Wall clock time and date at job start Tue Mar 31 2020 11:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40139 * 120.88416 * 224.76457 * 3 2 1 5 5 C 1.37868 * 119.16052 * 180.27026 * 4 3 2 6 6 N 1.31966 * 121.00824 * 0.02562 * 5 4 3 7 7 C 1.32365 * 121.96677 * 359.97438 * 6 5 4 8 8 N 1.39030 * 119.64107 * 179.97438 * 7 6 5 9 9 C 1.46850 * 110.99852 * 124.23295 * 8 7 6 10 10 C 1.53036 * 109.52127 * 174.15817 * 9 8 7 11 11 C 1.53119 * 109.27777 * 59.18411 * 10 9 8 12 12 O 1.42894 * 109.52590 * 182.43754 * 11 10 9 13 13 C 1.42898 * 114.00311 * 269.68320 * 12 11 10 14 14 C 1.52992 * 109.47678 * 179.97438 * 13 12 11 15 15 C 1.52995 * 109.47471 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47470 * 179.97438 * 15 14 13 17 17 H 1.08005 * 119.99680 * 0.02562 * 16 15 14 18 18 C 1.37866 * 120.00353 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00267 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00314 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47402 * 89.99760 * 20 18 16 22 22 H 1.48500 * 109.47369 * 210.00309 * 20 18 16 23 23 H 1.48500 * 109.46799 * 329.99919 * 20 18 16 24 24 C 1.53123 * 109.16004 * 302.34559 * 11 10 9 25 25 C 1.46843 * 111.00080 * 0.02835 * 8 7 6 26 26 C 1.39024 * 120.71795 * 0.02562 * 7 6 5 27 27 H 1.07994 * 120.42418 * 0.25561 * 4 3 2 28 28 H 1.08001 * 119.49807 * 179.97438 * 5 4 3 29 29 H 1.08995 * 109.46188 * 294.17995 * 9 8 7 30 30 H 1.09007 * 109.45757 * 54.14819 * 9 8 7 31 31 H 1.08999 * 109.50421 * 299.24364 * 10 9 8 32 32 H 1.09001 * 109.50198 * 179.12195 * 10 9 8 33 33 H 1.09004 * 109.52263 * 62.24728 * 11 10 9 34 34 H 1.09000 * 109.47050 * 299.99993 * 13 12 11 35 35 H 1.09004 * 109.47071 * 59.99640 * 13 12 11 36 36 H 1.09008 * 109.46872 * 299.99888 * 14 13 12 37 37 H 1.08996 * 109.47203 * 59.99511 * 14 13 12 38 38 H 1.08997 * 109.47362 * 299.99594 * 15 14 13 39 39 H 1.09002 * 109.47624 * 60.00197 * 15 14 13 40 40 H 0.96991 * 120.00394 * 179.97438 * 19 18 16 41 41 H 1.09004 * 109.49994 * 297.70806 * 24 11 10 42 42 H 1.08997 * 109.50494 * 177.59580 * 24 11 10 43 43 H 1.09006 * 109.45859 * 305.85341 * 25 8 7 44 44 H 1.08998 * 109.46809 * 65.81627 * 25 8 7 45 45 H 1.08000 * 120.53779 * 179.97438 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2870 0.8549 0.8469 5 6 4.6650 0.8300 0.8137 6 7 5.3109 0.0173 -0.0010 7 6 4.6746 -0.8068 -0.8184 8 7 5.4037 -1.6423 -1.6571 9 6 5.0287 -3.0477 -1.4553 10 6 5.7410 -3.9207 -2.4909 11 6 7.2552 -3.7503 -2.3402 12 8 7.9244 -4.5194 -3.3415 13 6 8.2376 -5.8536 -2.9370 14 6 8.9475 -6.5802 -4.0810 15 6 9.2822 -8.0089 -3.6481 16 6 9.9809 -8.7248 -4.7753 17 1 10.1680 -8.2118 -5.7072 18 6 10.3824 -10.0341 -4.6166 19 7 10.1560 -10.6584 -3.4814 20 14 11.2491 -10.9212 -6.0136 21 1 12.7153 -10.7179 -5.8950 22 1 10.9433 -12.3727 -5.9435 23 1 10.7776 -10.3782 -7.3128 24 6 7.6135 -2.2709 -2.5066 25 6 6.8469 -1.4458 -1.4706 26 6 3.2852 -0.8452 -0.8482 27 1 2.7682 1.5243 1.5170 28 1 5.2245 1.4864 1.4638 29 1 5.3210 -3.3612 -0.4532 30 1 3.9501 -3.1557 -1.5695 31 1 5.4386 -3.6167 -3.4930 32 1 5.4747 -4.9655 -2.3310 33 1 7.5634 -4.0908 -1.3516 34 1 8.8898 -5.8250 -2.0641 35 1 7.3181 -6.3826 -2.6862 36 1 8.2948 -6.6088 -4.9537 37 1 9.8669 -6.0514 -4.3322 38 1 9.9347 -7.9807 -2.7754 39 1 8.3626 -8.5375 -3.3973 40 1 10.4381 -11.5797 -3.3699 41 1 7.3406 -1.9410 -3.5090 42 1 8.6850 -2.1371 -2.3580 43 1 7.0888 -0.3903 -1.5958 44 1 7.1307 -1.7668 -0.4684 45 1 2.7691 -1.5184 -1.5166 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205673213.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:20 Heat of formation + Delta-G solvation = -2.142611 kcal Electronic energy + Delta-G solvation = -24610.391550 eV Core-core repulsion = 21012.983149 eV Total energy + Delta-G solvation = -3597.408401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.88799 -40.11056 -38.49171 -37.70233 -35.93315 -34.30421 -33.79553 -33.07014 -31.93091 -30.47147 -28.53829 -26.22366 -25.44385 -24.79902 -23.75834 -23.29918 -22.10002 -21.01978 -20.02242 -18.58020 -17.84744 -17.64680 -17.17801 -16.89851 -16.71937 -16.44541 -16.14378 -15.77713 -15.44193 -15.17739 -15.05297 -14.89457 -14.46245 -14.26004 -14.14744 -14.13336 -13.81100 -13.73392 -13.58183 -13.12955 -12.89962 -12.81423 -12.62956 -12.49107 -12.24640 -12.14109 -11.96843 -11.60782 -11.54108 -11.37400 -11.15672 -10.99200 -10.82272 -10.62650 -10.55506 -10.33720 -9.14170 -8.20746 -6.31542 -0.40591 0.08737 1.41248 1.42450 1.42528 1.53814 1.87318 2.35345 2.40539 2.63097 2.70801 2.88939 3.12663 3.46677 3.75183 3.80570 3.88528 3.97096 4.05981 4.16914 4.19266 4.20958 4.32970 4.34604 4.35876 4.54242 4.58943 4.63176 4.64844 4.70202 4.87303 4.88248 4.95087 4.98228 5.02463 5.06271 5.19231 5.23098 5.26767 5.41035 5.50835 5.68418 5.71468 5.83555 6.09019 6.21289 6.25039 6.39247 6.84308 6.93988 7.37612 8.91163 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.031758 B = 0.001827 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.464623 B =15319.930836 C =15801.286743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.278 3.722 3 C 0.036 3.964 4 C -0.144 4.144 5 C 0.135 3.865 6 N -0.521 5.521 7 C 0.307 3.693 8 N -0.484 5.484 9 C 0.067 3.933 10 C -0.137 4.137 11 C 0.078 3.922 12 O -0.396 6.396 13 C 0.075 3.925 14 C -0.097 4.097 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 C -0.112 4.112 25 C 0.082 3.918 26 C -0.143 4.143 27 H 0.172 0.828 28 H 0.199 0.801 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.053 0.947 38 H -0.003 1.003 39 H -0.003 1.003 40 H 0.264 0.736 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.053 0.947 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 25.970 10.973 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.037 4.037 3 C 0.025 3.975 4 C -0.167 4.167 5 C -0.022 4.022 6 N -0.236 5.236 7 C 0.076 3.924 8 N -0.201 5.201 9 C -0.058 4.058 10 C -0.175 4.175 11 C 0.021 3.979 12 O -0.316 6.316 13 C -0.001 4.001 14 C -0.135 4.135 15 C -0.010 4.010 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.198 4.198 19 N -0.572 5.572 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.189 1.189 24 C -0.150 4.150 25 C -0.044 4.044 26 C -0.169 4.169 27 H 0.190 0.810 28 H 0.216 0.784 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.015 0.985 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -13.532 25.936 10.336 31.026 hybrid contribution 0.066 -1.189 0.198 1.207 sum -13.466 24.747 10.534 30.078 Atomic orbital electron populations 1.81335 1.13128 1.08657 1.08715 1.25586 0.92409 0.92890 0.92850 1.16044 0.83829 0.98741 0.98891 1.22380 0.95498 0.99276 0.99548 1.23108 0.91403 0.93894 0.93827 1.67597 1.42154 1.08083 1.05733 1.19712 0.89811 0.93739 0.89120 1.59074 1.07403 1.06336 1.47272 1.22259 1.01823 0.83581 0.98182 1.22078 0.94794 1.00045 1.00572 1.22339 0.92005 0.92236 0.91358 1.87902 1.78168 1.24423 1.41078 1.22486 0.98226 0.82200 0.97198 1.21391 0.99261 0.95471 0.97349 1.18928 0.95114 0.91275 0.95670 1.21666 1.38014 0.97862 1.00757 0.92294 1.25968 0.96766 0.98499 0.98535 1.70082 1.48292 1.12308 1.26510 0.85433 0.78820 0.77441 0.79274 1.19698 1.20599 1.18891 1.21690 1.00790 0.91949 1.00580 1.21862 0.83709 1.01332 0.97537 1.21648 0.92996 1.01443 1.00791 0.81044 0.78445 0.92797 0.87796 0.90527 0.90504 0.92043 0.93445 0.93308 0.92855 0.92841 0.98483 0.98445 0.92687 0.90895 0.89997 0.88653 0.92855 0.82891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.66 18.54 19.00 0.35 -8.30 16 2 C 0.28 3.90 15.40 88.33 1.36 5.26 16 3 C 0.04 0.37 5.75 -21.24 -0.12 0.24 16 4 C -0.14 -0.83 9.85 22.64 0.22 -0.60 16 5 C 0.14 0.93 11.16 84.58 0.94 1.87 16 6 N -0.52 -6.87 8.65 -193.48 -1.67 -8.54 16 7 C 0.31 4.39 6.41 133.04 0.85 5.24 16 8 N -0.48 -7.74 4.68 -702.11 -3.28 -11.03 16 9 C 0.07 1.00 5.25 86.32 0.45 1.45 16 10 C -0.14 -2.68 5.72 30.65 0.18 -2.51 16 11 C 0.08 1.82 2.68 30.67 0.08 1.90 16 12 O -0.40 -12.49 9.99 -148.98 -1.49 -13.98 16 13 C 0.08 2.61 5.75 71.98 0.41 3.03 16 14 C -0.10 -4.14 5.52 30.59 0.17 -3.98 16 15 C 0.03 1.44 4.97 29.85 0.15 1.59 16 16 C -0.55 -31.39 9.11 25.60 0.23 -31.16 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -56.48 13.29 21.44 0.28 -56.19 16 20 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 24 C -0.11 -2.21 5.75 30.65 0.18 -2.03 16 25 C 0.08 1.35 4.65 86.32 0.40 1.75 16 26 C -0.14 -1.67 8.93 22.79 0.20 -1.47 16 27 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 28 H 0.20 0.04 8.06 -2.91 -0.02 0.02 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 1.19 6.67 -2.38 -0.02 1.17 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.53 7.96 -2.39 -0.02 1.51 16 33 H 0.06 1.37 7.79 -2.38 -0.02 1.35 16 34 H 0.05 1.60 8.09 -2.39 -0.02 1.58 16 35 H 0.05 1.62 7.96 -2.38 -0.02 1.61 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 43 H 0.10 1.54 7.70 -2.38 -0.02 1.52 16 44 H 0.05 0.88 8.11 -2.39 -0.02 0.86 16 45 H 0.15 1.51 7.14 -2.91 -0.02 1.49 16 Total: -1.00 -69.86 377.09 3.37 -66.49 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: 0.98 Total: 4.10 kcal Atomic # 6 Polarization: -25.11 SS G_CDS: 6.18 Total: -18.94 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -4.32 Total: -84.07 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.49 Total: -13.98 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.86 3.37 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205673213.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.348 kcal (2) G-P(sol) polarization free energy of solvation -69.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds