Wall clock time and date at job start Tue Mar 31 2020 10:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 120.00230 * 2 1 4 4 H 1.48498 * 109.47164 * 240.00115 * 3 2 1 5 5 H 1.48496 * 109.47034 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46923 * 119.99981 * 3 2 1 7 7 C 1.38811 * 119.99467 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99578 * 179.97438 * 7 2 1 9 9 N 1.36937 * 120.00681 * 359.97438 * 7 2 1 10 10 C 1.50245 * 130.83342 * 0.03097 * 9 7 2 11 11 H 1.08997 * 116.45779 * 359.97438 * 10 9 7 12 12 C 1.55838 * 101.04893 * 233.96524 * 10 9 7 13 13 C 1.54850 * 103.44656 * 327.06407 * 12 10 9 14 14 C 1.50232 * 130.84415 * 180.02562 * 9 7 2 15 15 H 1.09004 * 116.45783 * 0.02562 * 14 9 7 16 16 C 1.55846 * 101.05385 * 233.97254 * 14 9 7 17 17 H 1.08996 * 110.76264 * 85.61141 * 16 14 9 18 18 N 1.46496 * 110.62693 * 208.57478 * 16 14 9 19 19 C 1.34779 * 119.99655 * 270.00092 * 18 16 14 20 20 O 1.21278 * 120.00358 * 0.02562 * 19 18 16 21 21 C 1.50706 * 119.99987 * 180.02562 * 19 18 16 22 22 C 1.52993 * 109.47225 * 179.97438 * 21 19 18 23 23 C 1.50696 * 109.47226 * 179.97438 * 22 21 19 24 24 C 1.38229 * 119.62001 * 124.73267 * 23 22 21 25 25 C 1.38627 * 119.15758 * 179.75749 * 24 23 22 26 26 C 1.38669 * 118.42555 * 0.50212 * 25 24 23 27 27 C 1.38186 * 119.15985 * 359.73042 * 26 25 24 28 28 N 1.31852 * 119.61590 * 304.99792 * 23 22 21 29 29 C 1.54862 * 103.44039 * 327.06154 * 16 14 9 30 30 H 0.96997 * 119.99783 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.62841 * 85.55216 * 12 10 9 32 32 H 1.08994 * 110.62978 * 208.57309 * 12 10 9 33 33 H 1.09002 * 110.62837 * 118.48997 * 13 12 10 34 34 H 1.09007 * 110.62830 * 241.35180 * 13 12 10 35 35 H 0.96998 * 120.00690 * 90.00192 * 18 16 14 36 36 H 1.09002 * 109.46929 * 59.99724 * 21 19 18 37 37 H 1.09002 * 109.46740 * 299.99894 * 21 19 18 38 38 H 1.09006 * 109.47030 * 59.99626 * 22 21 19 39 39 H 1.09005 * 109.47044 * 300.00156 * 22 21 19 40 40 H 1.08002 * 120.41713 * 359.97200 * 24 23 22 41 41 H 1.08009 * 120.78616 * 180.21055 * 25 24 23 42 42 H 1.08001 * 120.42401 * 179.71327 * 26 25 24 43 43 H 1.07998 * 119.61715 * 180.02562 * 27 26 25 44 44 H 1.08998 * 110.62246 * 118.49194 * 29 16 14 45 45 H 1.09003 * 110.62249 * 241.50888 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1502 -2.6706 -0.0006 11 1 -0.8106 -1.8034 -0.0003 12 6 -0.2745 -3.6104 1.2362 13 6 1.0666 -4.3847 1.2364 14 6 1.8185 -3.8073 -0.0005 15 1 2.8997 -3.9458 -0.0001 16 6 1.0668 -4.3847 -1.2375 17 1 1.6233 -4.1888 -2.1540 18 7 0.8329 -5.8217 -1.0748 19 6 1.7477 -6.7076 -1.5162 20 8 2.7647 -6.3151 -2.0478 21 6 1.5069 -8.1859 -1.3493 22 6 2.6887 -8.9640 -1.9312 23 6 2.4483 -10.4422 -1.7637 24 6 2.4889 -11.2705 -2.8696 25 6 2.2713 -12.6295 -2.7038 26 6 2.0094 -13.1053 -1.4279 27 6 1.9799 -12.2160 -0.3706 28 7 2.1964 -10.9296 -0.5648 29 6 -0.2743 -3.6103 -1.2375 30 1 -0.4850 0.8400 -0.0004 31 1 -0.3818 -3.0283 2.1515 32 1 -1.1134 -4.2955 1.1151 33 1 1.6243 -4.1866 2.1517 34 1 0.8925 -5.4542 1.1180 35 1 0.0197 -6.1357 -0.6493 36 1 0.5937 -8.4667 -1.8740 37 1 1.4038 -8.4198 -0.2897 38 1 3.6022 -8.6831 -1.4069 39 1 2.7915 -8.7299 -2.9908 40 1 2.6910 -10.8645 -3.8498 41 1 2.3003 -13.3012 -3.5491 42 1 1.8306 -14.1575 -1.2625 43 1 1.7770 -12.5786 0.6263 44 1 -0.3815 -3.0283 -2.1529 45 1 -1.1134 -4.2956 -1.1165 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109589965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:47 Heat of formation + Delta-G solvation = 20.611027 kcal Electronic energy + Delta-G solvation = -25814.370261 eV Core-core repulsion = 22217.948531 eV Total energy + Delta-G solvation = -3596.421729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.50889 -41.03100 -39.77682 -35.44710 -35.02935 -34.17881 -33.21304 -31.35218 -30.99365 -30.56319 -29.12458 -26.49749 -25.70263 -24.34150 -22.99751 -22.50892 -21.62676 -21.03745 -20.11230 -18.94053 -18.25381 -17.48336 -17.14748 -16.84642 -16.77113 -16.51608 -16.18901 -15.97518 -15.66792 -15.19307 -14.70853 -14.29584 -14.20080 -14.04080 -13.73448 -13.56505 -13.44353 -13.21760 -12.93753 -12.85084 -12.78739 -12.58104 -12.43100 -12.36376 -12.08453 -12.01514 -11.90283 -11.55824 -11.17575 -11.03590 -10.80990 -10.76590 -10.70966 -10.29847 -9.94066 -9.83642 -8.85330 -7.79674 -5.18774 0.22288 0.42691 1.45669 1.48233 1.54286 1.74330 2.25772 2.51283 2.91612 3.33405 3.37774 3.52552 3.77385 3.90911 3.98411 4.10623 4.11311 4.15988 4.22611 4.27356 4.31623 4.39604 4.43875 4.49291 4.61973 4.68744 4.74052 4.78715 4.82494 4.90014 4.98454 5.00951 5.07808 5.15312 5.15936 5.26926 5.33199 5.34306 5.34765 5.46834 5.56607 5.77714 5.86493 5.90170 6.26312 6.69944 7.05693 7.11905 7.39292 7.68954 8.55552 9.27267 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033557 B = 0.002438 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.207570 B =11481.600144 C =11746.964060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.070 0.930 9 N -0.618 5.618 10 C 0.140 3.860 11 H 0.119 0.881 12 C -0.126 4.126 13 C -0.116 4.116 14 C 0.117 3.883 15 H 0.065 0.935 16 C 0.146 3.854 17 H 0.052 0.948 18 N -0.700 5.700 19 C 0.508 3.492 20 O -0.590 6.590 21 C -0.115 4.115 22 C -0.050 4.050 23 C 0.114 3.886 24 C -0.177 4.177 25 C -0.077 4.077 26 C -0.177 4.177 27 C 0.086 3.914 28 N -0.509 5.509 29 C -0.127 4.127 30 H 0.249 0.751 31 H 0.034 0.966 32 H 0.088 0.912 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.147 0.853 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.174 0.826 44 H 0.044 0.956 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -27.930 -3.223 28.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.088 0.912 9 N -0.340 5.340 10 C 0.034 3.966 11 H 0.136 0.864 12 C -0.165 4.165 13 C -0.156 4.156 14 C 0.009 3.991 15 H 0.083 0.917 16 C 0.038 3.962 17 H 0.071 0.929 18 N -0.352 5.352 19 C 0.296 3.704 20 O -0.470 6.470 21 C -0.155 4.155 22 C -0.089 4.089 23 C -0.023 4.023 24 C -0.197 4.197 25 C -0.102 4.102 26 C -0.196 4.196 27 C -0.071 4.071 28 N -0.219 5.219 29 C -0.166 4.166 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.106 0.894 33 H 0.059 0.941 34 H 0.106 0.894 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.180 0.820 43 H 0.191 0.809 44 H 0.063 0.937 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.508 -26.751 -2.887 26.948 hybrid contribution 0.471 0.751 -0.491 1.013 sum -1.037 -25.999 -3.377 26.238 Atomic orbital electron populations 1.69688 1.05847 1.25156 1.58632 1.25427 0.96601 1.00205 1.03448 0.85175 0.77187 0.79279 0.77818 1.20974 1.21557 1.20838 1.19265 0.90467 0.83645 1.42177 0.91211 1.46706 1.03036 0.99434 1.84809 1.23617 0.85838 0.95348 0.91758 0.86406 1.22952 0.96952 0.97999 0.98616 1.22818 0.96506 0.99358 0.96896 1.23319 0.95795 0.84805 0.95180 0.91700 1.22050 0.97038 0.79451 0.97617 0.92947 1.46017 1.23278 1.05259 1.60670 1.21300 0.82525 0.89777 0.76750 1.90688 1.29091 1.81771 1.45492 1.21491 1.00734 0.88125 1.05144 1.20181 0.98179 0.87991 1.02507 1.21256 0.95540 0.96349 0.89145 1.22246 1.02136 0.94962 1.00332 1.21989 0.94287 0.95257 0.98695 1.22492 1.01110 1.02640 0.93395 1.23218 0.94846 0.88088 1.00908 1.67437 1.12637 1.16810 1.25049 1.23134 0.95563 0.98224 0.99707 0.94122 0.94688 0.89367 0.94119 0.89373 0.74813 0.86905 0.87087 0.91218 0.89565 0.83473 0.82174 0.82047 0.80884 0.93672 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.47 10.48 21.65 0.23 -55.24 16 2 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 3 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 6 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.23 -13.09 10.59 84.03 0.89 -12.20 16 8 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.62 -31.96 2.99 -615.27 -1.84 -33.80 16 10 C 0.14 6.37 4.69 46.22 0.22 6.59 16 11 H 0.12 6.25 5.57 -2.39 -0.01 6.24 16 12 C -0.13 -4.67 6.44 32.21 0.21 -4.46 16 13 C -0.12 -4.16 6.31 32.21 0.20 -3.96 16 14 C 0.12 5.03 5.35 46.23 0.25 5.28 16 15 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 16 C 0.15 5.44 3.14 46.61 0.15 5.59 16 17 H 0.05 2.30 7.58 -2.39 -0.02 2.28 16 18 N -0.70 -19.08 3.71 -434.90 -1.61 -20.70 16 19 C 0.51 14.47 7.83 87.66 0.69 15.16 16 20 O -0.59 -22.51 15.64 -3.02 -0.05 -22.56 16 21 C -0.11 -2.28 5.56 29.85 0.17 -2.11 16 22 C -0.05 -1.06 4.90 29.84 0.15 -0.91 16 23 C 0.11 2.18 6.18 42.55 0.26 2.44 16 24 C -0.18 -2.60 9.71 22.36 0.22 -2.38 16 25 C -0.08 -0.83 10.18 22.47 0.23 -0.60 16 26 C -0.18 -1.83 10.11 22.36 0.23 -1.60 16 27 C 0.09 1.23 11.18 84.67 0.95 2.18 16 28 N -0.51 -10.15 9.88 -183.89 -1.82 -11.97 16 29 C -0.13 -4.71 6.20 32.21 0.20 -4.51 16 30 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 31 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.09 2.51 7.82 -2.39 -0.02 2.49 16 33 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.09 2.49 6.40 -2.38 -0.02 2.48 16 35 H 0.41 8.31 7.92 -92.71 -0.73 7.57 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.11 2.07 7.95 -2.39 -0.02 2.05 16 38 H 0.07 1.75 8.10 -2.38 -0.02 1.73 16 39 H 0.09 1.77 7.83 -2.38 -0.02 1.75 16 40 H 0.15 1.67 7.95 -2.91 -0.02 1.65 16 41 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 42 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 43 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 44 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 45 H 0.10 2.74 7.38 -2.39 -0.02 2.73 16 Total: -1.00 -74.17 362.96 2.66 -71.51 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.26 Total: 22.59 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 5.46 Total: 1.29 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -5.04 Total: -121.71 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -74.17 2.66 -71.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109589965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.121 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds