Wall clock time and date at job start Tue Mar 31 2020 10:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48506 * 109.47399 * 269.99896 * 3 2 1 5 5 H 1.48505 * 109.47222 * 30.00052 * 3 2 1 6 6 H 1.48500 * 109.47085 * 149.99853 * 3 2 1 7 7 C 1.37875 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00083 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99945 * 180.02562 * 7 2 1 10 10 N 1.46493 * 109.47427 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00444 * 269.72511 * 10 9 7 12 12 C 1.50694 * 109.47248 * 270.27463 * 11 10 9 13 13 C 1.38674 * 120.42107 * 269.71670 * 12 11 10 14 14 C 1.38630 * 118.42324 * 179.78065 * 13 12 11 15 15 C 1.38227 * 119.15895 * 0.47641 * 14 13 12 16 16 N 1.31856 * 120.76490 * 359.76524 * 15 14 13 17 17 C 1.31882 * 121.72192 * 0.02562 * 16 15 14 18 18 C 1.34784 * 119.99864 * 89.99800 * 10 9 7 19 19 O 1.21279 * 119.99925 * 179.72608 * 18 10 9 20 20 C 1.50700 * 119.99961 * 359.72839 * 18 10 9 21 21 C 1.53975 * 113.57357 * 279.25486 * 20 18 10 22 22 C 1.52967 * 86.68790 * 220.76347 * 21 20 18 23 23 C 1.52957 * 121.32768 * 150.87149 * 22 21 20 24 24 N 1.48165 * 85.83151 * 102.27585 * 23 22 21 25 25 C 1.48162 * 90.99462 * 23.92787 * 24 23 22 26 26 C 1.52805 * 88.18254 * 24.77322 * 22 21 20 27 27 H 0.97005 * 119.99840 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47046 * 59.99400 * 9 7 2 29 29 H 1.08996 * 109.46984 * 299.99998 * 9 7 2 30 30 H 1.09003 * 109.47006 * 30.27410 * 11 10 9 31 31 H 1.09004 * 109.47665 * 150.27102 * 11 10 9 32 32 H 1.08004 * 120.78252 * 0.02602 * 13 12 11 33 33 H 1.08000 * 120.41771 * 180.22745 * 14 13 12 34 34 H 1.08000 * 119.61363 * 179.79507 * 15 14 13 35 35 H 1.08008 * 119.61118 * 179.97438 * 17 16 15 36 36 H 1.09004 * 112.82322 * 50.32835 * 20 18 10 37 37 H 1.08997 * 113.66808 * 335.20415 * 21 20 18 38 38 H 1.09005 * 113.66643 * 106.27517 * 21 20 18 39 39 H 1.09003 * 113.81053 * 216.50193 * 23 22 21 40 40 H 1.08993 * 113.81529 * 348.04267 * 23 22 21 41 41 H 1.00903 * 110.99520 * 136.91863 * 24 23 22 42 42 H 1.09000 * 113.81193 * 221.83849 * 25 24 23 43 43 H 1.09004 * 113.92264 * 90.31518 * 25 24 23 44 44 H 1.09005 * 113.66789 * 220.76417 * 26 22 21 45 45 H 1.09003 * 113.75074 * 89.70092 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5752 0.0022 11 6 4.2494 -3.2630 1.2714 12 6 5.6724 -3.0197 1.7034 13 6 6.6827 -3.8853 1.3123 14 6 7.9777 -3.6195 1.7296 15 6 8.2156 -2.5138 2.5243 16 7 7.2293 -1.7148 2.8811 17 6 5.9862 -1.9346 2.4994 18 6 4.2250 -3.2114 -1.1645 19 8 4.6340 -4.3531 -1.1636 20 6 3.9684 -2.5039 -2.4702 21 6 2.4862 -2.4993 -2.8872 22 6 2.9778 -2.7658 -4.3110 23 6 2.1222 -3.5387 -5.3161 24 7 1.8061 -2.2147 -5.9012 25 6 3.0550 -1.6424 -5.3463 26 6 4.2415 -3.3777 -3.7081 27 1 -0.4850 0.8401 -0.0004 28 1 3.8745 -0.6799 0.8911 29 1 3.8752 -0.6805 -0.8888 30 1 3.5684 -2.8806 2.0318 31 1 4.0866 -4.3331 1.1430 32 1 6.4663 -4.7440 0.6940 33 1 8.7898 -4.2703 1.4408 34 1 9.2212 -2.3016 2.8563 35 1 5.2044 -1.2581 2.8120 36 1 4.4377 -1.5212 -2.5180 37 1 1.9096 -3.3209 -2.4623 38 1 2.0003 -1.5312 -2.7651 39 1 2.6977 -4.1862 -5.9777 40 1 1.2631 -4.0392 -4.8697 41 1 1.8400 -2.2475 -6.9092 42 1 2.9324 -0.6452 -4.9238 43 1 3.9119 -1.7190 -6.0157 44 1 5.1543 -3.1095 -4.2402 45 1 4.1622 -4.4475 -3.5148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157720380.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:05 Heat of formation + Delta-G solvation = 41.000187 kcal Electronic energy + Delta-G solvation = -26879.468596 eV Core-core repulsion = 23283.931007 eV Total energy + Delta-G solvation = -3595.537589 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.99409 -41.16566 -40.05546 -36.99060 -36.34479 -34.71041 -33.59660 -32.60369 -29.92251 -28.51145 -27.06126 -26.69260 -26.63734 -24.73956 -24.25606 -23.79771 -22.46240 -19.70436 -19.26731 -18.84258 -18.30713 -17.94413 -17.31189 -17.16398 -16.99718 -16.63518 -16.08218 -16.02271 -15.54612 -15.38088 -14.71635 -14.60449 -14.51374 -14.19821 -14.10079 -13.89363 -13.74047 -13.71938 -13.34465 -13.08795 -12.85488 -12.66371 -12.59626 -12.46592 -12.35589 -12.03665 -11.67256 -11.54468 -11.26387 -11.16831 -10.84528 -10.73682 -10.50682 -10.47127 -9.96044 -9.78102 -9.46534 -8.25082 -6.29565 0.10927 0.32203 1.38114 1.41529 1.48453 1.71579 2.27402 2.35499 2.93513 3.08907 3.11080 3.37277 3.51743 3.53452 3.62973 3.80124 3.85435 3.91842 4.06648 4.08947 4.15425 4.29086 4.39653 4.42696 4.48459 4.65644 4.70742 4.72732 4.73414 4.81541 4.84773 4.84931 4.89763 4.93332 4.98358 5.19288 5.19530 5.25311 5.33224 5.36277 5.41578 5.47988 5.65704 5.76581 6.22280 6.44037 6.60214 6.75441 6.99667 7.26304 7.37231 8.90765 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.005439 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.774015 B = 5146.913269 C = 7071.002375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.925 3.075 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.243 1.243 7 C -0.520 4.520 8 H 0.035 0.965 9 C 0.221 3.779 10 N -0.589 5.589 11 C 0.160 3.840 12 C -0.154 4.154 13 C -0.064 4.064 14 C -0.168 4.168 15 C 0.090 3.910 16 N -0.509 5.509 17 C 0.099 3.901 18 C 0.525 3.475 19 O -0.582 6.582 20 C -0.129 4.129 21 C -0.070 4.070 22 C -0.113 4.113 23 C 0.024 3.976 24 N -0.652 5.652 25 C 0.035 3.965 26 C -0.088 4.088 27 H 0.266 0.734 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.134 0.866 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.153 0.847 36 H 0.113 0.887 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.328 0.672 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.800 -5.024 -5.821 16.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.172 4.172 3 Si 0.748 3.252 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.559 4.559 8 H 0.054 0.946 9 C 0.099 3.901 10 N -0.318 5.318 11 C 0.037 3.963 12 C -0.158 4.158 13 C -0.090 4.090 14 C -0.187 4.187 15 C -0.067 4.067 16 N -0.218 5.218 17 C -0.058 4.058 18 C 0.315 3.685 19 O -0.464 6.464 20 C -0.149 4.149 21 C -0.108 4.108 22 C -0.113 4.113 23 C -0.106 4.106 24 N -0.278 5.278 25 C -0.095 4.095 26 C -0.126 4.126 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.183 0.817 34 H 0.203 0.797 35 H 0.170 0.830 36 H 0.131 0.869 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.142 0.858 42 H 0.095 0.905 43 H 0.117 0.883 44 H 0.111 0.889 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 14.352 -4.421 -4.826 15.774 hybrid contribution -0.173 -0.182 -0.644 0.691 sum 14.179 -4.603 -5.470 15.879 Atomic orbital electron populations 1.70035 1.08128 1.27966 1.51685 1.25578 0.95201 1.02281 0.94133 0.86055 0.79942 0.79674 0.79480 1.18926 1.21402 1.16606 1.21331 0.90619 0.93067 1.50895 0.94649 1.19592 0.93332 0.79084 0.98066 1.47970 1.63302 1.15470 1.05014 1.20157 0.91765 0.98299 0.86122 1.21233 0.97324 0.97406 0.99789 1.21760 0.92941 0.98374 0.95974 1.22465 0.97520 0.99623 0.99116 1.23338 0.99103 0.90436 0.93786 1.67727 1.00741 1.30503 1.22861 1.22761 0.94009 0.94989 0.94027 1.20762 0.75665 0.86048 0.86029 1.90534 1.48833 1.18973 1.88058 1.22708 0.99588 1.00822 0.91818 1.22181 0.93524 1.01458 0.93602 1.22897 0.96795 0.97923 0.93732 1.23552 0.98480 0.92465 0.96095 1.66887 1.35307 1.11708 1.13892 1.23491 0.92771 0.97956 0.95280 1.22606 0.97542 0.99294 0.93161 0.92532 0.94269 0.94238 0.89359 0.90110 0.84815 0.81668 0.79699 0.82961 0.86900 0.92439 0.92178 0.88773 0.90846 0.85799 0.90505 0.88316 0.88924 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.12 13.96 21.45 0.30 -54.83 16 2 C 0.03 1.45 5.47 84.65 0.46 1.91 16 3 Si 0.92 40.07 27.47 68.60 1.88 41.95 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 7 C -0.52 -26.70 8.63 25.60 0.22 -26.48 16 8 H 0.04 2.10 8.06 -2.91 -0.02 2.07 16 9 C 0.22 9.31 4.01 85.64 0.34 9.65 16 10 N -0.59 -22.93 2.44 -830.53 -2.03 -24.96 16 11 C 0.16 5.58 5.55 85.63 0.48 6.06 16 12 C -0.15 -4.78 5.48 -19.78 -0.11 -4.89 16 13 C -0.06 -1.76 9.86 22.47 0.22 -1.54 16 14 C -0.17 -3.65 10.11 22.36 0.23 -3.42 16 15 C 0.09 2.06 11.18 84.69 0.95 3.00 16 16 N -0.51 -14.90 10.36 -195.84 -2.03 -16.93 16 17 C 0.10 3.04 10.86 84.67 0.92 3.96 16 18 C 0.53 20.16 7.19 87.66 0.63 20.79 16 19 O -0.58 -23.51 15.14 -3.03 -0.05 -23.56 16 20 C -0.13 -4.33 2.93 -10.89 -0.03 -4.36 16 21 C -0.07 -2.58 6.42 30.91 0.20 -2.38 16 22 C -0.11 -3.14 1.26 -52.25 -0.07 -3.21 16 23 C 0.02 0.59 8.68 86.04 0.75 1.33 16 24 N -0.65 -16.50 8.53 -538.41 -4.59 -21.09 16 25 C 0.03 0.83 8.67 86.05 0.75 1.58 16 26 C -0.09 -2.40 7.18 30.86 0.22 -2.17 16 27 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 28 H 0.04 1.61 7.13 -2.39 -0.02 1.60 16 29 H 0.04 1.60 5.68 -2.39 -0.01 1.59 16 30 H 0.09 3.08 8.03 -2.39 -0.02 3.06 16 31 H 0.08 2.86 7.37 -2.38 -0.02 2.84 16 32 H 0.13 3.79 7.71 -2.91 -0.02 3.76 16 33 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 34 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.15 4.61 8.06 -2.91 -0.02 4.58 16 36 H 0.11 3.60 7.02 -2.39 -0.02 3.58 16 37 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 38 H 0.06 2.60 7.78 -2.38 -0.02 2.58 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 41 H 0.33 6.35 8.92 -89.69 -0.80 5.55 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 44 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.09 2.54 7.43 -2.39 -0.02 2.52 16 Total: -1.00 -65.89 368.55 -0.21 -66.11 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.14 Total: 33.48 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: 6.15 Total: -0.17 kcal Atomic # 7 Polarization: -109.46 SS G_CDS: -8.35 Total: -117.81 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 40.07 SS G_CDS: 1.88 Total: 41.95 kcal Total: -65.89 -0.21 -66.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157720380.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.107 kcal (2) G-P(sol) polarization free energy of solvation -65.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds