Wall clock time and date at job start Tue Mar 31 2020 11:19:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30749 * 1
3 3 Si 1.86797 * 120.00005 * 2 1
4 4 H 1.48495 * 109.47218 * 239.99803 * 3 2 1
5 5 H 1.48498 * 109.46991 * 359.97438 * 3 2 1
6 6 H 1.48502 * 109.47386 * 119.99813 * 3 2 1
7 7 C 1.40023 * 120.00000 * 179.97438 * 2 1 3
8 8 H 1.08003 * 119.99989 * 197.25585 * 7 2 1
9 9 C 1.41558 * 120.00070 * 17.25399 * 7 2 1
10 10 C 1.41186 * 120.99500 * 203.15633 * 9 7 2
11 11 C 1.36555 * 119.14502 * 180.02562 * 10 9 7
12 12 N 1.32089 * 121.26979 * 359.72699 * 11 10 9
13 13 C 1.32533 * 122.21831 * 0.56833 * 12 11 10
14 14 N 1.39075 * 119.66126 * 179.70788 * 13 12 11
15 15 C 1.46852 * 110.99824 * 359.72851 * 14 13 12
16 16 C 1.53037 * 109.51687 * 174.18033 * 15 14 13
17 17 C 1.53161 * 109.24753 * 59.23440 * 16 15 14
18 18 C 1.53246 * 109.49750 * 182.69302 * 17 16 15
19 19 C 1.53347 * 108.27093 * 289.02568 * 18 17 16
20 20 C 1.52923 * 108.67202 * 292.27694 * 19 18 17
21 21 N 1.45749 * 110.50189 * 50.68764 * 20 19 18
22 22 C 1.33350 * 124.12088 * 340.98227 * 21 20 19
23 23 O 1.21275 * 118.25027 * 182.25096 * 22 21 20
24 24 C 1.53139 * 109.10347 * 302.21630 * 17 16 15
25 25 C 1.46837 * 111.00117 * 235.49036 * 14 13 12
26 26 C 1.38749 * 120.68277 * 359.43191 * 13 12 11
27 27 H 0.96998 * 119.99657 * 0.02562 * 1 2 3
28 28 H 1.07997 * 120.42632 * 359.97438 * 10 9 7
29 29 H 1.08006 * 119.36530 * 179.97438 * 11 10 9
30 30 H 1.08998 * 109.46374 * 54.17004 * 15 14 13
31 31 H 1.09001 * 109.45676 * 294.18752 * 15 14 13
32 32 H 1.09000 * 109.51232 * 299.30323 * 16 15 14
33 33 H 1.09003 * 109.51153 * 179.16942 * 16 15 14
34 34 H 1.09001 * 109.87211 * 169.26219 * 18 17 16
35 35 H 1.09001 * 109.62088 * 48.63784 * 18 17 16
36 36 H 1.09000 * 109.60297 * 172.52330 * 19 18 17
37 37 H 1.09001 * 109.60291 * 52.03192 * 19 18 17
38 38 H 1.09004 * 109.26685 * 290.42829 * 20 19 18
39 39 H 1.08999 * 109.24054 * 170.93533 * 20 19 18
40 40 H 0.96993 * 117.94191 * 161.00510 * 21 20 19
41 41 H 1.09001 * 109.51137 * 177.69367 * 24 17 16
42 42 H 1.09000 * 109.50963 * 297.83312 * 24 17 16
43 43 H 1.08999 * 109.45926 * 305.82014 * 25 14 13
44 44 H 1.08997 * 109.46412 * 65.80002 * 25 14 13
45 45 H 1.07997 * 120.66384 * 180.29425 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3075 0.0000 0.0000
3 14 2.2415 1.6177 0.0000
4 1 3.0952 1.6964 -1.2124
5 1 1.2765 2.7464 -0.0006
6 1 3.0952 1.6965 1.2125
7 6 2.0076 -1.2126 0.0005
8 1 3.0512 -1.2336 0.2780
9 6 1.3476 -2.4112 -0.3625
10 6 1.8284 -3.6659 0.0708
11 6 1.1625 -4.7982 -0.3023
12 7 0.0779 -4.7396 -1.0539
13 6 -0.4154 -3.5910 -1.4943
14 7 -1.5575 -3.5916 -2.2878
15 6 -2.0399 -4.9599 -2.5148
16 6 -3.3725 -4.9143 -3.2659
17 6 -3.1737 -4.1953 -4.6036
18 6 -4.5183 -4.0869 -5.3307
19 6 -4.9179 -5.4864 -5.8137
20 6 -3.9425 -5.9241 -6.9071
21 7 -2.5655 -5.7523 -6.4613
22 6 -2.1996 -4.9650 -5.4492
23 8 -1.0177 -4.8691 -5.1948
24 6 -2.6272 -2.7892 -4.3405
25 6 -1.3161 -2.8956 -3.5581
26 6 0.1925 -2.3875 -1.1670
27 1 -0.4849 0.8401 -0.0004
28 1 2.7119 -3.7294 0.6887
29 1 1.5274 -5.7600 0.0269
30 1 -2.1803 -5.4592 -1.5561
31 1 -1.3080 -5.5094 -3.1068
32 1 -4.1086 -4.3756 -2.6691
33 1 -3.7232 -5.9303 -3.4473
34 1 -4.4245 -3.4166 -6.1852
35 1 -5.2752 -3.7050 -4.6456
36 1 -5.9304 -5.4590 -6.2165
37 1 -4.8720 -6.1877 -4.9805
38 1 -4.1093 -5.3216 -7.8001
39 1 -4.1157 -6.9738 -7.1438
40 1 -1.8716 -6.2413 -6.9305
41 1 -2.4445 -2.2860 -5.2900
42 1 -3.3525 -2.2195 -3.7595
43 1 -0.9311 -1.8960 -3.3569
44 1 -0.5873 -3.4542 -4.1454
45 1 -0.2124 -1.4514 -1.5221
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001166820470.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:09
Heat of formation + Delta-G solvation = 1.039196 kcal
Electronic energy + Delta-G solvation = -27304.903033 eV
Core-core repulsion = 23707.632605 eV
Total energy + Delta-G solvation = -3597.270428 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-41.19926 -38.76895 -36.89267 -36.62301 -34.24764 -33.59387 -31.06596 -30.80123
-30.18046 -28.70443 -26.56843 -25.86692 -23.57649 -23.27181 -22.65792 -21.20326
-20.98949 -19.83332 -18.30842 -17.54109 -17.28329 -15.83821 -15.77456 -15.52206
-15.19858 -14.74409 -14.44208 -14.25124 -14.00548 -13.92757 -13.74986 -13.45167
-13.10348 -12.92547 -12.53554 -12.31920 -12.09534 -11.87875 -11.80932 -11.52455
-11.47212 -11.27084 -11.23907 -11.11039 -10.75308 -10.72302 -10.24056 -10.11568
-9.98317 -9.81904 -9.44761 -9.28533 -9.10789 -8.37774 -7.90535 -7.81224
-6.76878 -6.62451 -4.48201 2.73156 2.85150 2.97836 3.07212 3.10191
3.20010 3.35155 3.93074 4.37160 4.47189 4.48787 4.60806 4.63910
4.80946 5.01500 5.05839 5.12099 5.32490 5.43911 5.48042 5.60346
5.73075 5.77167 5.83279 5.86687 5.89195 5.97271 6.05989 6.10651
6.19362 6.42391 6.49239 6.66591 6.73131 6.77059 6.86562 6.96154
7.04964 7.23176 7.32399 7.33281 7.60147 7.75819 7.92829 8.04693
8.33761 8.37910 8.73498 8.87516 8.92655 9.75797 10.17996
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.020635 B = 0.003754 C = 0.003452
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.608957 B = 7456.255339 C = 8108.968441
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.780 5.780
2 C 0.078 3.922
3 Si 0.909 3.091
4 H -0.263 1.263
5 H -0.278 1.278
6 H -0.265 1.265
7 C -0.458 4.458
8 H 0.079 0.921
9 C 0.138 3.862
10 C -0.287 4.287
11 C 0.116 3.884
12 N -0.602 5.602
13 C 0.298 3.702
14 N -0.470 5.470
15 C 0.068 3.932
16 C -0.101 4.101
17 C -0.071 4.071
18 C -0.115 4.115
19 C -0.140 4.140
20 C 0.112 3.888
21 N -0.726 5.726
22 C 0.524 3.476
23 O -0.529 6.529
24 C -0.092 4.092
25 C 0.040 3.960
26 C -0.224 4.224
27 H 0.282 0.718
28 H 0.097 0.903
29 H 0.116 0.884
30 H 0.078 0.922
31 H 0.052 0.948
32 H 0.081 0.919
33 H 0.064 0.936
34 H 0.069 0.931
35 H 0.079 0.921
36 H 0.082 0.918
37 H 0.076 0.924
38 H 0.062 0.938
39 H 0.073 0.927
40 H 0.396 0.604
41 H 0.064 0.936
42 H 0.079 0.921
43 H 0.075 0.925
44 H 0.083 0.917
45 H 0.129 0.871
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.812 -6.535 -13.129 18.831
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.405 5.405
2 C -0.141 4.141
3 Si 0.733 3.267
4 H -0.188 1.188
5 H -0.202 1.202
6 H -0.190 1.190
7 C -0.489 4.489
8 H 0.097 0.903
9 C 0.130 3.870
10 C -0.311 4.311
11 C -0.038 4.038
12 N -0.322 5.322
13 C 0.072 3.928
14 N -0.188 5.188
15 C -0.060 4.060
16 C -0.139 4.139
17 C -0.074 4.074
18 C -0.152 4.152
19 C -0.178 4.178
20 C -0.013 4.013
21 N -0.379 5.379
22 C 0.311 3.689
23 O -0.405 6.405
24 C -0.130 4.130
25 C -0.086 4.086
26 C -0.248 4.248
27 H 0.093 0.907
28 H 0.116 0.884
29 H 0.134 0.866
30 H 0.096 0.904
31 H 0.071 0.929
32 H 0.099 0.901
33 H 0.083 0.917
34 H 0.088 0.912
35 H 0.097 0.903
36 H 0.101 0.899
37 H 0.094 0.906
38 H 0.080 0.920
39 H 0.091 0.909
40 H 0.231 0.769
41 H 0.082 0.918
42 H 0.097 0.903
43 H 0.093 0.907
44 H 0.101 0.899
45 H 0.147 0.853
Dipole moment (debyes) X Y Z Total
from point charges -12.430 -6.721 -12.880 19.120
hybrid contribution 1.447 0.921 -0.254 1.734
sum -10.983 -5.800 -13.134 18.077
Atomic orbital electron populations
1.69810 1.07575 1.29393 1.33722 1.25949 0.94732 1.01334 0.92118
0.86363 0.80175 0.80144 0.80025 1.18773 1.20249 1.18952 1.19543
0.97921 0.90930 1.40481 0.90254 1.17676 0.90352 0.92107 0.86890
1.21537 1.05350 0.94049 1.10170 1.21309 0.91337 0.96579 0.94579
1.67176 1.16139 1.28311 1.20605 1.19378 0.88720 0.90060 0.94605
1.59241 1.27983 1.16524 1.15079 1.21822 0.94067 0.89991 1.00097
1.21706 0.99519 0.99454 0.93185 1.20770 0.93884 0.97145 0.95599
1.21821 0.96257 0.96741 1.00426 1.21940 0.98986 0.97922 0.98913
1.21341 0.81484 1.01274 0.97193 1.45554 1.09475 1.47897 1.34994
1.20199 0.89822 0.79002 0.79855 1.90683 1.18597 1.63063 1.68175
1.21529 0.98432 0.93123 0.99931 1.22590 0.96988 0.99892 0.89156
1.21636 1.01053 0.96323 1.05834 0.90698 0.88448 0.86601 0.90373
0.92938 0.90084 0.91736 0.91207 0.90250 0.89914 0.90558 0.91970
0.90878 0.76887 0.91762 0.90251 0.90665 0.89921 0.85322
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -20.44 10.91 55.55 0.61 -19.84 16
2 C 0.08 2.00 5.20 -17.34 -0.09 1.91 16
3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16
4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16
5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16
6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16
7 C -0.46 -12.44 9.12 -37.65 -0.34 -12.78 16
8 H 0.08 2.06 7.90 -52.48 -0.41 1.64 16
9 C 0.14 3.86 5.61 -106.55 -0.60 3.26 16
10 C -0.29 -7.44 9.85 -39.07 -0.38 -7.83 16
11 C 0.12 2.87 11.10 -18.05 -0.20 2.67 16
12 N -0.60 -15.53 8.65 -12.82 -0.11 -15.64 16
13 C 0.30 7.70 6.41 -154.98 -0.99 6.70 16
14 N -0.47 -10.34 4.68 -173.30 -0.81 -11.15 16
15 C 0.07 1.32 4.40 -3.83 -0.02 1.30 16
16 C -0.10 -1.43 4.65 -26.63 -0.12 -1.55 16
17 C -0.07 -0.92 0.53 -155.62 -0.08 -1.00 16
18 C -0.11 -1.03 4.77 -26.42 -0.13 -1.15 16
19 C -0.14 -0.96 5.98 -26.59 -0.16 -1.12 16
20 C 0.11 0.76 7.17 -4.49 -0.03 0.72 16
21 N -0.73 -7.59 5.45 -61.38 -0.33 -7.92 16
22 C 0.52 7.55 6.22 -11.86 -0.07 7.47 16
23 O -0.53 -10.09 12.36 5.56 0.07 -10.02 16
24 C -0.09 -1.39 4.82 -26.63 -0.13 -1.51 16
25 C 0.04 0.80 4.98 -3.83 -0.02 0.78 16
26 C -0.22 -6.15 7.88 -38.43 -0.30 -6.46 16
27 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16
28 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16
29 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16
30 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16
31 H 0.05 1.14 6.20 -51.93 -0.32 0.82 16
32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16
33 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16
34 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16
35 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16
36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16
37 H 0.08 0.58 6.48 -51.93 -0.34 0.24 16
38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
40 H 0.40 3.83 8.80 -40.82 -0.36 3.47 16
41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16
43 H 0.07 1.61 6.67 -51.93 -0.35 1.26 16
44 H 0.08 1.85 5.03 -51.93 -0.26 1.59 16
45 H 0.13 3.61 5.25 -52.49 -0.28 3.34 16
LS Contribution 341.80 15.07 5.15 5.15
Total: -1.00 -32.40 341.80 -10.55 -42.96
By element:
Atomic # 1 Polarization: 17.68 SS G_CDS: -6.42 Total: 11.26 kcal
Atomic # 6 Polarization: -4.91 SS G_CDS: -3.67 Total: -8.59 kcal
Atomic # 7 Polarization: -53.90 SS G_CDS: -0.65 Total: -54.55 kcal
Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal
Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal
Total LS contribution 5.15 Total: 5.15 kcal
Total: -32.40 -10.55 -42.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001166820470.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.995 kcal
(2) G-P(sol) polarization free energy of solvation -32.402 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal
(6) G-S(sol) free energy of system = (1) + (5) 1.039 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds