Wall clock time and date at job start Tue Mar 31 2020 11:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30749 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48495 * 109.47218 * 239.99803 * 3 2 1 5 5 H 1.48498 * 109.46991 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47386 * 119.99813 * 3 2 1 7 7 C 1.40023 * 120.00000 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99989 * 197.25585 * 7 2 1 9 9 C 1.41558 * 120.00070 * 17.25399 * 7 2 1 10 10 C 1.41186 * 120.99500 * 203.15633 * 9 7 2 11 11 C 1.36555 * 119.14502 * 180.02562 * 10 9 7 12 12 N 1.32089 * 121.26979 * 359.72699 * 11 10 9 13 13 C 1.32533 * 122.21831 * 0.56833 * 12 11 10 14 14 N 1.39075 * 119.66126 * 179.70788 * 13 12 11 15 15 C 1.46852 * 110.99824 * 359.72851 * 14 13 12 16 16 C 1.53037 * 109.51687 * 174.18033 * 15 14 13 17 17 C 1.53161 * 109.24753 * 59.23440 * 16 15 14 18 18 C 1.53246 * 109.49750 * 182.69302 * 17 16 15 19 19 C 1.53347 * 108.27093 * 289.02568 * 18 17 16 20 20 C 1.52923 * 108.67202 * 292.27694 * 19 18 17 21 21 N 1.45749 * 110.50189 * 50.68764 * 20 19 18 22 22 C 1.33350 * 124.12088 * 340.98227 * 21 20 19 23 23 O 1.21275 * 118.25027 * 182.25096 * 22 21 20 24 24 C 1.53139 * 109.10347 * 302.21630 * 17 16 15 25 25 C 1.46837 * 111.00117 * 235.49036 * 14 13 12 26 26 C 1.38749 * 120.68277 * 359.43191 * 13 12 11 27 27 H 0.96998 * 119.99657 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.42632 * 359.97438 * 10 9 7 29 29 H 1.08006 * 119.36530 * 179.97438 * 11 10 9 30 30 H 1.08998 * 109.46374 * 54.17004 * 15 14 13 31 31 H 1.09001 * 109.45676 * 294.18752 * 15 14 13 32 32 H 1.09000 * 109.51232 * 299.30323 * 16 15 14 33 33 H 1.09003 * 109.51153 * 179.16942 * 16 15 14 34 34 H 1.09001 * 109.87211 * 169.26219 * 18 17 16 35 35 H 1.09001 * 109.62088 * 48.63784 * 18 17 16 36 36 H 1.09000 * 109.60297 * 172.52330 * 19 18 17 37 37 H 1.09001 * 109.60291 * 52.03192 * 19 18 17 38 38 H 1.09004 * 109.26685 * 290.42829 * 20 19 18 39 39 H 1.08999 * 109.24054 * 170.93533 * 20 19 18 40 40 H 0.96993 * 117.94191 * 161.00510 * 21 20 19 41 41 H 1.09001 * 109.51137 * 177.69367 * 24 17 16 42 42 H 1.09000 * 109.50963 * 297.83312 * 24 17 16 43 43 H 1.08999 * 109.45926 * 305.82014 * 25 14 13 44 44 H 1.08997 * 109.46412 * 65.80002 * 25 14 13 45 45 H 1.07997 * 120.66384 * 180.29425 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2765 2.7464 -0.0006 6 1 3.0952 1.6965 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0512 -1.2336 0.2780 9 6 1.3476 -2.4112 -0.3625 10 6 1.8284 -3.6659 0.0708 11 6 1.1625 -4.7982 -0.3023 12 7 0.0779 -4.7396 -1.0539 13 6 -0.4154 -3.5910 -1.4943 14 7 -1.5575 -3.5916 -2.2878 15 6 -2.0399 -4.9599 -2.5148 16 6 -3.3725 -4.9143 -3.2659 17 6 -3.1737 -4.1953 -4.6036 18 6 -4.5183 -4.0869 -5.3307 19 6 -4.9179 -5.4864 -5.8137 20 6 -3.9425 -5.9241 -6.9071 21 7 -2.5655 -5.7523 -6.4613 22 6 -2.1996 -4.9650 -5.4492 23 8 -1.0177 -4.8691 -5.1948 24 6 -2.6272 -2.7892 -4.3405 25 6 -1.3161 -2.8956 -3.5581 26 6 0.1925 -2.3875 -1.1670 27 1 -0.4849 0.8401 -0.0004 28 1 2.7119 -3.7294 0.6887 29 1 1.5274 -5.7600 0.0269 30 1 -2.1803 -5.4592 -1.5561 31 1 -1.3080 -5.5094 -3.1068 32 1 -4.1086 -4.3756 -2.6691 33 1 -3.7232 -5.9303 -3.4473 34 1 -4.4245 -3.4166 -6.1852 35 1 -5.2752 -3.7050 -4.6456 36 1 -5.9304 -5.4590 -6.2165 37 1 -4.8720 -6.1877 -4.9805 38 1 -4.1093 -5.3216 -7.8001 39 1 -4.1157 -6.9738 -7.1438 40 1 -1.8716 -6.2413 -6.9305 41 1 -2.4445 -2.2860 -5.2900 42 1 -3.3525 -2.2195 -3.7595 43 1 -0.9311 -1.8960 -3.3569 44 1 -0.5873 -3.4542 -4.1454 45 1 -0.2124 -1.4514 -1.5221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166820470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:08 Heat of formation + Delta-G solvation = -21.009726 kcal Electronic energy + Delta-G solvation = -27305.859146 eV Core-core repulsion = 23707.632605 eV Total energy + Delta-G solvation = -3598.226541 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.33707 -40.55790 -38.41752 -37.58283 -36.04419 -35.06161 -32.63287 -32.05234 -31.80048 -30.26698 -27.98515 -27.70409 -24.83471 -24.45837 -23.83590 -23.00133 -22.50097 -21.43226 -19.52708 -19.14825 -18.25069 -17.64814 -17.08459 -16.81328 -16.49105 -16.33451 -16.09462 -15.81303 -15.25624 -15.12852 -15.04537 -14.72889 -14.41714 -14.33117 -14.23347 -13.91793 -13.43238 -13.21096 -13.11619 -13.03308 -12.97133 -12.70569 -12.50106 -12.25588 -12.16125 -11.98367 -11.96016 -11.80598 -11.28536 -11.26234 -11.18385 -10.76236 -10.07655 -9.97189 -9.93906 -9.85409 -8.71021 -8.55184 -6.56623 0.90338 1.01159 1.36514 1.49204 1.56675 1.65159 2.17696 2.33964 2.71270 2.98773 3.52850 3.59515 3.63926 3.75973 3.92932 3.99718 4.08002 4.24389 4.30585 4.41619 4.53369 4.55579 4.69237 4.71231 4.71467 4.79210 4.87142 4.90274 4.93903 4.95468 4.98843 5.07540 5.14415 5.16688 5.19281 5.25081 5.32737 5.36005 5.42308 5.57275 5.85054 5.93397 5.98752 6.13986 6.35506 6.39286 6.72175 6.82505 6.88856 7.32608 7.73669 8.25985 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.020635 B = 0.003754 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.608957 B = 7456.255339 C = 8108.968441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.261 1.261 5 H -0.263 1.263 6 H -0.256 1.256 7 C -0.490 4.490 8 H 0.083 0.917 9 C 0.108 3.892 10 C -0.306 4.306 11 C 0.113 3.887 12 N -0.614 5.614 13 C 0.293 3.707 14 N -0.472 5.472 15 C 0.073 3.927 16 C -0.091 4.091 17 C -0.067 4.067 18 C -0.109 4.109 19 C -0.137 4.137 20 C 0.103 3.897 21 N -0.715 5.715 22 C 0.517 3.483 23 O -0.588 6.588 24 C -0.086 4.086 25 C 0.044 3.956 26 C -0.251 4.251 27 H 0.292 0.708 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.060 0.940 31 H 0.026 0.974 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.399 0.601 41 H 0.079 0.921 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.060 0.940 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.178 -6.478 -14.687 21.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.180 1.180 7 C -0.520 4.520 8 H 0.101 0.899 9 C 0.100 3.900 10 C -0.329 4.329 11 C -0.040 4.040 12 N -0.334 5.334 13 C 0.066 3.934 14 N -0.190 5.190 15 C -0.055 4.055 16 C -0.129 4.129 17 C -0.070 4.070 18 C -0.146 4.146 19 C -0.174 4.174 20 C -0.020 4.020 21 N -0.366 5.366 22 C 0.305 3.695 23 O -0.470 6.470 24 C -0.124 4.124 25 C -0.082 4.082 26 C -0.275 4.275 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.169 0.831 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.090 0.910 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.234 0.766 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.078 0.922 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.857 -6.707 -14.475 21.800 hybrid contribution 2.153 0.820 0.201 2.312 sum -12.705 -5.887 -14.274 19.995 Atomic orbital electron populations 1.69869 1.09219 1.31018 1.33186 1.26902 0.95534 1.04787 0.90829 0.85171 0.78787 0.75071 0.80191 1.18563 1.18704 1.17953 1.19874 0.98348 0.91989 1.41794 0.89896 1.18126 0.90984 0.93473 0.87428 1.21757 1.06274 0.93891 1.11027 1.21878 0.90757 0.97861 0.93539 1.67329 1.16736 1.28159 1.21195 1.19775 0.89371 0.89676 0.94537 1.59283 1.26031 1.18128 1.15549 1.21815 0.96267 0.87950 0.99442 1.21671 0.96286 1.01582 0.93355 1.20741 0.96024 0.94999 0.95258 1.21827 0.93443 0.98728 1.00623 1.21990 1.00586 0.96069 0.98791 1.21718 0.79023 1.03421 0.97817 1.45597 1.11529 1.46070 1.33363 1.20482 0.89130 0.79329 0.80585 1.90669 1.20988 1.65247 1.70059 1.21506 0.95739 0.95355 0.99780 1.22543 0.99687 0.97575 0.88408 1.21572 1.02181 0.96392 1.07397 0.89743 0.86962 0.83102 0.92195 0.95543 0.88912 0.89110 0.90095 0.88837 0.86609 0.91021 0.89992 0.88336 0.76594 0.90260 0.89249 0.93339 0.92243 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.57 10.91 21.84 0.24 -43.34 16 2 C 0.04 1.92 5.20 85.29 0.44 2.36 16 3 Si 0.99 38.77 29.59 68.60 2.03 40.80 16 4 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 5 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.49 -27.59 9.12 23.52 0.21 -27.38 16 8 H 0.08 4.44 7.90 -2.91 -0.02 4.41 16 9 C 0.11 6.34 5.61 -21.11 -0.12 6.22 16 10 C -0.31 -16.43 9.85 22.60 0.22 -16.21 16 11 C 0.11 5.75 11.10 84.26 0.94 6.68 16 12 N -0.61 -32.95 8.65 -194.47 -1.68 -34.64 16 13 C 0.29 15.97 6.41 132.91 0.85 16.82 16 14 N -0.47 -21.75 4.68 -702.18 -3.29 -25.03 16 15 C 0.07 2.91 4.40 86.32 0.38 3.29 16 16 C -0.09 -2.47 4.65 30.66 0.14 -2.32 16 17 C -0.07 -1.64 0.53 -52.90 -0.03 -1.66 16 18 C -0.11 -1.51 4.77 30.79 0.15 -1.36 16 19 C -0.14 -1.22 5.98 30.68 0.18 -1.03 16 20 C 0.10 0.95 7.17 86.50 0.62 1.57 16 21 N -0.72 -13.45 5.45 -467.29 -2.55 -16.00 16 22 C 0.52 14.55 6.22 87.72 0.55 15.09 16 23 O -0.59 -23.39 12.36 -3.01 -0.04 -23.43 16 24 C -0.09 -2.56 4.82 30.66 0.15 -2.41 16 25 C 0.04 1.86 4.98 86.33 0.43 2.29 16 26 C -0.25 -14.62 7.88 23.01 0.18 -14.44 16 27 H 0.29 14.11 8.29 -92.71 -0.77 13.34 16 28 H 0.11 5.51 8.06 -2.91 -0.02 5.49 16 29 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 30 H 0.06 2.55 7.70 -2.39 -0.02 2.54 16 31 H 0.03 1.20 6.20 -2.39 -0.01 1.18 16 32 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.09 2.00 6.68 -2.39 -0.02 1.98 16 34 H 0.08 1.00 8.10 -2.39 -0.02 0.98 16 35 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 36 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.07 0.75 6.48 -2.39 -0.02 0.73 16 38 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 40 H 0.40 7.18 8.80 -92.71 -0.82 6.37 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.05 2.24 6.67 -2.39 -0.02 2.23 16 44 H 0.06 2.86 5.03 -2.46 -0.01 2.85 16 45 H 0.11 6.85 5.25 -2.91 -0.02 6.83 16 Total: -1.00 -76.91 341.80 0.22 -76.69 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: 0.20 Total: 37.42 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: 5.30 Total: -12.48 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -7.27 Total: -119.00 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -76.91 0.22 -76.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166820470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.681 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds