Wall clock time and date at job start Tue Mar 31 2020 11:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99549 * 2 1 4 4 H 1.48509 * 109.47128 * 269.99841 * 3 2 1 5 5 H 1.48500 * 109.47657 * 29.99666 * 3 2 1 6 6 H 1.48499 * 109.47405 * 149.99775 * 3 2 1 7 7 C 1.37874 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99813 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00145 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47356 * 179.97438 * 9 7 2 11 11 C 1.47907 * 111.00067 * 52.47868 * 10 9 7 12 12 C 1.54078 * 107.03052 * 145.70310 * 11 10 9 13 13 C 1.54160 * 105.00420 * 358.28609 * 12 11 10 14 14 H 1.08994 * 109.83229 * 96.07494 * 13 12 11 15 15 C 1.48766 * 111.00190 * 170.00117 * 10 9 7 16 16 H 1.08997 * 112.55587 * 80.39796 * 15 10 9 17 17 C 1.53114 * 107.93209 * 316.84638 * 15 10 9 18 18 C 1.52906 * 109.29221 * 184.03611 * 17 15 10 19 19 C 1.50332 * 109.35320 * 52.63907 * 18 17 15 20 20 O 1.21272 * 118.77025 * 158.43629 * 19 18 17 21 21 N 1.33450 * 122.48690 * 338.17342 * 19 18 17 22 22 C 1.46495 * 117.40174 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.46871 * 270.52013 * 22 21 19 24 24 C 1.38648 * 120.79066 * 269.71533 * 23 22 21 25 25 C 1.38204 * 119.16561 * 179.75748 * 24 23 22 26 26 N 1.31875 * 120.75959 * 0.53492 * 25 24 23 27 27 C 1.31868 * 121.72477 * 359.74004 * 26 25 24 28 28 C 1.38207 * 120.76583 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47172 * 60.00251 * 9 7 2 31 31 H 1.08995 * 109.47287 * 300.00291 * 9 7 2 32 32 H 1.09003 * 109.91907 * 26.36048 * 11 10 9 33 33 H 1.09004 * 109.92248 * 265.04966 * 11 10 9 34 34 H 1.08995 * 110.33935 * 239.40537 * 12 11 10 35 35 H 1.09005 * 110.42208 * 117.20683 * 12 11 10 36 36 H 1.09006 * 109.50170 * 64.09550 * 17 15 10 37 37 H 1.09000 * 109.53433 * 303.99899 * 17 15 10 38 38 H 1.08997 * 109.49062 * 172.59852 * 18 17 15 39 39 H 1.08994 * 109.48841 * 292.67919 * 18 17 15 40 40 H 1.09003 * 109.47235 * 30.51512 * 22 21 19 41 41 H 1.08997 * 109.47030 * 150.52248 * 22 21 19 42 42 H 1.08001 * 120.41467 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.61814 * 180.25211 * 25 24 23 44 44 H 1.07999 * 119.61625 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.41333 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0013 11 6 3.3848 -3.3602 -1.0927 12 6 4.4466 -4.3619 -1.5858 13 6 5.6993 -4.0655 -0.7376 14 1 5.7409 -4.7477 0.1114 15 6 5.4685 -2.6258 -0.2403 16 1 6.0473 -2.4129 0.6584 17 6 5.7928 -1.6391 -1.3654 18 6 7.2797 -1.7352 -1.7086 19 6 7.6361 -3.1697 -1.9824 20 8 8.6271 -3.4099 -2.6388 21 7 6.9059 -4.1893 -1.5262 22 6 7.3553 -5.5431 -1.8602 23 6 6.7351 -5.9705 -3.1655 24 6 5.5164 -6.6312 -3.1895 25 6 4.9759 -7.0034 -4.4058 26 7 5.6104 -6.7463 -5.5328 27 6 6.7734 -6.1249 -5.5476 28 6 7.3724 -5.7176 -4.3705 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.6795 0.8895 31 1 3.8746 -0.6807 -0.8904 32 1 3.0952 -2.6953 -1.9065 33 1 2.5125 -3.8971 -0.7199 34 1 4.6580 -4.2003 -2.6428 35 1 4.1102 -5.3854 -1.4196 36 1 5.5595 -0.6255 -1.0389 37 1 5.1994 -1.8832 -2.2465 38 1 7.4884 -1.1334 -2.5931 39 1 7.8710 -1.3673 -0.8701 40 1 8.4413 -5.5527 -1.9536 41 1 7.0523 -6.2314 -1.0713 42 1 4.9940 -6.8484 -2.2695 43 1 4.0250 -7.5148 -4.4332 44 1 7.2636 -5.9321 -6.4904 45 1 8.3248 -5.2087 -4.3893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:17 Heat of formation + Delta-G solvation = 24.049712 kcal Electronic energy + Delta-G solvation = -27416.717984 eV Core-core repulsion = 23820.445367 eV Total energy + Delta-G solvation = -3596.272617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31607 -39.99693 -38.56060 -35.81961 -33.86142 -32.78587 -32.38782 -31.38162 -30.70271 -28.16561 -27.17522 -26.55861 -23.92898 -23.58912 -22.70972 -22.24357 -21.44569 -19.63520 -18.20141 -17.24125 -16.98534 -16.68826 -16.31332 -16.27420 -15.95815 -15.52284 -14.98210 -14.46775 -14.34118 -13.99593 -13.90592 -13.77115 -13.52372 -13.25370 -12.94713 -12.70971 -12.69344 -12.28536 -12.22961 -11.82311 -11.50931 -11.43836 -11.38410 -11.25208 -10.78164 -10.77543 -10.51845 -10.31443 -9.95981 -9.88295 -9.68383 -9.45576 -9.29947 -9.23531 -8.83533 -8.68368 -7.62160 -6.14766 -4.13362 1.02001 1.05388 2.54264 2.91046 3.20494 3.29205 3.29655 3.74771 4.32707 4.33647 4.34703 4.42697 4.50379 4.64857 4.68718 4.78279 4.94072 4.98869 5.03239 5.16299 5.18730 5.21312 5.25950 5.34964 5.42370 5.49833 5.58349 5.61053 5.69353 5.73430 5.82954 5.84484 5.96508 6.07805 6.20246 6.26056 6.33745 6.48180 6.49943 6.58602 6.69671 6.88844 7.31835 7.38459 7.70327 7.79638 7.85265 8.05722 8.49894 8.91436 9.46030 10.98072 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.004105 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.866752 B = 6819.932555 C = 7586.699195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.873 3.127 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.081 0.919 9 C 0.148 3.852 10 N -0.498 5.498 11 C 0.055 3.945 12 C -0.144 4.144 13 C 0.142 3.858 14 H 0.093 0.907 15 C 0.058 3.942 16 H 0.098 0.902 17 C -0.155 4.155 18 C -0.132 4.132 19 C 0.524 3.476 20 O -0.556 6.556 21 N -0.586 5.586 22 C 0.144 3.856 23 C -0.059 4.059 24 C -0.156 4.156 25 C 0.093 3.907 26 N -0.485 5.485 27 C 0.091 3.909 28 C -0.150 4.150 29 H 0.265 0.735 30 H 0.032 0.968 31 H -0.002 1.002 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.915 -11.216 -4.328 19.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.700 3.300 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.099 0.901 9 C 0.021 3.979 10 N -0.221 5.221 11 C -0.073 4.073 12 C -0.183 4.183 13 C 0.037 3.963 14 H 0.111 0.889 15 C -0.051 4.051 16 H 0.116 0.884 17 C -0.194 4.194 18 C -0.172 4.172 19 C 0.313 3.687 20 O -0.434 6.434 21 N -0.317 5.317 22 C 0.021 3.979 23 C -0.069 4.069 24 C -0.176 4.176 25 C -0.064 4.064 26 N -0.194 5.194 27 C -0.065 4.065 28 C -0.170 4.170 29 H 0.074 0.926 30 H 0.050 0.950 31 H 0.016 0.984 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.108 0.892 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.170 0.830 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 14.723 -11.639 -4.900 19.397 hybrid contribution 0.676 1.699 0.003 1.828 sum 15.399 -9.940 -4.897 18.971 Atomic orbital electron populations 1.69884 1.06164 1.26980 1.50556 1.24890 0.94716 0.98856 0.94634 0.86894 0.80472 0.84095 0.78511 1.20314 1.21072 1.19022 1.21038 0.88613 0.94881 1.51064 0.90130 1.20488 0.97060 0.84581 0.95748 1.64825 0.99710 1.15313 1.42229 1.22631 0.96458 0.94717 0.93479 1.23038 0.95256 1.00480 0.99571 1.21524 0.83035 0.98619 0.93086 0.88871 1.22938 0.93464 0.91841 0.96848 0.88376 1.22320 0.94332 1.02528 1.00174 1.21628 0.98474 0.92712 1.04399 1.20315 0.82291 0.87893 0.78179 1.90657 1.27324 1.85502 1.39953 1.47071 1.26367 1.05616 1.52663 1.20431 1.00662 0.83800 0.93030 1.20606 0.94662 0.95563 0.96049 1.22167 0.95871 0.99518 1.00069 1.22749 0.99188 0.96795 0.87637 1.67659 1.08624 1.12260 1.30861 1.22758 0.91474 0.94196 0.98122 1.22225 1.01926 1.00055 0.92795 0.92552 0.94993 0.98423 0.92978 0.90266 0.91563 0.90925 0.89391 0.90997 0.88402 0.88261 0.88337 0.89190 0.84584 0.82780 0.82983 0.84255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.55 13.96 55.43 0.77 -25.78 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.52 -13.79 8.97 -34.44 -0.31 -14.10 16 8 H 0.08 2.33 7.08 -52.48 -0.37 1.96 16 9 C 0.15 3.25 3.24 -4.98 -0.02 3.23 16 10 N -0.50 -9.11 5.38 -224.30 -1.21 -10.31 16 11 C 0.06 0.95 4.79 -2.71 -0.01 0.94 16 12 C -0.14 -1.87 4.30 -25.56 -0.11 -1.98 16 13 C 0.14 1.71 3.12 -67.75 -0.21 1.50 16 14 H 0.09 1.01 8.03 -51.93 -0.42 0.60 16 15 C 0.06 0.84 3.45 -66.07 -0.23 0.61 16 16 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.15 -2.19 3.94 -26.72 -0.11 -2.30 16 18 C -0.13 -1.61 6.07 -28.11 -0.17 -1.78 16 19 C 0.52 6.99 7.46 -11.75 -0.09 6.91 16 20 O -0.56 -8.58 15.22 5.56 0.08 -8.50 16 21 N -0.59 -6.86 2.48 -168.01 -0.42 -7.28 16 22 C 0.14 1.45 5.29 -5.19 -0.03 1.42 16 23 C -0.06 -0.64 4.91 -104.32 -0.51 -1.15 16 24 C -0.16 -1.56 7.66 -39.44 -0.30 -1.86 16 25 C 0.09 1.01 11.18 -17.55 -0.20 0.81 16 26 N -0.48 -6.08 10.36 -13.25 -0.14 -6.22 16 27 C 0.09 1.04 11.18 -17.55 -0.20 0.85 16 28 C -0.15 -1.71 9.59 -39.44 -0.38 -2.09 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 31 H 0.00 -0.04 4.99 -51.93 -0.26 -0.30 16 32 H 0.05 1.01 7.37 -51.93 -0.38 0.63 16 33 H 0.08 1.44 7.73 -51.93 -0.40 1.04 16 34 H 0.07 0.93 7.21 -51.93 -0.37 0.55 16 35 H 0.07 0.80 6.47 -51.93 -0.34 0.46 16 36 H 0.09 1.34 6.33 -51.93 -0.33 1.01 16 37 H 0.07 1.12 6.91 -51.93 -0.36 0.76 16 38 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.04 7.12 -51.93 -0.37 0.67 16 41 H 0.09 0.70 7.87 -51.93 -0.41 0.29 16 42 H 0.14 1.11 6.53 -52.49 -0.34 0.77 16 43 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.14 1.62 7.29 -52.48 -0.38 1.24 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -31.17 343.23 -9.75 -40.92 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -6.39 Total: 3.29 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: -2.96 Total: -7.12 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: -0.99 Total: -49.59 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.17 -9.75 -40.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.969 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds