 * 13 12 11 35 35 H 0.96995 * 120.00504 * 359.97438 * 14 13 12 36 36 H 1.07998 * 120.79108 * 0.02562 * 19 18 17 37 37 H 1.08002 * 120.41480 * 180.02562 * 20 19 18 38 38 H 1.08005 * 119.61980 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.61667 * 180.31158 * 23 22 21 40 40 H 1.09003 * 117.50081 * 359.97438 * 24 17 15 41 41 H 1.09000 * 117.50374 * 145.02137 * 24 17 15 42 42 H 1.09001 * 117.49781 * 214.98329 * 25 17 15 43 43 H 1.08997 * 117.49577 * 359.97438 * 25 17 15 44 44 H 1.08998 * 113.61583 * 139.97734 * 26 12 11 45 45 H 1.09000 * 113.61700 * 270.88880 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.2603 -4.8287 0.5950 12 6 1.8481 -5.6976 -0.5295 13 6 0.8449 -6.6852 -1.1289 14 7 1.5261 -7.5431 -2.1016 15 6 0.8358 -8.4949 -2.7605 16 8 -0.3242 -8.7079 -2.4777 17 6 1.5054 -9.2946 -3.8482 18 6 2.0887 -8.4900 -4.9811 19 6 1.5089 -7.2888 -5.3605 20 6 2.0800 -6.5824 -6.4077 21 6 3.2006 -7.0947 -7.0339 22 7 3.7258 -8.2401 -6.6456 23 6 3.2130 -8.9359 -5.6495 24 6 0.9110 -10.6632 -4.1866 25 6 2.2417 -10.5707 -3.4356 26 6 1.9991 -4.4021 -1.3444 27 1 -0.4851 0.8400 0.0004 28 1 0.3556 -2.3880 0.0002 29 1 3.0657 -3.5638 0.4048 30 1 0.1799 -4.7002 0.5282 31 1 1.5920 -5.1211 1.5913 32 1 2.7987 -6.1634 -0.2698 33 1 0.4222 -7.3006 -0.3348 34 1 0.0462 -6.1350 -1.6263 35 1 2.4737 -7.4258 -2.2720 36 1 0.6338 -6.9123 -4.8518 37 1 1.6551 -5.6430 -6.7295 38 1 3.6512 -6.5506 -7.8508 39 1 3.6738 -9.8676 -5.3563 40 1 0.0359 -10.9854 -3.6222 41 1 0.9423 -10.9819 -5.2285 42 1 3.1479 -10.8285 -3.9837 43 1 2.2422 -10.8316 -2.3773 44 1 2.9271 -4.3500 -1.9136 45 1 1.1207 -4.1569 -1.9414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100599475.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:21 Heat of formation + Delta-G solvation = 34.011503 kcal Electronic energy + Delta-G solvation = -25478.965481 eV Core-core repulsion = 21883.124840 eV Total energy + Delta-G solvation = -3595.840641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87491 -40.65280 -39.88104 -37.68293 -36.08297 -35.03543 -33.43443 -32.21038 -31.80461 -29.08459 -26.48176 -26.30741 -25.47893 -24.68274 -23.58478 -23.16915 -22.37801 -21.06072 -20.29902 -19.07758 -18.69053 -17.96847 -17.31809 -17.10805 -16.69386 -16.49420 -16.18971 -15.76807 -15.66426 -15.37606 -15.14439 -14.88020 -14.75366 -14.38171 -14.03873 -13.79129 -13.43721 -13.26298 -13.04513 -13.01540 -12.93665 -12.63856 -12.40649 -12.28017 -12.13962 -12.05572 -11.76064 -11.60063 -11.54835 -11.16268 -10.98958 -10.82074 -10.73307 -10.38796 -10.13481 -9.82744 -8.98913 -7.95305 -5.23856 0.05438 0.24626 1.41053 1.46678 1.49501 1.55634 2.05613 2.56094 2.57264 2.95949 3.30777 3.36194 3.55105 3.60840 3.70991 3.72082 3.73250 3.88020 3.90063 3.94246 4.01506 4.23130 4.28236 4.32953 4.39394 4.46134 4.52282 4.62821 4.69615 4.76528 4.87527 4.93433 4.95192 4.96017 5.01730 5.11778 5.15610 5.19230 5.24952 5.32558 5.40101 5.51225 5.68648 5.70317 6.26892 6.46653 6.95981 7.13732 7.32450 8.10536 8.32378 9.28034 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015333 B = 0.002826 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.703825 B = 9905.077339 C =11106.909035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.078 4.078 3 Si 0.973 3.027 4 H -0.277 1.277 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.244 4.244 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.143 3.857 11 C -0.136 4.136 12 C -0.095 4.095 13 C 0.139 3.861 14 N -0.706 5.706 15 C 0.549 3.451 16 O -0.580 6.580 17 C -0.136 4.136 18 C -0.094 4.094 19 C -0.079 4.079 20 C -0.167 4.167 21 C 0.090 3.910 22 N -0.499 5.499 23 C 0.102 3.898 24 C -0.135 4.135 25 C -0.127 4.127 26 C -0.151 4.151 27 H 0.251 0.749 28 H 0.372 0.628 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.413 0.587 36 H 0.116 0.884 37 H 0.150 0.850 38 H 0.179 0.821 39 H 0.182 0.818 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.111 0.889 44 H 0.064 0.936 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.461 -23.708 -10.792 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.270 4.270 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.367 5.367 10 C 0.034 3.966 11 C -0.175 4.175 12 C -0.114 4.114 13 C 0.015 3.985 14 N -0.356 5.356 15 C 0.336 3.664 16 O -0.459 6.459 17 C -0.140 4.140 18 C -0.096 4.096 19 C -0.106 4.106 20 C -0.187 4.187 21 C -0.066 4.066 22 N -0.207 5.207 23 C -0.054 4.054 24 C -0.172 4.172 25 C -0.164 4.164 26 C -0.192 4.192 27 H 0.059 0.941 28 H 0.204 0.796 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.249 0.751 36 H 0.134 0.866 37 H 0.168 0.832 38 H 0.196 0.804 39 H 0.199 0.801 40 H 0.116 0.884 41 H 0.137 0.863 42 H 0.155 0.845 43 H 0.129 0.871 44 H 0.082 0.918 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 8.527 -23.980 -11.007 27.729 hybrid contribution -1.037 1.944 0.434 2.245 sum 7.491 -22.036 -10.574 25.564 Atomic orbital electron populations 1.69816 1.06712 1.26120 1.59636 1.25584 0.96347 1.01213 1.03846 0.85224 0.77193 0.79176 0.78262 1.20324 1.22391 1.20260 1.19695 0.91586 0.85411 1.40941 0.90367 1.42621 1.05338 1.01204 1.87551 1.21951 0.95621 0.83905 0.95149 1.23326 0.99943 0.95804 0.98456 1.22462 0.99375 0.92981 0.96605 1.21255 0.94750 0.91413 0.91096 1.45857 1.13734 1.34335 1.41713 1.19749 0.85587 0.79594 0.81483 1.90700 1.18772 1.68625 1.67846 1.19952 1.08192 0.90238 0.95612 1.19751 0.97197 0.95507 0.97136 1.21504 0.98742 0.94229 0.96088 1.22370 0.97731 1.01887 0.96671 1.23196 0.92769 0.91853 0.98777 1.67802 1.31574 1.07584 1.13748 1.22994 0.91771 0.99833 0.90850 1.23171 0.98148 0.92869 1.03052 1.23384 0.97028 0.93129 1.02810 1.23705 1.00856 0.96108 0.98522 0.94072 0.79641 0.90193 0.91432 0.90233 0.86227 0.91441 0.93444 0.75118 0.86596 0.83214 0.80415 0.80086 0.88433 0.86267 0.84491 0.87100 0.91774 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 4 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.24 -13.49 9.97 84.03 0.84 -12.65 16 8 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 9 N -0.73 -36.59 5.40 -320.45 -1.73 -38.32 16 10 C 0.14 5.35 4.48 45.52 0.20 5.56 16 11 C -0.14 -4.08 7.39 31.12 0.23 -3.85 16 12 C -0.10 -2.28 3.75 -10.27 -0.04 -2.32 16 13 C 0.14 3.39 5.52 86.38 0.48 3.87 16 14 N -0.71 -14.62 5.53 -463.06 -2.56 -17.18 16 15 C 0.55 12.93 6.08 87.66 0.53 13.46 16 16 O -0.58 -18.65 16.52 -3.05 -0.05 -18.70 16 17 C -0.14 -2.27 2.38 -53.67 -0.13 -2.40 16 18 C -0.09 -1.60 5.46 -19.77 -0.11 -1.71 16 19 C -0.08 -1.58 9.44 22.47 0.21 -1.37 16 20 C -0.17 -2.90 10.11 22.36 0.23 -2.68 16 21 C 0.09 1.49 11.18 84.68 0.95 2.44 16 22 N -0.50 -9.15 10.36 -195.84 -2.03 -11.18 16 23 C 0.10 1.55 10.54 84.67 0.89 2.44 16 24 C -0.14 -1.89 9.73 30.62 0.30 -1.59 16 25 C -0.13 -1.25 9.59 30.62 0.29 -0.96 16 26 C -0.15 -4.75 7.43 31.12 0.23 -4.51 16 27 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 28 H 0.37 20.27 7.92 -92.71 -0.73 19.54 16 29 H 0.08 2.90 8.10 -2.39 -0.02 2.88 16 30 H 0.07 2.23 8.08 -2.38 -0.02 2.21 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 35 H 0.41 6.76 8.48 -92.71 -0.79 5.97 16 36 H 0.12 2.64 7.47 -2.91 -0.02 2.62 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 38 H 0.18 2.00 8.06 -2.91 -0.02 1.97 16 39 H 0.18 1.62 5.96 -2.91 -0.02 1.60 16 40 H 0.10 1.67 7.86 -2.39 -0.02 1.65 16 41 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.14 0.60 6.12 -2.39 -0.01 0.59 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 2.02 7.90 -2.39 -0.02 2.00 16 Total: -1.00 -72.55 377.13 1.01 -71.54 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.51 Total: 35.81 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: 5.57 Total: -10.27 kcal Atomic # 7 Polarization: -120.32 SS G_CDS: -6.04 Total: -126.36 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.05 Total: -18.70 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -72.55 1.01 -71.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100599475.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.554 kcal (2) G-P(sol) polarization free energy of solvation -72.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds