Wall clock time and date at job start Tue Mar 31 2020 11:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99549 * 2 1 4 4 H 1.48509 * 109.47128 * 269.99841 * 3 2 1 5 5 H 1.48500 * 109.47657 * 29.99666 * 3 2 1 6 6 H 1.48499 * 109.47405 * 149.99775 * 3 2 1 7 7 C 1.37874 * 120.00350 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99813 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00145 * 179.97438 * 7 2 1 10 10 N 1.46898 * 109.47356 * 179.97438 * 9 7 2 11 11 C 1.47907 * 111.00067 * 52.47868 * 10 9 7 12 12 C 1.54078 * 107.03052 * 145.70310 * 11 10 9 13 13 C 1.54160 * 105.00420 * 358.28609 * 12 11 10 14 14 H 1.08994 * 109.83229 * 96.07494 * 13 12 11 15 15 C 1.48766 * 111.00190 * 170.00117 * 10 9 7 16 16 H 1.08997 * 112.55587 * 80.39796 * 15 10 9 17 17 C 1.53114 * 107.93209 * 316.84638 * 15 10 9 18 18 C 1.52906 * 109.29221 * 184.03611 * 17 15 10 19 19 C 1.50332 * 109.35320 * 52.63907 * 18 17 15 20 20 O 1.21272 * 118.77025 * 158.43629 * 19 18 17 21 21 N 1.33450 * 122.48690 * 338.17342 * 19 18 17 22 22 C 1.46495 * 117.40174 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.46871 * 270.52013 * 22 21 19 24 24 C 1.38648 * 120.79066 * 269.71533 * 23 22 21 25 25 C 1.38204 * 119.16561 * 179.75748 * 24 23 22 26 26 N 1.31875 * 120.75959 * 0.53492 * 25 24 23 27 27 C 1.31868 * 121.72477 * 359.74004 * 26 25 24 28 28 C 1.38207 * 120.76583 * 359.97438 * 27 26 25 29 29 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47172 * 60.00251 * 9 7 2 31 31 H 1.08995 * 109.47287 * 300.00291 * 9 7 2 32 32 H 1.09003 * 109.91907 * 26.36048 * 11 10 9 33 33 H 1.09004 * 109.92248 * 265.04966 * 11 10 9 34 34 H 1.08995 * 110.33935 * 239.40537 * 12 11 10 35 35 H 1.09005 * 110.42208 * 117.20683 * 12 11 10 36 36 H 1.09006 * 109.50170 * 64.09550 * 17 15 10 37 37 H 1.09000 * 109.53433 * 303.99899 * 17 15 10 38 38 H 1.08997 * 109.49062 * 172.59852 * 18 17 15 39 39 H 1.08994 * 109.48841 * 292.67919 * 18 17 15 40 40 H 1.09003 * 109.47235 * 30.51512 * 22 21 19 41 41 H 1.08997 * 109.47030 * 150.52248 * 22 21 19 42 42 H 1.08001 * 120.41467 * 0.02562 * 24 23 22 43 43 H 1.08000 * 119.61814 * 180.25211 * 25 24 23 44 44 H 1.07999 * 119.61625 * 179.97438 * 27 26 25 45 45 H 1.08005 * 120.41333 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0000 10 7 4.0013 -2.5789 0.0013 11 6 3.3848 -3.3602 -1.0927 12 6 4.4466 -4.3619 -1.5858 13 6 5.6993 -4.0655 -0.7376 14 1 5.7409 -4.7477 0.1114 15 6 5.4685 -2.6258 -0.2403 16 1 6.0473 -2.4129 0.6584 17 6 5.7928 -1.6391 -1.3654 18 6 7.2797 -1.7352 -1.7086 19 6 7.6361 -3.1697 -1.9824 20 8 8.6271 -3.4099 -2.6388 21 7 6.9059 -4.1893 -1.5262 22 6 7.3553 -5.5431 -1.8602 23 6 6.7351 -5.9705 -3.1655 24 6 5.5164 -6.6312 -3.1895 25 6 4.9759 -7.0034 -4.4058 26 7 5.6104 -6.7463 -5.5328 27 6 6.7734 -6.1249 -5.5476 28 6 7.3724 -5.7176 -4.3705 29 1 -0.4850 0.8400 -0.0004 30 1 3.8753 -0.6795 0.8895 31 1 3.8746 -0.6807 -0.8904 32 1 3.0952 -2.6953 -1.9065 33 1 2.5125 -3.8971 -0.7199 34 1 4.6580 -4.2003 -2.6428 35 1 4.1102 -5.3854 -1.4196 36 1 5.5595 -0.6255 -1.0389 37 1 5.1994 -1.8832 -2.2465 38 1 7.4884 -1.1334 -2.5931 39 1 7.8710 -1.3673 -0.8701 40 1 8.4413 -5.5527 -1.9536 41 1 7.0523 -6.2314 -1.0713 42 1 4.9940 -6.8484 -2.2695 43 1 4.0250 -7.5148 -4.4332 44 1 7.2636 -5.9321 -6.4904 45 1 8.3248 -5.2087 -4.3893 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:17 Heat of formation + Delta-G solvation = 2.903386 kcal Electronic energy + Delta-G solvation = -27417.634957 eV Core-core repulsion = 23820.445367 eV Total energy + Delta-G solvation = -3597.189590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.34507 -40.88505 -39.75952 -36.88489 -35.20779 -34.42519 -33.46809 -32.33609 -31.97613 -29.45589 -28.48284 -27.74105 -24.99631 -24.60783 -24.09876 -23.27568 -22.52448 -21.08522 -19.26210 -18.81595 -18.15612 -17.83649 -17.26602 -17.22641 -17.00277 -16.45436 -16.22355 -16.11571 -15.61021 -15.20908 -14.92333 -14.71775 -14.62801 -14.55465 -14.45918 -13.96412 -13.74498 -13.58734 -13.23542 -13.10780 -12.89258 -12.70325 -12.54689 -12.38216 -12.28039 -12.00627 -11.90485 -11.79701 -11.59870 -11.29284 -10.92563 -10.78192 -10.55733 -10.40964 -10.05641 -9.80172 -9.11235 -8.27533 -6.30532 0.20040 0.21971 1.34860 1.37128 1.46866 1.53024 1.96120 2.34683 2.90478 3.06384 3.19154 3.39360 3.53470 3.58111 3.64311 3.71652 3.82494 3.92285 4.10198 4.10876 4.20193 4.25559 4.26541 4.39639 4.45368 4.48348 4.63399 4.72318 4.75473 4.77884 4.81308 4.84456 4.89330 4.97922 5.03029 5.08102 5.11049 5.21147 5.26194 5.38897 5.42407 5.53609 5.78694 5.93979 6.16533 6.37855 6.56273 6.76463 7.02457 7.05769 7.33070 8.88697 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017292 B = 0.004105 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.866752 B = 6819.932555 C = 7586.699195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.519 4.519 8 H 0.041 0.959 9 C 0.158 3.842 10 N -0.508 5.508 11 C 0.058 3.942 12 C -0.128 4.128 13 C 0.153 3.847 14 H 0.122 0.878 15 C 0.056 3.944 16 H 0.117 0.883 17 C -0.149 4.149 18 C -0.125 4.125 19 C 0.520 3.480 20 O -0.578 6.578 21 N -0.580 5.580 22 C 0.143 3.857 23 C -0.065 4.065 24 C -0.152 4.152 25 C 0.082 3.918 26 N -0.511 5.511 27 C 0.080 3.920 28 C -0.159 4.159 29 H 0.265 0.735 30 H 0.033 0.967 31 H 0.004 0.996 32 H 0.020 0.980 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.051 0.949 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.094 0.906 41 H 0.122 0.878 42 H 0.160 0.840 43 H 0.174 0.826 44 H 0.166 0.834 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.193 -11.679 -3.448 21.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.558 4.558 8 H 0.060 0.940 9 C 0.031 3.969 10 N -0.231 5.231 11 C -0.070 4.070 12 C -0.167 4.167 13 C 0.048 3.952 14 H 0.139 0.861 15 C -0.052 4.052 16 H 0.134 0.866 17 C -0.188 4.188 18 C -0.165 4.165 19 C 0.310 3.690 20 O -0.459 6.459 21 N -0.310 5.310 22 C 0.021 3.979 23 C -0.074 4.074 24 C -0.172 4.172 25 C -0.075 4.075 26 N -0.221 5.221 27 C -0.076 4.076 28 C -0.180 4.180 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.112 0.888 41 H 0.140 0.860 42 H 0.178 0.822 43 H 0.191 0.809 44 H 0.184 0.816 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.024 -12.130 -4.017 21.286 hybrid contribution -0.094 1.744 -0.299 1.771 sum 16.930 -10.387 -4.315 20.325 Atomic orbital electron populations 1.70047 1.08192 1.27996 1.52701 1.25807 0.95491 1.03029 0.94458 0.85819 0.79935 0.78925 0.78959 1.19658 1.21154 1.16422 1.21340 0.91288 0.93367 1.49762 0.94048 1.20225 0.93823 0.87048 0.95806 1.64676 1.02437 1.13110 1.42925 1.22511 0.97460 0.94920 0.92128 1.22915 0.94308 1.00538 0.98939 1.21465 0.82598 0.97581 0.93539 0.86072 1.23089 0.90740 0.93570 0.97846 0.86553 1.22191 0.95549 1.01840 0.99217 1.21600 0.97000 0.92443 1.05451 1.20486 0.82158 0.88496 0.77885 1.90659 1.28436 1.85830 1.40994 1.47021 1.25745 1.06170 1.52061 1.20594 1.00450 0.83255 0.93569 1.20764 0.94954 0.95570 0.96117 1.22382 0.95477 0.98635 1.00662 1.23174 0.99879 0.96739 0.87684 1.67675 1.09255 1.13150 1.31987 1.23024 0.91470 0.94186 0.98948 1.22263 1.01927 1.00418 0.93362 0.92580 0.94916 0.97801 0.96177 0.92086 0.92439 0.88110 0.90312 0.93006 0.88049 0.86107 0.88753 0.86015 0.82214 0.80936 0.81643 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 2 C 0.01 0.53 5.47 84.65 0.46 1.00 16 3 Si 0.94 42.13 27.47 68.60 1.88 44.02 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 7 C -0.52 -28.33 8.97 25.60 0.23 -28.10 16 8 H 0.04 2.52 7.08 -2.91 -0.02 2.49 16 9 C 0.16 6.86 3.24 85.56 0.28 7.13 16 10 N -0.51 -18.05 5.38 -863.55 -4.64 -22.69 16 11 C 0.06 2.00 4.79 86.47 0.41 2.41 16 12 C -0.13 -3.01 4.30 31.35 0.13 -2.88 16 13 C 0.15 3.15 3.12 46.08 0.14 3.29 16 14 H 0.12 1.98 8.03 -2.39 -0.02 1.96 16 15 C 0.06 1.46 3.45 44.95 0.15 1.62 16 16 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 17 C -0.15 -3.94 3.94 30.60 0.12 -3.82 16 18 C -0.12 -2.72 6.07 29.70 0.18 -2.54 16 19 C 0.52 12.56 7.46 87.75 0.65 13.21 16 20 O -0.58 -16.77 15.22 -3.00 -0.05 -16.81 16 21 N -0.58 -11.70 2.48 -804.58 -2.00 -13.69 16 22 C 0.14 2.40 5.29 85.64 0.45 2.85 16 23 C -0.06 -1.24 4.91 -19.67 -0.10 -1.34 16 24 C -0.15 -2.62 7.66 22.36 0.17 -2.44 16 25 C 0.08 1.63 11.18 84.68 0.95 2.58 16 26 N -0.51 -12.38 10.36 -195.84 -2.03 -14.40 16 27 C 0.08 1.78 11.18 84.68 0.95 2.72 16 28 C -0.16 -3.48 9.59 22.36 0.21 -3.26 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.03 1.42 7.20 -2.38 -0.02 1.41 16 31 H 0.00 0.19 4.99 -2.39 -0.01 0.18 16 32 H 0.02 0.80 7.37 -2.39 -0.02 0.78 16 33 H 0.06 2.27 7.73 -2.38 -0.02 2.26 16 34 H 0.06 1.50 7.21 -2.39 -0.02 1.48 16 35 H 0.10 1.84 6.47 -2.38 -0.02 1.82 16 36 H 0.08 2.23 6.33 -2.38 -0.02 2.22 16 37 H 0.05 1.57 6.91 -2.39 -0.02 1.56 16 38 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.09 1.73 7.12 -2.39 -0.02 1.72 16 41 H 0.12 1.29 7.87 -2.39 -0.02 1.27 16 42 H 0.16 1.92 6.53 -2.91 -0.02 1.90 16 43 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 44 H 0.17 2.96 8.06 -2.91 -0.02 2.94 16 45 H 0.13 3.03 7.29 -2.91 -0.02 3.01 16 Total: -1.00 -69.93 343.23 -0.18 -70.11 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.94 Total: 18.66 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.41 Total: -7.56 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -8.37 Total: -108.41 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.05 Total: -16.81 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 1.88 Total: 44.02 kcal Total: -69.93 -0.18 -70.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.016 kcal (2) G-P(sol) polarization free energy of solvation -69.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds