Wall clock time and date at job start Tue Mar 31 2020 11:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29737 * 126.29529 * 2 1 4 4 O 1.41354 * 109.74483 * 179.97438 * 3 2 1 5 5 C 1.34814 * 109.32991 * 359.97438 * 4 3 2 6 6 C 1.38981 * 133.45547 * 179.97438 * 5 4 3 7 7 C 1.37801 * 119.79689 * 179.74739 * 6 5 4 8 8 C 1.38777 * 120.59987 * 0.58145 * 7 6 5 9 9 C 1.50706 * 119.74248 * 179.70753 * 8 7 6 10 10 N 1.46902 * 109.46577 * 269.72499 * 9 8 7 11 11 C 1.46952 * 111.00532 * 293.79799 * 10 9 8 12 12 C 1.53043 * 109.36888 * 176.81565 * 11 10 9 13 13 N 1.46952 * 109.36433 * 58.40008 * 12 11 10 14 14 C 1.46905 * 110.99968 * 176.81239 * 13 12 11 15 15 C 1.50697 * 109.47136 * 293.80150 * 14 13 12 16 16 H 1.07998 * 120.00274 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99795 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99776 * 179.97438 * 17 15 14 19 19 Si 1.86793 * 120.00124 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47544 * 89.99672 * 19 17 15 21 21 H 1.48504 * 109.47145 * 209.99655 * 19 17 15 22 22 H 1.48504 * 109.47215 * 329.99580 * 19 17 15 23 23 C 1.46958 * 110.88310 * 300.67872 * 13 12 11 24 24 C 1.46962 * 110.99604 * 169.99972 * 10 9 8 25 25 C 1.36628 * 120.51552 * 359.42916 * 8 7 6 26 26 C 1.39684 * 119.79035 * 0.27780 * 25 8 7 27 27 H 1.08998 * 109.47359 * 270.00388 * 1 2 3 28 28 H 1.09000 * 109.47109 * 30.00537 * 1 2 3 29 29 H 1.09001 * 109.46665 * 150.00492 * 1 2 3 30 30 H 1.08001 * 120.09957 * 0.07288 * 6 5 4 31 31 H 1.08000 * 119.69640 * 180.30769 * 7 6 5 32 32 H 1.09000 * 109.47318 * 29.72007 * 9 8 7 33 33 H 1.09000 * 109.47161 * 149.72637 * 9 8 7 34 34 H 1.09000 * 109.48724 * 296.78548 * 11 10 9 35 35 H 1.09001 * 109.48623 * 56.84062 * 11 10 9 36 36 H 1.08996 * 109.48745 * 298.43493 * 12 11 10 37 37 H 1.08997 * 109.49133 * 178.37264 * 12 11 10 38 38 H 1.09002 * 109.47123 * 53.79963 * 14 13 12 39 39 H 1.08998 * 109.47102 * 173.79674 * 14 13 12 40 40 H 0.97003 * 119.99906 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.49097 * 299.36056 * 23 13 12 42 42 H 1.09000 * 109.48830 * 179.28622 * 23 13 12 43 43 H 1.09004 * 109.48585 * 303.15533 * 24 10 9 44 44 H 1.08996 * 109.48862 * 63.22185 * 24 10 9 45 45 H 1.07996 * 120.09952 * 180.25374 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2750 1.0456 0.0000 4 8 3.6300 0.6430 0.0006 5 6 3.6954 -0.7036 0.0015 6 6 4.7494 -1.6094 0.0020 7 6 4.4893 -2.9626 0.0083 8 6 3.1830 -3.4310 0.0021 9 6 2.9208 -4.9151 0.0025 10 7 2.8362 -5.3976 -1.3825 11 6 1.6607 -4.8383 -2.0643 12 6 1.6524 -5.3005 -3.5232 13 7 1.6349 -6.7693 -3.5689 14 6 1.5503 -7.2519 -4.9539 15 6 0.2183 -6.8622 -5.5411 16 1 -0.4943 -6.3116 -4.9451 17 6 -0.0906 -7.2088 -6.8394 18 7 -1.2532 -6.8692 -7.3518 19 14 1.1417 -8.1619 -7.8701 20 1 0.9159 -9.6186 -7.6904 21 1 0.9690 -7.8072 -9.3018 22 1 2.5201 -7.8176 -7.4377 23 6 2.8105 -7.3286 -2.8872 24 6 2.8186 -6.8664 -1.4282 25 6 2.1327 -2.5571 0.0014 26 6 2.3746 -1.1814 0.0010 27 1 -0.3634 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 5.7692 -1.2538 0.0027 31 1 5.3096 -3.6651 0.0136 32 1 3.7338 -5.4276 0.5167 33 1 1.9809 -5.1178 0.5159 34 1 0.7538 -5.1841 -1.5681 35 1 1.7029 -3.7497 -2.0278 36 1 2.5461 -4.9317 -4.0265 37 1 0.7660 -4.9105 -4.0233 38 1 2.3516 -6.8064 -5.5435 39 1 1.6498 -8.3372 -4.9671 40 1 -1.4707 -7.1133 -8.2650 41 1 3.7174 -6.9828 -3.3833 42 1 2.7682 -8.4172 -2.9236 43 1 3.7052 -7.2564 -0.9281 44 1 1.9250 -7.2352 -0.9249 45 1 1.1188 -2.9290 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001248701976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:19 Heat of formation + Delta-G solvation = 56.425082 kcal Electronic energy + Delta-G solvation = -25913.571158 eV Core-core repulsion = 22318.702443 eV Total energy + Delta-G solvation = -3594.868715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81501 -40.42320 -38.94871 -36.52718 -35.69761 -34.57530 -32.40634 -31.79242 -31.44741 -30.18603 -29.66182 -27.51414 -25.20238 -24.61469 -24.13374 -22.96246 -22.34693 -21.46172 -20.59635 -18.94665 -18.27822 -18.02116 -17.28349 -17.06431 -16.58883 -16.36769 -15.89328 -15.83391 -15.34317 -15.26499 -15.19919 -14.85779 -14.46764 -14.36304 -14.33191 -14.23844 -13.70239 -13.54359 -13.35194 -13.02827 -12.91702 -12.86023 -12.71619 -12.41088 -12.29907 -12.14731 -12.02080 -11.91499 -11.82995 -11.78673 -11.47356 -11.30413 -10.77810 -9.95826 -9.58890 -9.24563 -9.01080 -8.28521 -6.31687 -0.39777 0.18675 1.00457 1.34576 1.36218 1.45752 1.46672 2.34238 2.45779 3.04491 3.04619 3.13903 3.20623 3.24929 3.53208 3.74624 4.01776 4.11672 4.17869 4.23155 4.27333 4.35390 4.41375 4.46591 4.52532 4.55796 4.60083 4.68302 4.73026 4.77783 4.82996 4.91866 4.93400 4.98544 5.00746 5.04280 5.11418 5.14770 5.19923 5.20548 5.48794 5.53337 5.63358 5.94174 6.06342 6.15623 6.18227 6.37986 6.66546 6.74230 7.32096 8.87874 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.016279 B = 0.003029 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1719.629549 B = 9240.561247 C =10154.148786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.140 3.860 3 N -0.330 5.330 4 O -0.125 6.125 5 C 0.058 3.942 6 C -0.134 4.134 7 C -0.029 4.029 8 C -0.106 4.106 9 C 0.100 3.900 10 N -0.541 5.541 11 C 0.070 3.930 12 C 0.071 3.929 13 N -0.544 5.544 14 C 0.172 3.828 15 C -0.516 4.516 16 H 0.039 0.961 17 C 0.009 3.991 18 N -0.947 5.947 19 Si 0.946 3.054 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.254 1.254 23 C 0.049 3.951 24 C 0.069 3.931 25 C -0.032 4.032 26 C -0.214 4.214 27 H 0.116 0.884 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.156 0.844 31 H 0.169 0.831 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.018 0.982 37 H 0.055 0.945 38 H -0.018 1.018 39 H 0.030 0.970 40 H 0.267 0.733 41 H 0.028 0.972 42 H 0.081 0.919 43 H 0.109 0.891 44 H 0.041 0.959 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.014 6.268 20.300 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.040 4.040 3 N -0.078 5.078 4 O -0.133 6.133 5 C 0.004 3.996 6 C -0.154 4.154 7 C -0.048 4.048 8 C -0.107 4.107 9 C -0.026 4.026 10 N -0.266 5.266 11 C -0.058 4.058 12 C -0.058 4.058 13 N -0.268 5.268 14 C 0.045 3.955 15 C -0.554 4.554 16 H 0.057 0.943 17 C -0.189 4.189 18 N -0.588 5.588 19 Si 0.770 3.230 20 H -0.187 1.187 21 H -0.208 1.208 22 H -0.178 1.178 23 C -0.079 4.079 24 C -0.059 4.059 25 C -0.052 4.052 26 C -0.217 4.217 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.124 0.876 30 H 0.174 0.826 31 H 0.186 0.814 32 H 0.130 0.870 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.036 0.964 37 H 0.073 0.927 38 H 0.000 1.000 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.059 0.941 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.098 7.587 20.154 24.226 hybrid contribution -0.067 -0.679 -1.181 1.364 sum 11.031 6.908 18.973 23.008 Atomic orbital electron populations 1.20711 0.81761 1.06079 1.06085 1.25273 0.99650 0.89084 0.89953 1.79802 0.85255 1.19695 1.23062 1.89063 1.23205 1.18638 1.82431 1.20772 0.96608 0.84493 0.97685 1.20366 0.97632 0.91071 1.06318 1.21362 0.97453 0.93878 0.92142 1.19552 0.93004 0.95869 1.02282 1.21063 1.02885 0.90112 0.88588 1.62166 1.40390 1.08294 1.15768 1.22074 0.91522 0.99435 0.92764 1.21914 0.99236 0.88066 0.96580 1.62043 1.40035 1.07855 1.16907 1.19905 0.94546 0.95283 0.85747 1.21249 1.01004 1.35552 0.97578 0.94311 1.25829 0.97162 0.96864 0.99030 1.70045 1.23833 1.48800 1.16097 0.85729 0.80039 0.79552 0.77705 1.18736 1.20841 1.17824 1.22278 0.90853 0.99723 0.95031 1.22138 1.02097 0.86596 0.95026 1.20563 1.00876 0.89261 0.94544 1.20869 0.90991 0.95715 1.14146 0.86590 0.88832 0.87555 0.82635 0.81377 0.86975 0.92796 0.94315 0.89952 0.96412 0.92657 1.00015 0.95197 0.92446 0.95329 0.90073 0.87272 0.94118 0.83554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 10.48 71.24 0.75 -0.38 16 2 C 0.14 3.07 7.46 45.04 0.34 3.40 16 3 N -0.33 -9.09 12.81 -43.47 -0.56 -9.65 16 4 O -0.13 -3.65 12.06 29.94 0.36 -3.29 16 5 C 0.06 1.41 7.48 22.99 0.17 1.59 16 6 C -0.13 -2.47 10.07 22.34 0.23 -2.25 16 7 C -0.03 -0.44 9.66 22.30 0.22 -0.23 16 8 C -0.11 -1.79 4.87 -20.11 -0.10 -1.89 16 9 C 0.10 1.53 5.11 85.56 0.44 1.97 16 10 N -0.54 -12.17 4.70 -900.27 -4.23 -16.41 16 11 C 0.07 1.97 5.23 86.31 0.45 2.42 16 12 C 0.07 2.70 5.43 86.31 0.47 3.17 16 13 N -0.54 -21.99 4.70 -900.30 -4.23 -26.22 16 14 C 0.17 8.25 3.79 85.55 0.32 8.58 16 15 C -0.52 -29.73 9.03 25.60 0.23 -29.50 16 16 H 0.04 2.48 7.38 -2.91 -0.02 2.46 16 17 C 0.01 0.49 5.47 84.66 0.46 0.96 16 18 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 19 Si 0.95 43.97 27.47 68.60 1.88 45.86 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 23 C 0.05 1.51 5.61 86.31 0.48 1.99 16 24 C 0.07 1.55 5.61 86.31 0.48 2.03 16 25 C -0.03 -0.59 7.88 22.24 0.18 -0.41 16 26 C -0.21 -4.78 6.33 -20.22 -0.13 -4.90 16 27 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 32 H 0.11 1.17 7.96 -2.39 -0.02 1.15 16 33 H 0.05 0.78 8.05 -2.39 -0.02 0.76 16 34 H 0.04 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.08 2.15 5.94 -2.39 -0.01 2.13 16 36 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.05 2.46 6.79 -2.39 -0.02 2.45 16 38 H -0.02 -0.87 7.18 -2.39 -0.02 -0.89 16 39 H 0.03 1.39 7.45 -2.39 -0.02 1.38 16 40 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 41 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 43 H 0.11 1.72 8.07 -2.39 -0.02 1.70 16 44 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.15 2.20 7.96 -2.91 -0.02 2.17 16 Total: -1.00 -74.16 362.23 -0.56 -74.72 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: 0.92 Total: 7.15 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.99 Total: -13.46 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -8.72 Total: -110.98 kcal Atomic # 8 Polarization: -3.65 SS G_CDS: 0.36 Total: -3.29 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.86 kcal Total: -74.16 -0.56 -74.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001248701976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.148 kcal (2) G-P(sol) polarization free energy of solvation -74.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds