Wall clock time and date at job start Tue Mar 31 2020 11:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 N 1.46893 * 109.47161 * 179.97438 * 9 7 2 11 11 C 1.47964 * 110.99955 * 290.78284 * 10 9 7 12 12 C 1.55134 * 104.94336 * 213.89197 * 11 10 9 13 13 C 1.53883 * 101.52356 * 35.80005 * 12 11 10 14 14 C 1.53376 * 111.13541 * 205.20018 * 13 12 11 15 15 C 1.54767 * 101.44281 * 262.15329 * 14 13 12 16 16 N 1.46900 * 105.53031 * 335.69296 * 15 14 13 17 17 C 1.46511 * 124.37435 * 196.77763 * 16 15 14 18 18 C 1.50702 * 109.46874 * 270.02173 * 17 16 15 19 19 C 1.38647 * 120.79319 * 269.71826 * 18 17 16 20 20 C 1.38204 * 119.16529 * 179.75775 * 19 18 17 21 21 N 1.31872 * 120.75910 * 0.52668 * 20 19 18 22 22 C 1.31865 * 121.72841 * 359.74825 * 21 20 19 23 23 C 1.38205 * 120.76606 * 359.97305 * 22 21 20 24 24 C 1.34827 * 111.25310 * 16.77379 * 16 15 14 25 25 O 1.21290 * 125.18604 * 178.82804 * 24 16 15 26 26 C 1.47758 * 111.00370 * 170.00069 * 10 9 7 27 27 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 29 29 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 30 30 H 1.08996 * 110.34890 * 332.76241 * 11 10 9 31 31 H 1.09008 * 110.34700 * 95.02559 * 11 10 9 32 32 H 1.08999 * 111.01215 * 277.74200 * 12 11 10 33 33 H 1.08994 * 111.01406 * 153.86014 * 12 11 10 34 34 H 1.09006 * 111.03277 * 20.19458 * 14 13 12 35 35 H 1.08995 * 111.03143 * 144.11544 * 14 13 12 36 36 H 1.08998 * 110.23314 * 216.67662 * 15 14 13 37 37 H 1.09001 * 110.30429 * 94.74308 * 15 14 13 38 38 H 1.08997 * 109.46516 * 30.01972 * 17 16 15 39 39 H 1.08998 * 109.47073 * 150.02332 * 17 16 15 40 40 H 1.08001 * 120.41667 * 0.02562 * 19 18 17 41 41 H 1.07999 * 119.61987 * 180.25040 * 20 19 18 42 42 H 1.07999 * 119.61461 * 179.97438 * 22 21 20 43 43 H 1.07996 * 120.42079 * 180.02562 * 23 22 21 44 44 H 1.08992 * 109.98261 * 243.47046 * 26 10 9 45 45 H 1.09010 * 109.97256 * 4.75259 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 4.0013 -2.5789 -0.0001 11 6 3.7154 -3.2425 1.2912 12 6 4.9113 -4.2038 1.5203 13 6 6.0776 -3.3887 0.9342 14 6 7.2170 -4.3063 0.4734 15 6 8.1773 -4.2354 1.6851 16 7 7.8759 -2.9617 2.3519 17 6 8.7562 -2.3082 3.3238 18 6 8.4168 -2.7884 4.7113 19 6 7.4753 -2.1235 5.4820 20 6 7.1862 -2.5960 6.7482 21 7 7.8016 -3.6591 7.2281 22 6 8.7061 -4.3129 6.5258 23 6 9.0428 -3.9022 5.2498 24 6 6.6845 -2.4716 1.9540 25 8 6.1802 -1.4457 2.3592 26 6 5.4587 -2.6253 -0.2390 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 -0.8894 29 1 3.8746 -0.6807 0.8905 30 1 3.6626 -2.5056 2.0925 31 1 2.7835 -3.8047 1.2302 32 1 4.7731 -5.1368 0.9739 33 1 5.0622 -4.3936 2.5829 34 1 6.8602 -5.3242 0.3160 35 1 7.6932 -3.9169 -0.4263 36 1 9.2132 -4.2478 1.3463 37 1 7.9929 -5.0688 2.3631 38 1 9.7935 -2.5548 3.0975 39 1 8.6192 -1.2282 3.2694 40 1 6.9710 -1.2499 5.0960 41 1 6.4511 -2.0862 7.3532 42 1 9.1893 -5.1792 6.9526 43 1 9.7841 -4.4420 4.6794 44 1 5.6665 -3.1464 -1.1735 45 1 5.8619 -1.6133 -0.2790 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032597.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:56 Heat of formation + Delta-G solvation = -5.894284 kcal Electronic energy + Delta-G solvation = -26820.595163 eV Core-core repulsion = 23223.024077 eV Total energy + Delta-G solvation = -3597.571086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.28290 -41.05281 -38.97557 -37.58050 -35.64548 -34.67692 -33.01883 -32.18770 -31.17221 -29.78276 -28.50605 -27.94078 -24.87091 -24.42917 -23.89076 -23.43797 -22.07580 -21.67262 -20.06998 -18.97271 -18.07787 -17.57286 -17.42466 -17.04937 -16.68642 -16.52271 -16.21687 -16.07300 -15.62752 -15.10279 -14.87983 -14.75892 -14.64765 -14.58771 -14.48772 -14.01304 -13.77133 -13.55369 -13.39611 -13.25154 -13.12393 -12.96888 -12.74062 -12.43796 -12.33537 -12.09010 -11.92778 -11.77108 -11.57197 -11.42300 -10.94397 -10.85591 -10.59869 -10.53759 -10.14197 -9.76285 -9.13483 -8.34846 -6.36793 0.12006 0.14570 1.25416 1.27313 1.38392 1.43739 2.01467 2.27580 2.86088 2.97962 3.16915 3.27898 3.48813 3.50291 3.53891 3.61000 3.73004 3.96033 4.05653 4.10495 4.16930 4.31358 4.33507 4.42075 4.51807 4.54029 4.59592 4.68580 4.72861 4.75454 4.80644 4.82801 4.87881 4.91432 4.96114 5.04392 5.11990 5.17418 5.22807 5.29164 5.48746 5.56065 5.72560 5.92047 6.01936 6.20462 6.55200 6.67962 6.96201 7.10968 7.26671 8.81902 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.003836 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.370102 B = 7297.051369 C = 8092.159932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.013 3.987 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.257 1.257 7 C -0.515 4.515 8 H 0.041 0.959 9 C 0.174 3.826 10 N -0.526 5.526 11 C 0.055 3.945 12 C -0.087 4.087 13 C -0.116 4.116 14 C -0.107 4.107 15 C 0.101 3.899 16 N -0.612 5.612 17 C 0.164 3.836 18 C -0.070 4.070 19 C -0.171 4.171 20 C 0.082 3.918 21 N -0.510 5.510 22 C 0.087 3.913 23 C -0.143 4.143 24 C 0.518 3.482 25 O -0.569 6.569 26 C 0.062 3.938 27 H 0.268 0.732 28 H 0.023 0.977 29 H -0.027 1.027 30 H 0.009 0.991 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.158 0.842 42 H 0.186 0.814 43 H 0.177 0.823 44 H 0.109 0.891 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.024 -13.630 6.636 31.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.203 1.203 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.553 4.553 8 H 0.060 0.940 9 C 0.047 3.953 10 N -0.249 5.249 11 C -0.073 4.073 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.144 4.144 15 C -0.020 4.020 16 N -0.345 5.345 17 C 0.042 3.958 18 C -0.079 4.079 19 C -0.192 4.192 20 C -0.074 4.074 21 N -0.219 5.219 22 C -0.070 4.070 23 C -0.163 4.163 24 C 0.306 3.694 25 O -0.448 6.448 26 C -0.067 4.067 27 H 0.077 0.923 28 H 0.041 0.959 29 H -0.009 1.009 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.140 0.860 35 H 0.119 0.881 36 H 0.136 0.864 37 H 0.105 0.895 38 H 0.155 0.845 39 H 0.089 0.911 40 H 0.132 0.868 41 H 0.175 0.825 42 H 0.203 0.797 43 H 0.194 0.806 44 H 0.127 0.873 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 27.205 -13.475 7.310 31.227 hybrid contribution -0.337 2.367 0.194 2.398 sum 26.868 -11.108 7.504 30.026 Atomic orbital electron populations 1.70023 1.07714 1.28065 1.52573 1.25737 0.95608 1.02685 0.94426 0.85816 0.79451 0.79546 0.78725 1.20335 1.19402 1.18064 1.21245 0.90897 0.93416 1.49734 0.94033 1.20024 0.94432 0.86865 0.94016 1.63651 1.12690 1.16913 1.31684 1.22873 0.99128 0.95816 0.89497 1.22508 0.90607 0.98273 1.01135 1.21777 0.98143 0.96851 0.95248 1.22646 0.92444 1.00910 0.98423 1.22527 1.01824 0.83930 0.93686 1.48529 1.19017 1.24709 1.42243 1.20410 0.95575 0.97224 0.82552 1.20862 0.95090 0.95534 0.96460 1.22195 0.99063 1.01712 0.96185 1.22879 0.97793 0.93000 0.93720 1.67696 1.08563 1.07695 1.37993 1.23386 0.93049 0.98793 0.91771 1.22387 1.01060 0.95999 0.96872 1.20885 0.81582 0.84793 0.82154 1.90734 1.66242 1.26884 1.60908 1.22764 0.87181 0.98567 0.98141 0.92289 0.95937 1.00885 0.97290 0.91846 0.86413 0.91007 0.85987 0.88059 0.86356 0.89454 0.84473 0.91093 0.86772 0.82456 0.79691 0.80609 0.87285 0.95230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.79 13.96 21.45 0.30 -61.49 16 2 C 0.01 0.82 5.47 84.65 0.46 1.28 16 3 Si 0.94 48.55 27.47 68.60 1.88 50.43 16 4 H -0.28 -14.28 7.11 99.48 0.71 -13.57 16 5 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.26 -12.67 6.54 99.48 0.65 -12.02 16 7 C -0.51 -32.26 9.36 25.60 0.24 -32.02 16 8 H 0.04 2.84 8.01 -2.92 -0.02 2.82 16 9 C 0.17 9.45 3.40 85.56 0.29 9.74 16 10 N -0.53 -23.51 5.17 -891.06 -4.60 -28.11 16 11 C 0.05 2.29 6.09 86.83 0.53 2.82 16 12 C -0.09 -2.39 6.02 31.62 0.19 -2.20 16 13 C -0.12 -2.97 0.66 -52.71 -0.03 -3.01 16 14 C -0.11 -1.29 6.15 31.32 0.19 -1.10 16 15 C 0.10 0.92 7.37 86.91 0.64 1.56 16 16 N -0.61 -11.49 2.93 -822.51 -2.41 -13.91 16 17 C 0.16 2.59 6.12 85.63 0.52 3.12 16 18 C -0.07 -1.26 5.50 -19.67 -0.11 -1.37 16 19 C -0.17 -4.14 9.82 22.36 0.22 -3.92 16 20 C 0.08 1.94 11.18 84.68 0.95 2.88 16 21 N -0.51 -11.51 10.36 -195.84 -2.03 -13.54 16 22 C 0.09 1.34 11.18 84.68 0.95 2.28 16 23 C -0.14 -1.76 9.82 22.36 0.22 -1.54 16 24 C 0.52 15.58 6.59 87.42 0.58 16.16 16 25 O -0.57 -23.97 17.47 -3.06 -0.05 -24.02 16 26 C 0.06 2.08 5.95 86.15 0.51 2.59 16 27 H 0.27 16.30 8.31 -92.71 -0.77 15.53 16 28 H 0.02 1.22 7.10 -2.39 -0.02 1.20 16 29 H -0.03 -1.54 7.27 -2.39 -0.02 -1.56 16 30 H 0.01 0.43 7.62 -2.39 -0.02 0.41 16 31 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.12 2.48 7.76 -2.39 -0.02 2.46 16 33 H 0.07 1.90 8.00 -2.39 -0.02 1.88 16 34 H 0.12 0.91 7.62 -2.38 -0.02 0.89 16 35 H 0.10 1.00 7.90 -2.39 -0.02 0.98 16 36 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.14 0.91 8.10 -2.39 -0.02 0.89 16 39 H 0.07 1.48 7.91 -2.39 -0.02 1.46 16 40 H 0.11 3.25 8.06 -2.91 -0.02 3.22 16 41 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 42 H 0.19 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 44 H 0.11 2.97 7.79 -2.39 -0.02 2.95 16 45 H 0.03 1.12 7.24 -2.38 -0.02 1.10 16 Total: -1.00 -88.43 366.08 0.35 -88.08 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: 0.92 Total: 5.27 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.35 Total: -2.72 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -8.74 Total: -117.04 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.05 Total: -24.02 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 1.88 Total: 50.43 kcal Total: -88.43 0.35 -88.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032597.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.188 kcal (2) G-P(sol) polarization free energy of solvation -88.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds