Wall clock time and date at job start Tue Mar 31 2020 11:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.47964 * 110.99955 * 290.78284 * 10 9 7 12 12 C 1.55134 * 104.94336 * 213.89197 * 11 10 9 13 13 C 1.53883 * 101.52356 * 35.80005 * 12 11 10 14 14 C 1.53376 * 111.13541 * 205.20018 * 13 12 11 15 15 C 1.54767 * 101.44281 * 262.15329 * 14 13 12 16 16 N 1.46900 * 105.53031 * 335.69296 * 15 14 13 17 17 C 1.46511 * 124.37435 * 196.77763 * 16 15 14 18 18 C 1.50702 * 109.46874 * 270.02173 * 17 16 15 19 19 C 1.38647 * 120.79319 * 269.71826 * 18 17 16 20 20 C 1.38204 * 119.16529 * 179.75775 * 19 18 17 21 21 N 1.31872 * 120.75910 * 0.52668 * 20 19 18 22 22 C 1.31865 * 121.72841 * 359.74825 * 21 20 19 23 23 C 1.38205 * 120.76606 * 359.97305 * 22 21 20 24 24 C 1.34827 * 111.25310 * 16.77379 * 16 15 14 25 25 O 1.21290 * 125.18604 * 178.82804 * 24 16 15 26 26 C 1.47758 * 111.00370 * 170.00069 * 10 9 7 27 27 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 29 29 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 30 30 H 1.08996 * 110.34890 * 332.76241 * 11 10 9 31 31 H 1.09008 * 110.34700 * 95.02559 * 11 10 9 32 32 H 1.08999 * 111.01215 * 277.74200 * 12 11 10 33 33 H 1.08994 * 111.01406 * 153.86014 * 12 11 10 34 34 H 1.09006 * 111.03277 * 20.19458 * 14 13 12 35 35 H 1.08995 * 111.03143 * 144.11544 * 14 13 12 36 36 H 1.08998 * 110.23314 * 216.67662 * 15 14 13 37 37 H 1.09001 * 110.30429 * 94.74308 * 15 14 13 38 38 H 1.08997 * 109.46516 * 30.01972 * 17 16 15 39 39 H 1.08998 * 109.47073 * 150.02332 * 17 16 15 40 40 H 1.08001 * 120.41667 * 0.02562 * 19 18 17 41 41 H 1.07999 * 119.61987 * 180.25040 * 20 19 18 42 42 H 1.07999 * 119.61461 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.42079 * 180.02562 * 23 22 21 44 44 H 1.08992 * 109.98261 * 243.47046 * 26 10 9 45 45 H 1.09010 * 109.97256 * 4.75259 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.7154 -3.2425 1.2912 12 6 4.9113 -4.2038 1.5203 13 6 6.0776 -3.3887 0.9342 14 6 7.2170 -4.3063 0.4734 15 6 8.1773 -4.2354 1.6851 16 7 7.8759 -2.9617 2.3519 17 6 8.7562 -2.3082 3.3238 18 6 8.4168 -2.7884 4.7113 19 6 7.4753 -2.1235 5.4820 20 6 7.1862 -2.5960 6.7482 21 7 7.8016 -3.6591 7.2281 22 6 8.7061 -4.3129 6.5258 23 6 9.0428 -3.9022 5.2498 24 6 6.6845 -2.4716 1.9540 25 8 6.1802 -1.4457 2.3592 26 6 5.4587 -2.6253 -0.2390 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 -0.8894 29 1 3.8746 -0.6807 0.8905 30 1 3.6626 -2.5056 2.0925 31 1 2.7835 -3.8047 1.2302 32 1 4.7731 -5.1368 0.9739 33 1 5.0622 -4.3936 2.5829 34 1 6.8602 -5.3242 0.3160 35 1 7.6932 -3.9169 -0.4263 36 1 9.2132 -4.2478 1.3463 37 1 7.9929 -5.0688 2.3631 38 1 9.7935 -2.5548 3.0975 39 1 8.6192 -1.2282 3.2694 40 1 6.9710 -1.2499 5.0960 41 1 6.4511 -2.0862 7.3532 42 1 9.1893 -5.1792 6.9526 43 1 9.7841 -4.4420 4.6794 44 1 5.6665 -3.1464 -1.1735 45 1 5.8619 -1.6133 -0.2790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274032597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:57 Heat of formation + Delta-G solvation = 21.037043 kcal Electronic energy + Delta-G solvation = -26819.427333 eV Core-core repulsion = 23223.024077 eV Total energy + Delta-G solvation = -3596.403256 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.25036 -40.24595 -37.58976 -36.49497 -34.47333 -32.80452 -31.60805 -31.44914 -29.88770 -28.37785 -27.21336 -26.77893 -23.82332 -23.44568 -22.69871 -22.13098 -21.08142 -20.00806 -18.98098 -17.24679 -16.74428 -16.62743 -16.59687 -15.91946 -15.83272 -15.50594 -14.76136 -14.55152 -14.15135 -13.94627 -13.85570 -13.79679 -13.47453 -13.40561 -12.89587 -12.70630 -12.58109 -12.49574 -12.22549 -12.04933 -11.82258 -11.67161 -11.36801 -10.99482 -10.88887 -10.52667 -10.51254 -10.09450 -10.05205 -9.81326 -9.69928 -9.50042 -9.39633 -9.16597 -8.92028 -8.49348 -7.35534 -5.97311 -3.93530 0.86562 0.91138 2.56140 2.83119 3.36912 3.42832 3.47493 3.62779 4.13910 4.21489 4.28793 4.31672 4.46426 4.50919 4.52803 4.72407 4.79371 4.86701 4.97324 5.05141 5.07371 5.18175 5.23440 5.32122 5.38751 5.38997 5.55089 5.60401 5.65078 5.70061 5.75419 5.81517 5.95306 6.02616 6.10031 6.20620 6.36043 6.44882 6.58037 6.64308 6.89320 6.92303 7.11679 7.65936 7.71826 7.94557 8.02913 8.16297 8.73233 9.11415 9.65587 11.16036 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.003836 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.370102 B = 7297.051369 C = 8092.159932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.874 3.126 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.505 4.505 8 H 0.079 0.921 9 C 0.157 3.843 10 N -0.512 5.512 11 C 0.059 3.941 12 C -0.105 4.105 13 C -0.117 4.117 14 C -0.117 4.117 15 C 0.105 3.895 16 N -0.623 5.623 17 C 0.166 3.834 18 C -0.065 4.065 19 C -0.148 4.148 20 C 0.098 3.902 21 N -0.484 5.484 22 C 0.093 3.907 23 C -0.161 4.161 24 C 0.533 3.467 25 O -0.506 6.506 26 C 0.065 3.935 27 H 0.262 0.738 28 H 0.024 0.976 29 H -0.004 1.004 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.139 0.861 41 H 0.157 0.843 42 H 0.155 0.845 43 H 0.133 0.867 44 H 0.078 0.922 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.509 -11.043 7.497 27.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.543 4.543 8 H 0.097 0.903 9 C 0.030 3.970 10 N -0.236 5.236 11 C -0.069 4.069 12 C -0.144 4.144 13 C -0.121 4.121 14 C -0.155 4.155 15 C -0.018 4.018 16 N -0.359 5.359 17 C 0.044 3.956 18 C -0.074 4.074 19 C -0.169 4.169 20 C -0.058 4.058 21 N -0.194 5.194 22 C -0.064 4.064 23 C -0.181 4.181 24 C 0.320 3.680 25 O -0.379 6.379 26 C -0.064 4.064 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.013 0.987 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.157 0.843 41 H 0.174 0.826 42 H 0.172 0.828 43 H 0.150 0.850 44 H 0.096 0.904 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.640 -10.836 8.179 26.398 hybrid contribution 1.076 1.666 -0.111 1.986 sum 23.715 -9.171 8.067 26.676 Atomic orbital electron populations 1.69896 1.06076 1.26699 1.51552 1.24873 0.94710 0.98781 0.94923 0.86870 0.80279 0.84098 0.78576 1.20300 1.21253 1.19263 1.21029 0.88784 0.94667 1.49869 0.90274 1.20397 0.97015 0.84204 0.95396 1.63760 1.09113 1.19841 1.30877 1.22930 0.96830 0.95711 0.91411 1.22581 0.93254 0.98522 1.00028 1.21802 0.96699 0.96657 0.96981 1.22551 0.94729 1.00937 0.97326 1.22149 0.99898 0.85526 0.94196 1.48435 1.20639 1.23923 1.42867 1.20225 0.93801 0.98355 0.83235 1.20716 0.95439 0.94977 0.96284 1.22251 0.97636 1.01577 0.95398 1.22824 0.97086 0.92376 0.93515 1.67680 1.07368 1.07372 1.36932 1.22743 0.93963 0.98426 0.91288 1.22018 1.01522 0.97303 0.97285 1.20497 0.80328 0.85288 0.81849 1.90763 1.64326 1.24040 1.58724 1.22631 0.90100 0.98526 0.95143 0.92783 0.95776 0.98675 0.93166 0.90282 0.89734 0.91662 0.88750 0.89632 0.90462 0.91343 0.89119 0.88782 0.84267 0.82563 0.82822 0.84957 0.90357 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.54 13.96 55.43 0.77 -27.76 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 22.80 27.47 -169.99 -4.67 18.13 16 4 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.27 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.51 -15.01 9.36 -34.44 -0.32 -15.33 16 8 H 0.08 2.53 8.01 -52.49 -0.42 2.11 16 9 C 0.16 4.06 3.40 -4.98 -0.02 4.04 16 10 N -0.51 -11.12 5.17 -232.99 -1.20 -12.32 16 11 C 0.06 1.17 6.09 -2.11 -0.01 1.16 16 12 C -0.11 -1.53 6.02 -25.14 -0.15 -1.68 16 13 C -0.12 -1.63 0.66 -155.33 -0.10 -1.73 16 14 C -0.12 -1.04 6.15 -25.61 -0.16 -1.20 16 15 C 0.11 0.81 7.37 -2.89 -0.02 0.78 16 16 N -0.62 -6.83 2.93 -173.92 -0.51 -7.34 16 17 C 0.17 1.53 6.12 -5.19 -0.03 1.50 16 18 C -0.06 -0.64 5.50 -104.32 -0.57 -1.22 16 19 C -0.15 -1.71 9.82 -39.44 -0.39 -2.09 16 20 C 0.10 1.11 11.18 -17.55 -0.20 0.92 16 21 N -0.48 -5.65 10.36 -13.25 -0.14 -5.79 16 22 C 0.09 0.86 11.18 -17.55 -0.20 0.66 16 23 C -0.16 -1.33 9.82 -39.44 -0.39 -1.72 16 24 C 0.53 8.17 6.59 -11.31 -0.07 8.10 16 25 O -0.51 -10.03 17.47 5.55 0.10 -9.94 16 26 C 0.07 1.12 5.95 -3.33 -0.02 1.10 16 27 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 28 H 0.02 0.64 7.10 -51.93 -0.37 0.27 16 29 H 0.00 -0.12 7.27 -51.93 -0.38 -0.50 16 30 H 0.05 1.13 7.62 -51.93 -0.40 0.74 16 31 H 0.08 1.60 8.14 -51.92 -0.42 1.18 16 32 H 0.08 1.05 7.76 -51.93 -0.40 0.65 16 33 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 34 H 0.09 0.69 7.62 -51.93 -0.40 0.29 16 35 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 39 H 0.09 0.98 7.91 -51.93 -0.41 0.57 16 40 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.16 1.48 8.06 -52.49 -0.42 1.05 16 42 H 0.15 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 44 H 0.08 1.18 7.79 -51.93 -0.40 0.77 16 45 H 0.05 0.96 7.24 -51.92 -0.38 0.58 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -36.35 366.08 -9.81 -46.16 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.93 Total: -1.91 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -2.75 Total: -4.74 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: -1.08 Total: -53.22 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.10 Total: -9.94 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.67 Total: 18.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.35 -9.81 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.197 kcal (2) G-P(sol) polarization free energy of solvation -36.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds