Wall clock time and date at job start Tue Mar 31 2020 11:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00201 * 2 1 4 4 H 1.48497 * 109.47338 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46789 * 299.99888 * 3 2 1 6 6 H 1.48507 * 109.47393 * 59.99534 * 3 2 1 7 7 C 1.38813 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00249 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99917 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00199 * 179.97438 * 9 7 2 11 11 H 1.09007 * 112.88392 * 26.84483 * 10 9 7 12 12 C 1.53946 * 113.66736 * 255.50207 * 10 9 7 13 13 C 1.53955 * 87.37790 * 270.12605 * 12 10 9 14 14 H 1.08999 * 113.66459 * 220.82759 * 13 12 10 15 15 N 1.46502 * 113.66161 * 89.77868 * 13 12 10 16 16 C 1.34774 * 120.00437 * 104.50463 * 15 13 12 17 17 O 1.21783 * 119.99805 * 359.97438 * 16 15 13 18 18 C 1.41520 * 120.00153 * 180.02562 * 16 15 13 19 19 C 1.35619 * 119.99795 * 186.56997 * 18 16 15 20 20 C 1.41676 * 119.99898 * 8.09930 * 19 18 16 21 21 C 1.38288 * 126.25783 * 217.66780 * 20 19 18 22 22 C 1.39785 * 107.07554 * 179.88414 * 21 20 19 23 23 C 1.35502 * 107.91089 * 0.38608 * 22 21 20 24 24 N 1.35752 * 108.91147 * 359.75706 * 23 22 21 25 25 H 0.96998 * 125.69025 * 180.02562 * 24 23 22 26 26 C 1.52902 * 113.74660 * 158.26630 * 10 9 7 27 27 C 1.52906 * 121.13791 * 323.87256 * 26 10 9 28 28 C 1.53952 * 86.78284 * 209.38153 * 27 26 10 29 29 C 1.52912 * 121.13662 * 215.30430 * 26 10 9 30 30 H 0.97003 * 120.00055 * 359.97438 * 1 2 3 31 31 H 0.97001 * 119.99636 * 0.02562 * 9 7 2 32 32 H 1.09003 * 113.58050 * 24.76267 * 12 10 9 33 33 H 1.08996 * 113.58307 * 155.48441 * 12 10 9 34 34 H 0.97009 * 119.99976 * 284.50696 * 15 13 12 35 35 H 1.07991 * 120.00122 * 6.56416 * 18 16 15 36 36 H 1.07992 * 119.99740 * 188.10404 * 19 18 16 37 37 H 1.08002 * 126.45721 * 0.02562 * 21 20 19 38 38 H 1.08003 * 126.03922 * 180.10685 * 22 21 20 39 39 H 1.08002 * 125.54258 * 179.76331 * 23 22 21 40 40 H 1.09000 * 113.66188 * 323.85207 * 27 26 10 41 41 H 1.09003 * 113.66323 * 94.90896 * 27 26 10 42 42 H 1.09006 * 113.58177 * 270.12930 * 28 27 26 43 43 H 1.08994 * 113.65622 * 139.34684 * 28 27 26 44 44 H 1.08997 * 113.66453 * 265.09190 * 29 26 10 45 45 H 1.09001 * 113.65987 * 36.15317 * 29 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0901 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 3.0459 -3.5759 0.4540 12 6 2.0612 -4.3685 -1.3645 13 6 0.7697 -5.0779 -0.9184 14 1 0.7298 -6.1306 -1.1981 15 7 -0.4521 -4.3479 -1.2657 16 6 -1.2184 -4.7665 -2.2923 17 8 -0.8950 -5.7513 -2.9316 18 6 -2.3984 -4.0610 -2.6281 19 6 -3.2385 -4.5548 -3.5713 20 6 -3.0287 -5.8538 -4.0965 21 6 -3.2189 -6.2458 -5.4090 22 6 -2.8926 -7.6030 -5.4833 23 6 -2.5256 -8.0118 -4.2447 24 7 -2.6038 -6.9581 -3.3924 25 1 -2.3950 -6.9795 -2.4454 26 6 1.2399 -4.8401 0.5188 27 6 0.2381 -4.6688 1.6612 28 6 0.5304 -6.1366 2.0220 29 6 1.8942 -5.9589 1.3301 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3880 -0.0002 32 1 1.9187 -3.6936 -2.2085 33 1 2.9050 -5.0447 -1.5018 34 1 -0.7095 -3.5632 -0.7568 35 1 -2.6299 -3.1294 -2.1333 36 1 -4.0673 -3.9579 -3.9219 37 1 -3.5540 -5.6206 -6.2234 38 1 -2.9311 -8.2181 -6.3702 39 1 -2.2203 -9.0131 -3.9788 40 1 0.5602 -3.9586 2.4227 41 1 -0.7842 -4.4964 1.3244 42 1 -0.1243 -6.8481 1.5187 43 1 0.6057 -6.3167 3.0943 44 1 2.1950 -6.8169 0.7290 45 1 2.6819 -5.6112 1.9987 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202811160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:47 Heat of formation + Delta-G solvation = 111.515308 kcal Electronic energy + Delta-G solvation = -26820.065855 eV Core-core repulsion = 23227.586032 eV Total energy + Delta-G solvation = -3592.479824 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14386 -40.52118 -38.74255 -35.34852 -33.75500 -33.48438 -32.29530 -30.67610 -29.88573 -28.12135 -25.55347 -24.99339 -24.20196 -23.62172 -22.18738 -20.69420 -20.16202 -20.13464 -19.52905 -18.43995 -17.36573 -17.22909 -16.22285 -15.51067 -15.30787 -14.85320 -14.62619 -14.33784 -14.10986 -13.97161 -13.58508 -13.24423 -13.14501 -13.04412 -12.64553 -12.51403 -12.13760 -12.08552 -11.96519 -11.78496 -11.57146 -11.42522 -10.99737 -10.90655 -10.73444 -10.22259 -10.13098 -9.88783 -9.81382 -9.74167 -9.55594 -9.39220 -8.91030 -8.68860 -8.35847 -7.45834 -7.07363 -5.89877 -3.17860 0.88337 2.77185 3.17036 3.36989 3.43427 3.45111 3.50627 3.67221 3.68584 4.47520 4.70747 4.90256 4.93826 5.10023 5.10993 5.17527 5.29018 5.32220 5.39137 5.54910 5.56366 5.63924 5.70225 5.80663 5.85619 5.89532 5.96891 6.04011 6.07316 6.10209 6.18797 6.24307 6.29281 6.37057 6.44643 6.50682 6.59588 6.66731 6.71444 6.92425 7.09247 7.14858 7.32274 7.63529 7.81349 7.91380 8.29791 8.55607 9.40839 9.95689 10.29567 11.33021 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.004121 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.316623 B = 6793.285492 C = 8216.870123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.700 5.700 10 C 0.180 3.820 11 H 0.063 0.937 12 C -0.186 4.186 13 C 0.154 3.846 14 H 0.087 0.913 15 N -0.690 5.690 16 C 0.541 3.459 17 O -0.556 6.556 18 C -0.233 4.233 19 C 0.010 3.990 20 C 0.025 3.975 21 C -0.165 4.165 22 C -0.218 4.218 23 C 0.008 3.992 24 N -0.496 5.496 25 H 0.414 0.586 26 C -0.131 4.131 27 C -0.116 4.116 28 C -0.141 4.141 29 C -0.104 4.104 30 H 0.256 0.744 31 H 0.379 0.621 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.408 0.592 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.087 0.913 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.593 -14.387 -2.059 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.091 0.909 9 N -0.339 5.339 10 C 0.067 3.933 11 H 0.081 0.919 12 C -0.228 4.228 13 C 0.048 3.952 14 H 0.105 0.895 15 N -0.341 5.341 16 C 0.332 3.668 17 O -0.438 6.438 18 C -0.255 4.255 19 C -0.011 4.011 20 C -0.088 4.088 21 C -0.190 4.190 22 C -0.243 4.243 23 C -0.129 4.129 24 N -0.089 5.089 25 H 0.254 0.746 26 C -0.133 4.133 27 C -0.153 4.153 28 C -0.178 4.178 29 C -0.142 4.142 30 H 0.066 0.934 31 H 0.214 0.786 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.246 0.754 35 H 0.154 0.846 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.174 0.826 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.193 -14.859 -2.276 15.904 hybrid contribution 0.293 1.507 0.512 1.618 sum -4.900 -13.353 -1.764 14.332 Atomic orbital electron populations 1.69625 1.05106 1.25799 1.57627 1.24714 0.95558 0.97717 1.02620 0.86098 0.78854 0.83918 0.77185 1.20530 1.21823 1.21838 1.19318 0.91208 0.83777 1.42864 0.90889 1.42078 1.05255 0.99360 1.87226 1.21032 0.94656 0.85127 0.92438 0.91868 1.24278 0.96148 1.00185 1.02161 1.21387 0.84616 0.95571 0.93637 0.89455 1.45787 1.23994 1.31497 1.32811 1.17226 0.84717 0.84605 0.80238 1.90864 1.74311 1.27446 1.51167 1.22209 0.96158 1.03481 1.03603 1.20775 0.96546 0.91827 0.91902 1.17985 1.09506 0.88543 0.92765 1.21243 1.07499 0.95665 0.94607 1.20641 1.10902 0.95930 0.96805 1.21833 1.07264 0.93087 0.90750 1.42259 1.47958 1.07659 1.10975 0.74637 1.23440 0.98588 0.98405 0.92891 1.22512 0.98794 0.95908 0.98104 1.22852 0.97445 0.97637 0.99907 1.22488 0.96718 0.97015 0.98012 0.93430 0.78550 0.91018 0.90698 0.75416 0.84615 0.84045 0.84862 0.85205 0.82594 0.89423 0.92037 0.90940 0.91903 0.91707 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.37 13.06 55.49 0.72 -25.65 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.69 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.36 9.98 -15.06 -0.15 -6.51 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 9 N -0.70 -16.23 4.98 -52.99 -0.26 -16.49 16 10 C 0.18 3.43 4.35 -67.49 -0.29 3.13 16 11 H 0.06 1.22 8.12 -51.93 -0.42 0.80 16 12 C -0.19 -3.34 7.68 -25.75 -0.20 -3.54 16 13 C 0.15 2.52 4.09 -67.40 -0.28 2.24 16 14 H 0.09 1.43 7.54 -51.93 -0.39 1.04 16 15 N -0.69 -11.52 4.71 -56.20 -0.26 -11.78 16 16 C 0.54 8.94 7.02 -15.01 -0.11 8.83 16 17 O -0.56 -10.02 11.26 5.11 0.06 -9.97 16 18 C -0.23 -3.34 9.85 -39.27 -0.39 -3.72 16 19 C 0.01 0.13 9.96 -39.21 -0.39 -0.26 16 20 C 0.02 0.35 5.37 -83.90 -0.45 -0.10 16 21 C -0.17 -2.25 10.86 -38.98 -0.42 -2.68 16 22 C -0.22 -2.83 10.81 -39.98 -0.43 -3.26 16 23 C 0.01 0.10 11.90 -16.79 -0.20 -0.10 16 24 N -0.50 -6.79 3.91 -10.56 -0.04 -6.83 16 25 H 0.41 5.48 7.30 -40.82 -0.30 5.18 16 26 C -0.13 -2.03 0.77 -154.63 -0.12 -2.15 16 27 C -0.12 -1.73 7.19 -26.28 -0.19 -1.92 16 28 C -0.14 -1.73 8.08 -25.75 -0.21 -1.94 16 29 C -0.10 -1.34 7.84 -26.28 -0.21 -1.54 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.38 9.01 5.42 -40.82 -0.22 8.79 16 32 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.41 7.24 5.90 -40.82 -0.24 7.00 16 35 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.13 1.40 8.06 -52.48 -0.42 0.98 16 39 H 0.16 1.51 8.06 -52.49 -0.42 1.08 16 40 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.06 0.93 7.51 -51.93 -0.39 0.54 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 365.23 15.07 5.50 5.50 Total: -1.00 -30.16 365.23 -10.01 -40.17 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -6.58 Total: 22.25 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: -4.12 Total: -13.89 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: 0.15 Total: -60.76 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.06 Total: -9.97 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.16 -10.01 -40.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202811160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.686 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds