Wall clock time and date at job start Tue Mar 31 2020 11:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48495 * 109.47218 * 239.99803 * 3 2 1 5 5 H 1.48498 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47386 * 119.99813 * 3 2 1 7 7 C 1.40023 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99989 * 197.25585 * 7 2 1 9 9 C 1.41558 * 120.00070 * 17.25399 * 7 2 1 10 10 C 1.41186 * 120.99500 * 203.15633 * 9 7 2 11 11 C 1.36555 * 119.14502 * 180.02562 * 10 9 7 12 12 N 1.32089 * 121.26979 * 359.72699 * 11 10 9 13 13 C 1.32533 * 122.21831 * 0.56833 * 12 11 10 14 14 N 1.39075 * 119.66126 * 179.70788 * 13 12 11 15 15 C 1.46852 * 110.99824 * 359.72851 * 14 13 12 16 16 C 1.53037 * 109.51687 * 174.18033 * 15 14 13 17 17 C 1.53161 * 109.24753 * 59.23440 * 16 15 14 18 18 C 1.53246 * 109.49750 * 182.69302 * 17 16 15 19 19 C 1.53347 * 108.27093 * 289.02568 * 18 17 16 20 20 C 1.52923 * 108.67202 * 292.27694 * 19 18 17 21 21 N 1.45749 * 110.50189 * 50.68764 * 20 19 18 22 22 C 1.33350 * 124.12088 * 340.98227 * 21 20 19 23 23 O 1.21275 * 118.25027 * 182.25096 * 22 21 20 24 24 C 1.53139 * 109.10347 * 302.21630 * 17 16 15 25 25 C 1.46837 * 111.00117 * 235.49036 * 14 13 12 26 26 C 1.38749 * 120.68277 * 359.43191 * 13 12 11 27 27 H 0.96998 * 119.99657 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.42632 * 359.97438 * 10 9 7 29 29 H 1.08006 * 119.36530 * 179.97438 * 11 10 9 30 30 H 1.08998 * 109.46374 * 54.17004 * 15 14 13 31 31 H 1.09001 * 109.45676 * 294.18752 * 15 14 13 32 32 H 1.09000 * 109.51232 * 299.30323 * 16 15 14 33 33 H 1.09003 * 109.51153 * 179.16942 * 16 15 14 34 34 H 1.09001 * 109.87211 * 169.26219 * 18 17 16 35 35 H 1.09001 * 109.62088 * 48.63784 * 18 17 16 36 36 H 1.09000 * 109.60297 * 172.52330 * 19 18 17 37 37 H 1.09001 * 109.60291 * 52.03192 * 19 18 17 38 38 H 1.09004 * 109.26685 * 290.42829 * 20 19 18 39 39 H 1.08999 * 109.24054 * 170.93533 * 20 19 18 40 40 H 0.96993 * 117.94191 * 161.00510 * 21 20 19 41 41 H 1.09001 * 109.51137 * 177.69367 * 24 17 16 42 42 H 1.09000 * 109.50963 * 297.83312 * 24 17 16 43 43 H 1.08999 * 109.45926 * 305.82014 * 25 14 13 44 44 H 1.08997 * 109.46412 * 65.80002 * 25 14 13 45 45 H 1.07997 * 120.66384 * 180.29425 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0512 -1.2336 0.2780 9 6 1.3476 -2.4112 -0.3625 10 6 1.8284 -3.6659 0.0708 11 6 1.1625 -4.7982 -0.3023 12 7 0.0779 -4.7396 -1.0539 13 6 -0.4154 -3.5910 -1.4943 14 7 -1.5575 -3.5916 -2.2878 15 6 -2.0399 -4.9599 -2.5148 16 6 -3.3725 -4.9143 -3.2659 17 6 -3.1737 -4.1953 -4.6036 18 6 -4.5183 -4.0869 -5.3307 19 6 -4.9179 -5.4864 -5.8137 20 6 -3.9425 -5.9241 -6.9071 21 7 -2.5655 -5.7523 -6.4613 22 6 -2.1996 -4.9650 -5.4492 23 8 -1.0177 -4.8691 -5.1948 24 6 -2.6272 -2.7892 -4.3405 25 6 -1.3161 -2.8956 -3.5581 26 6 0.1925 -2.3875 -1.1670 27 1 -0.4849 0.8401 -0.0004 28 1 2.7119 -3.7294 0.6887 29 1 1.5274 -5.7600 0.0269 30 1 -2.1803 -5.4592 -1.5561 31 1 -1.3080 -5.5094 -3.1068 32 1 -4.1086 -4.3756 -2.6691 33 1 -3.7232 -5.9303 -3.4473 34 1 -4.4245 -3.4166 -6.1852 35 1 -5.2752 -3.7050 -4.6456 36 1 -5.9304 -5.4590 -6.2165 37 1 -4.8720 -6.1877 -4.9805 38 1 -4.1093 -5.3216 -7.8001 39 1 -4.1157 -6.9738 -7.1438 40 1 -1.8716 -6.2413 -6.9305 41 1 -2.4445 -2.2860 -5.2900 42 1 -3.3525 -2.2195 -3.7595 43 1 -0.9311 -1.8960 -3.3569 44 1 -0.5873 -3.4542 -4.1454 45 1 -0.2124 -1.4514 -1.5221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166820470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:09 Heat of formation + Delta-G solvation = 1.039196 kcal Electronic energy + Delta-G solvation = -27304.903033 eV Core-core repulsion = 23707.632605 eV Total energy + Delta-G solvation = -3597.270428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19926 -38.76895 -36.89267 -36.62301 -34.24764 -33.59387 -31.06596 -30.80123 -30.18046 -28.70443 -26.56843 -25.86692 -23.57649 -23.27181 -22.65792 -21.20326 -20.98949 -19.83332 -18.30842 -17.54109 -17.28329 -15.83821 -15.77456 -15.52206 -15.19858 -14.74409 -14.44208 -14.25124 -14.00548 -13.92757 -13.74986 -13.45167 -13.10348 -12.92547 -12.53554 -12.31920 -12.09534 -11.87875 -11.80932 -11.52455 -11.47212 -11.27084 -11.23907 -11.11039 -10.75308 -10.72302 -10.24056 -10.11568 -9.98317 -9.81904 -9.44761 -9.28533 -9.10789 -8.37774 -7.90535 -7.81224 -6.76878 -6.62451 -4.48201 2.73156 2.85150 2.97836 3.07212 3.10191 3.20010 3.35155 3.93074 4.37160 4.47189 4.48787 4.60806 4.63910 4.80946 5.01500 5.05839 5.12099 5.32490 5.43911 5.48042 5.60346 5.73075 5.77167 5.83279 5.86687 5.89195 5.97271 6.05989 6.10651 6.19362 6.42391 6.49239 6.66591 6.73131 6.77059 6.86562 6.96154 7.04964 7.23176 7.32399 7.33281 7.60147 7.75819 7.92829 8.04693 8.33761 8.37910 8.73498 8.87516 8.92655 9.75797 10.17996 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.003754 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.608957 B = 7456.255339 C = 8108.968441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.079 0.921 9 C 0.138 3.862 10 C -0.287 4.287 11 C 0.116 3.884 12 N -0.602 5.602 13 C 0.298 3.702 14 N -0.470 5.470 15 C 0.068 3.932 16 C -0.101 4.101 17 C -0.071 4.071 18 C -0.115 4.115 19 C -0.140 4.140 20 C 0.112 3.888 21 N -0.726 5.726 22 C 0.524 3.476 23 O -0.529 6.529 24 C -0.092 4.092 25 C 0.040 3.960 26 C -0.224 4.224 27 H 0.282 0.718 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.396 0.604 41 H 0.064 0.936 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.812 -6.535 -13.129 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.141 4.141 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.130 3.870 10 C -0.311 4.311 11 C -0.038 4.038 12 N -0.322 5.322 13 C 0.072 3.928 14 N -0.188 5.188 15 C -0.060 4.060 16 C -0.139 4.139 17 C -0.074 4.074 18 C -0.152 4.152 19 C -0.178 4.178 20 C -0.013 4.013 21 N -0.379 5.379 22 C 0.311 3.689 23 O -0.405 6.405 24 C -0.130 4.130 25 C -0.086 4.086 26 C -0.248 4.248 27 H 0.093 0.907 28 H 0.116 0.884 29 H 0.134 0.866 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.231 0.769 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.430 -6.721 -12.880 19.120 hybrid contribution 1.447 0.921 -0.254 1.734 sum -10.983 -5.800 -13.134 18.077 Atomic orbital electron populations 1.69810 1.07575 1.29393 1.33722 1.25949 0.94732 1.01334 0.92118 0.86363 0.80175 0.80144 0.80025 1.18773 1.20249 1.18952 1.19543 0.97921 0.90930 1.40481 0.90254 1.17676 0.90352 0.92107 0.86890 1.21537 1.05350 0.94049 1.10170 1.21309 0.91337 0.96579 0.94579 1.67176 1.16139 1.28311 1.20605 1.19378 0.88720 0.90060 0.94605 1.59241 1.27983 1.16524 1.15079 1.21822 0.94067 0.89991 1.00097 1.21706 0.99519 0.99454 0.93185 1.20770 0.93884 0.97145 0.95599 1.21821 0.96257 0.96741 1.00426 1.21940 0.98986 0.97922 0.98913 1.21341 0.81484 1.01274 0.97193 1.45554 1.09475 1.47897 1.34994 1.20199 0.89822 0.79002 0.79855 1.90683 1.18597 1.63063 1.68175 1.21529 0.98432 0.93123 0.99931 1.22590 0.96988 0.99892 0.89156 1.21636 1.01053 0.96323 1.05834 0.90698 0.88448 0.86601 0.90373 0.92938 0.90084 0.91736 0.91207 0.90250 0.89914 0.90558 0.91970 0.90878 0.76887 0.91762 0.90251 0.90665 0.89921 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.44 10.91 55.55 0.61 -19.84 16 2 C 0.08 2.00 5.20 -17.34 -0.09 1.91 16 3 Si 0.91 18.81 29.59 -169.99 -5.03 13.78 16 4 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.44 9.12 -37.65 -0.34 -12.78 16 8 H 0.08 2.06 7.90 -52.48 -0.41 1.64 16 9 C 0.14 3.86 5.61 -106.55 -0.60 3.26 16 10 C -0.29 -7.44 9.85 -39.07 -0.38 -7.83 16 11 C 0.12 2.87 11.10 -18.05 -0.20 2.67 16 12 N -0.60 -15.53 8.65 -12.82 -0.11 -15.64 16 13 C 0.30 7.70 6.41 -154.98 -0.99 6.70 16 14 N -0.47 -10.34 4.68 -173.30 -0.81 -11.15 16 15 C 0.07 1.32 4.40 -3.83 -0.02 1.30 16 16 C -0.10 -1.43 4.65 -26.63 -0.12 -1.55 16 17 C -0.07 -0.92 0.53 -155.62 -0.08 -1.00 16 18 C -0.11 -1.03 4.77 -26.42 -0.13 -1.15 16 19 C -0.14 -0.96 5.98 -26.59 -0.16 -1.12 16 20 C 0.11 0.76 7.17 -4.49 -0.03 0.72 16 21 N -0.73 -7.59 5.45 -61.38 -0.33 -7.92 16 22 C 0.52 7.55 6.22 -11.86 -0.07 7.47 16 23 O -0.53 -10.09 12.36 5.56 0.07 -10.02 16 24 C -0.09 -1.39 4.82 -26.63 -0.13 -1.51 16 25 C 0.04 0.80 4.98 -3.83 -0.02 0.78 16 26 C -0.22 -6.15 7.88 -38.43 -0.30 -6.46 16 27 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 28 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 30 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 31 H 0.05 1.14 6.20 -51.93 -0.32 0.82 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.79 6.68 -51.93 -0.35 0.44 16 34 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 35 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.58 6.48 -51.93 -0.34 0.24 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.40 3.83 8.80 -40.82 -0.36 3.47 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.07 1.61 6.67 -51.93 -0.35 1.26 16 44 H 0.08 1.85 5.03 -51.93 -0.26 1.59 16 45 H 0.13 3.61 5.25 -52.49 -0.28 3.34 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -32.40 341.80 -10.55 -42.96 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -6.42 Total: 11.26 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -3.67 Total: -8.59 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: -0.65 Total: -54.55 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.40 -10.55 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166820470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.995 kcal (2) G-P(sol) polarization free energy of solvation -32.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds