Wall clock time and date at job start Tue Mar 31 2020 11:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40139 * 120.88416 * 224.76457 * 3 2 1 5 5 C 1.37868 * 119.16052 * 180.27026 * 4 3 2 6 6 N 1.31966 * 121.00824 * 0.02562 * 5 4 3 7 7 C 1.32365 * 121.96677 * 359.97438 * 6 5 4 8 8 N 1.39030 * 119.64107 * 179.97438 * 7 6 5 9 9 C 1.46850 * 110.99852 * 124.23295 * 8 7 6 10 10 C 1.53036 * 109.52127 * 174.15817 * 9 8 7 11 11 C 1.53119 * 109.27777 * 59.18411 * 10 9 8 12 12 O 1.42894 * 109.52590 * 182.43754 * 11 10 9 13 13 C 1.42898 * 114.00311 * 269.68320 * 12 11 10 14 14 C 1.52992 * 109.47678 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47471 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47470 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99680 * 0.02562 * 16 15 14 18 18 C 1.37866 * 120.00353 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00267 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00314 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47402 * 89.99760 * 20 18 16 22 22 H 1.48500 * 109.47369 * 210.00309 * 20 18 16 23 23 H 1.48500 * 109.46799 * 329.99919 * 20 18 16 24 24 C 1.53123 * 109.16004 * 302.34559 * 11 10 9 25 25 C 1.46843 * 111.00080 * 0.02835 * 8 7 6 26 26 C 1.39024 * 120.71795 * 0.02562 * 7 6 5 27 27 H 1.07994 * 120.42418 * 0.25561 * 4 3 2 28 28 H 1.08001 * 119.49807 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.46188 * 294.17995 * 9 8 7 30 30 H 1.09007 * 109.45757 * 54.14819 * 9 8 7 31 31 H 1.08999 * 109.50421 * 299.24364 * 10 9 8 32 32 H 1.09001 * 109.50198 * 179.12195 * 10 9 8 33 33 H 1.09004 * 109.52263 * 62.24728 * 11 10 9 34 34 H 1.09000 * 109.47050 * 299.99993 * 13 12 11 35 35 H 1.09004 * 109.47071 * 59.99640 * 13 12 11 36 36 H 1.09008 * 109.46872 * 299.99888 * 14 13 12 37 37 H 1.08996 * 109.47203 * 59.99511 * 14 13 12 38 38 H 1.08997 * 109.47362 * 299.99594 * 15 14 13 39 39 H 1.09002 * 109.47624 * 60.00197 * 15 14 13 40 40 H 0.96991 * 120.00394 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.49994 * 297.70806 * 24 11 10 42 42 H 1.08997 * 109.50494 * 177.59580 * 24 11 10 43 43 H 1.09006 * 109.45859 * 305.85341 * 25 8 7 44 44 H 1.08998 * 109.46809 * 65.81627 * 25 8 7 45 45 H 1.08000 * 120.53779 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2870 0.8549 0.8469 5 6 4.6650 0.8300 0.8137 6 7 5.3109 0.0173 -0.0010 7 6 4.6746 -0.8068 -0.8184 8 7 5.4037 -1.6423 -1.6571 9 6 5.0287 -3.0477 -1.4553 10 6 5.7410 -3.9207 -2.4909 11 6 7.2552 -3.7503 -2.3402 12 8 7.9244 -4.5194 -3.3415 13 6 8.2376 -5.8536 -2.9370 14 6 8.9475 -6.5802 -4.0810 15 6 9.2822 -8.0089 -3.6481 16 6 9.9809 -8.7248 -4.7753 17 1 10.1680 -8.2118 -5.7072 18 6 10.3824 -10.0341 -4.6166 19 7 10.1560 -10.6584 -3.4814 20 14 11.2491 -10.9212 -6.0136 21 1 12.7153 -10.7179 -5.8950 22 1 10.9433 -12.3727 -5.9435 23 1 10.7776 -10.3782 -7.3128 24 6 7.6135 -2.2709 -2.5066 25 6 6.8469 -1.4458 -1.4706 26 6 3.2852 -0.8452 -0.8482 27 1 2.7682 1.5243 1.5170 28 1 5.2245 1.4864 1.4638 29 1 5.3210 -3.3612 -0.4532 30 1 3.9501 -3.1557 -1.5695 31 1 5.4386 -3.6167 -3.4930 32 1 5.4747 -4.9655 -2.3310 33 1 7.5634 -4.0908 -1.3516 34 1 8.8898 -5.8250 -2.0641 35 1 7.3181 -6.3826 -2.6862 36 1 8.2948 -6.6088 -4.9537 37 1 9.8669 -6.0514 -4.3322 38 1 9.9347 -7.9807 -2.7754 39 1 8.3626 -8.5375 -3.3973 40 1 10.4381 -11.5797 -3.3699 41 1 7.3406 -1.9410 -3.5090 42 1 8.6850 -2.1371 -2.3580 43 1 7.0888 -0.3903 -1.5958 44 1 7.1307 -1.7668 -0.4684 45 1 2.7691 -1.5184 -1.5166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205673213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:21 Heat of formation + Delta-G solvation = 16.017621 kcal Electronic energy + Delta-G solvation = -24609.604064 eV Core-core repulsion = 21012.983149 eV Total energy + Delta-G solvation = -3596.620914 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35128 -39.30180 -37.55276 -36.95919 -34.17581 -33.36570 -33.00807 -31.39416 -31.20905 -29.79968 -26.73473 -25.60646 -24.66536 -23.41413 -22.74361 -22.61920 -20.56428 -19.98948 -19.41913 -17.27391 -16.91639 -16.58051 -16.45271 -15.98746 -15.67438 -15.27089 -15.00814 -14.76432 -14.50612 -14.44587 -14.19900 -13.84608 -13.69441 -13.53795 -13.42227 -12.94316 -12.58713 -12.44073 -12.23917 -12.10405 -12.04246 -11.47275 -11.35968 -11.10984 -10.82813 -10.76187 -10.53215 -10.46224 -10.35036 -10.27430 -10.12538 -9.82240 -9.43987 -9.16064 -9.10757 -8.61203 -8.36155 -6.01499 -4.03685 0.08155 0.52394 2.02094 2.42632 2.92029 3.16276 3.32197 3.36833 3.38217 3.42117 3.84365 3.92729 4.30184 4.41224 4.45433 4.46372 4.57511 4.65965 4.82781 4.96913 5.03239 5.04418 5.09641 5.23504 5.29498 5.34583 5.38027 5.45219 5.58786 5.60319 5.67445 5.72813 5.82559 5.91565 6.05859 6.12542 6.20030 6.32799 6.66172 6.68189 6.72750 6.83054 7.08822 7.40407 7.57139 7.65858 7.77630 7.98079 8.41079 9.03024 9.60498 11.10022 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.001827 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.464623 B =15319.930836 C =15801.286743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C 0.252 3.748 3 C 0.044 3.956 4 C -0.163 4.163 5 C 0.137 3.863 6 N -0.504 5.504 7 C 0.325 3.675 8 N -0.475 5.475 9 C 0.062 3.938 10 C -0.141 4.141 11 C 0.086 3.914 12 O -0.381 6.381 13 C 0.062 3.938 14 C -0.108 4.108 15 C 0.023 3.977 16 C -0.519 4.519 17 H 0.057 0.943 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.119 4.119 25 C 0.071 3.929 26 C -0.143 4.143 27 H 0.144 0.856 28 H 0.168 0.832 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.042 0.958 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 24.566 10.593 29.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.071 5.071 2 C -0.064 4.064 3 C 0.033 3.967 4 C -0.186 4.186 5 C -0.021 4.021 6 N -0.218 5.218 7 C 0.093 3.907 8 N -0.192 5.192 9 C -0.064 4.064 10 C -0.180 4.180 11 C 0.028 3.972 12 O -0.300 6.300 13 C -0.014 4.014 14 C -0.145 4.145 15 C -0.014 4.014 16 C -0.557 4.557 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.156 4.156 25 C -0.055 4.055 26 C -0.168 4.168 27 H 0.162 0.838 28 H 0.185 0.815 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.111 0.889 44 H 0.072 0.928 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.433 24.509 9.955 29.669 hybrid contribution 0.045 -0.851 0.234 0.883 sum -13.388 23.658 10.189 29.031 Atomic orbital electron populations 1.81307 1.11787 1.06991 1.07048 1.25456 0.92367 0.94313 0.94274 1.16001 0.84769 0.97893 0.98066 1.22055 0.95609 1.00356 1.00610 1.22563 0.90968 0.94283 0.94288 1.67608 1.41283 1.07665 1.05284 1.19731 0.89550 0.93147 0.88299 1.59074 1.07658 1.06118 1.46332 1.22301 1.01139 0.83939 0.98991 1.22156 0.95951 0.99626 1.00221 1.22053 0.91132 0.91904 0.92121 1.87952 1.77405 1.25216 1.39452 1.22830 0.98274 0.81304 0.98952 1.21648 0.98967 0.97786 0.96140 1.19049 0.96731 0.88684 0.96924 1.21226 1.37494 0.97049 0.99980 0.92512 1.25028 0.96107 0.97605 0.95783 1.69962 1.47372 1.11818 1.24451 0.86565 0.79908 0.78789 0.82582 1.20639 1.21232 1.19827 1.21742 1.00421 0.93014 1.00470 1.22012 0.83439 1.01725 0.98318 1.21625 0.93370 1.01215 1.00628 0.83769 0.81484 0.93040 0.89474 0.89721 0.90247 0.92517 0.93868 0.93923 0.92587 0.92586 0.96517 0.96517 0.92992 0.90065 0.90087 0.88853 0.92804 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -4.00 18.54 41.84 0.78 -3.23 16 2 C 0.25 1.94 15.40 -22.47 -0.35 1.59 16 3 C 0.04 0.27 5.75 -106.74 -0.61 -0.35 16 4 C -0.16 -0.72 9.85 -39.00 -0.38 -1.11 16 5 C 0.14 0.68 11.16 -17.63 -0.20 0.48 16 6 N -0.50 -3.86 8.65 -12.51 -0.11 -3.97 16 7 C 0.33 2.58 6.41 -155.06 -0.99 1.59 16 8 N -0.47 -4.08 4.68 -173.27 -0.81 -4.89 16 9 C 0.06 0.50 5.25 -3.83 -0.02 0.48 16 10 C -0.14 -1.43 5.72 -26.65 -0.15 -1.58 16 11 C 0.09 1.02 2.68 -26.61 -0.07 0.95 16 12 O -0.38 -6.05 9.99 -35.23 -0.35 -6.41 16 13 C 0.06 1.08 5.75 37.15 0.21 1.30 16 14 C -0.11 -2.27 5.52 -26.74 -0.15 -2.42 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.77 9.11 -34.44 -0.31 -15.08 16 17 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 20 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.12 -1.20 5.75 -26.65 -0.15 -1.35 16 25 C 0.07 0.63 4.65 -3.84 -0.02 0.61 16 26 C -0.14 -0.95 8.93 -38.78 -0.35 -1.29 16 27 H 0.14 0.31 8.06 -52.49 -0.42 -0.11 16 28 H 0.17 0.34 8.06 -52.49 -0.42 -0.08 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.56 6.67 -51.92 -0.35 0.22 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.81 7.96 -51.93 -0.41 0.40 16 33 H 0.06 0.65 7.79 -51.93 -0.40 0.25 16 34 H 0.04 0.73 8.09 -51.93 -0.42 0.31 16 35 H 0.04 0.71 7.96 -51.93 -0.41 0.30 16 36 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 0.81 7.70 -51.93 -0.40 0.41 16 44 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 45 H 0.15 0.83 7.14 -52.49 -0.37 0.45 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -32.28 377.09 -9.84 -42.12 By element: Atomic # 1 Polarization: 1.35 SS G_CDS: -6.96 Total: -5.61 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: -3.78 Total: -14.23 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.59 Total: -38.20 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.35 Total: -6.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.28 -9.84 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.136 kcal (2) G-P(sol) polarization free energy of solvation -32.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds