Wall clock time and date at job start Tue Mar 31 2020 11:03:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86800 * 119.99850 * 2 1
4 4 H 1.48497 * 109.47176 * 270.00315 * 3 2 1
5 5 H 1.48504 * 109.47241 * 29.99917 * 3 2 1
6 6 H 1.48495 * 109.47130 * 149.99870 * 3 2 1
7 7 C 1.37874 * 120.00293 * 180.02562 * 2 1 3
8 8 H 1.08004 * 119.99696 * 0.02562 * 7 2 1
9 9 C 1.50693 * 120.00105 * 179.97438 * 7 2 1
10 10 C 1.53003 * 109.47047 * 180.02562 * 9 7 2
11 11 N 1.46500 * 109.47122 * 174.84056 * 10 9 7
12 12 C 1.46886 * 124.36828 * 275.12430 * 11 10 9
13 13 C 1.54860 * 105.43913 * 163.10366 * 12 11 10
14 14 C 1.53614 * 101.44692 * 24.83384 * 13 12 11
15 15 C 1.53891 * 110.68122 * 96.40726 * 14 13 12
16 16 C 1.55319 * 101.54274 * 156.79951 * 15 14 13
17 17 C 1.54412 * 103.13235 * 325.41192 * 16 15 14
18 18 N 1.46729 * 111.40276 * 214.19685 * 14 13 12
19 19 C 1.38999 * 111.00101 * 94.57290 * 18 14 13
20 20 C 1.39136 * 119.70850 * 291.55322 * 19 18 14
21 21 C 1.38296 * 119.10065 * 179.97438 * 20 19 18
22 22 C 1.38887 * 118.50151 * 0.02562 * 21 20 19
23 23 C 1.38023 * 119.33340 * 359.97438 * 22 21 20
24 24 N 1.31974 * 120.85001 * 359.72166 * 23 22 21
25 25 C 1.34747 * 124.38084 * 95.42477 * 11 10 9
26 26 O 1.21282 * 125.12606 * 0.96505 * 25 11 10
27 27 H 0.97001 * 120.00071 * 359.97438 * 1 2 3
28 28 H 1.09006 * 109.46966 * 60.00285 * 9 7 2
29 29 H 1.08992 * 109.47494 * 299.99915 * 9 7 2
30 30 H 1.09005 * 109.47193 * 294.83481 * 10 9 7
31 31 H 1.09000 * 109.47302 * 54.83770 * 10 9 7
32 32 H 1.08999 * 110.24011 * 282.22515 * 12 11 10
33 33 H 1.09003 * 110.23751 * 44.20561 * 12 11 10
34 34 H 1.09000 * 111.21278 * 266.72741 * 13 12 11
35 35 H 1.08997 * 110.88724 * 142.79516 * 13 12 11
36 36 H 1.09006 * 111.00991 * 274.86311 * 15 14 13
37 37 H 1.09000 * 111.01649 * 38.73013 * 15 14 13
38 38 H 1.08997 * 110.68932 * 207.00549 * 16 15 14
39 39 H 1.09004 * 110.83364 * 83.88689 * 16 15 14
40 40 H 1.08995 * 109.89479 * 262.79130 * 17 16 15
41 41 H 1.09003 * 110.03173 * 141.66372 * 17 16 15
42 42 H 1.08001 * 120.44636 * 359.97438 * 20 19 18
43 43 H 1.07999 * 120.74829 * 180.02562 * 21 20 19
44 44 H 1.08000 * 120.32711 * 180.02562 * 22 21 20
45 45 H 1.07990 * 119.56853 * 180.02562 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4965 2.0465 -1.4000
5 1 1.4465 2.6527 0.7000
6 1 3.5466 1.4402 0.7000
7 6 2.0046 -1.1940 -0.0005
8 1 1.4646 -2.1293 -0.0014
9 6 3.5115 -1.1939 -0.0011
10 6 4.0215 -2.6365 -0.0023
11 7 5.4812 -2.6382 -0.1271
12 6 6.2044 -2.5663 -1.4035
13 6 7.6533 -2.1630 -1.0344
14 6 7.7498 -2.6650 0.4142
15 6 8.4075 -4.0553 0.4649
16 6 8.9477 -4.0907 1.9207
17 6 9.3547 -2.6238 2.1797
18 7 8.5942 -1.7855 1.2305
19 6 7.8266 -0.8421 1.9035
20 6 7.1833 0.1619 1.1866
21 6 6.4224 1.0936 1.8688
22 6 6.3303 0.9902 3.2508
23 6 6.9950 -0.0316 3.8981
24 7 7.7094 -0.9104 3.2205
25 6 6.3338 -2.7118 0.9138
26 8 6.0072 -2.8021 2.0783
27 1 -0.4850 0.8400 0.0004
28 1 3.8752 -0.6803 0.8889
29 1 3.8745 -0.6800 -0.8910
30 1 3.7361 -3.1235 0.9302
31 1 3.5844 -3.1758 -0.8426
32 1 6.1953 -3.5380 -1.8973
33 1 5.7564 -1.8105 -2.0487
34 1 7.7864 -1.0822 -1.0833
35 1 8.3736 -2.6733 -1.6737
36 1 7.6710 -4.8423 0.3021
37 1 9.2218 -4.1291 -0.2560
38 1 9.8132 -4.7490 1.9944
39 1 8.1681 -4.4023 2.6160
40 1 10.4241 -2.5001 2.0094
41 1 9.1073 -2.3428 3.2034
42 1 7.2769 0.2128 0.1118
43 1 5.9113 1.8838 1.3389
44 1 5.7437 1.7017 3.8130
45 1 6.9257 -0.1158 4.9725
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001274739806.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:03:14
Heat of formation + Delta-G solvation = 33.748755 kcal
Electronic energy + Delta-G solvation = -28251.034339 eV
Core-core repulsion = 24655.182305 eV
Total energy + Delta-G solvation = -3595.852035 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.57 seconds
Orbital eigenvalues (eV)
-41.74716 -39.46497 -37.54699 -36.17054 -33.76804 -32.79002 -32.30686 -31.80573
-29.54909 -28.88800 -27.85412 -25.33887 -24.01944 -23.51321 -22.56026 -21.73055
-20.96723 -20.27738 -18.99408 -17.51313 -17.06892 -16.34063 -16.18194 -15.72282
-15.46960 -15.25293 -14.83523 -14.34743 -14.25396 -13.93567 -13.55000 -13.43565
-13.24738 -13.01433 -12.96768 -12.71734 -12.70960 -12.19003 -12.09582 -11.99483
-11.63454 -11.41065 -11.25978 -11.08064 -11.01849 -10.73663 -10.47975 -10.13517
-10.10867 -9.87421 -9.62307 -9.34428 -9.19796 -9.12190 -8.60750 -8.22719
-8.01918 -6.11349 -4.10454 1.31407 1.54297 2.75448 3.23472 3.31489
3.34920 3.36688 3.56294 4.02936 4.27969 4.38551 4.40191 4.55641
4.67506 4.78938 4.92194 5.04778 5.09607 5.12036 5.22777 5.30226
5.35771 5.43193 5.48435 5.57864 5.64478 5.66271 5.77289 5.80344
5.87760 5.91638 5.98063 6.06850 6.13680 6.24059 6.26474 6.44790
6.54206 6.65281 6.68209 6.77542 7.10355 7.25079 7.28412 7.56592
7.69781 8.18602 8.42011 8.50462 8.91653 9.50368 11.01789
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.015169 B = 0.005727 C = 0.004762
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1845.423013 B = 4888.357186 C = 5878.309926
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.900 5.900
2 C 0.071 3.929
3 Si 0.877 3.123
4 H -0.277 1.277
5 H -0.287 1.287
6 H -0.263 1.263
7 C -0.521 4.521
8 H 0.073 0.927
9 C -0.019 4.019
10 C 0.136 3.864
11 N -0.610 5.610
12 C 0.098 3.902
13 C -0.118 4.118
14 C 0.070 3.930
15 C -0.106 4.106
16 C -0.137 4.137
17 C 0.031 3.969
18 N -0.448 5.448
19 C 0.304 3.696
20 C -0.172 4.172
21 C -0.053 4.053
22 C -0.190 4.190
23 C 0.124 3.876
24 N -0.496 5.496
25 C 0.502 3.498
26 O -0.511 6.511
27 H 0.264 0.736
28 H 0.018 0.982
29 H 0.012 0.988
30 H 0.075 0.925
31 H 0.071 0.929
32 H 0.071 0.929
33 H 0.083 0.917
34 H 0.089 0.911
35 H 0.094 0.906
36 H 0.079 0.921
37 H 0.088 0.912
38 H 0.077 0.923
39 H 0.076 0.924
40 H 0.077 0.923
41 H 0.103 0.897
42 H 0.131 0.869
43 H 0.132 0.868
44 H 0.131 0.869
45 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.432 -3.419 -0.432 20.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.131 4.131
3 Si 0.704 3.296
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.187 1.187
7 C -0.560 4.560
8 H 0.091 0.909
9 C -0.057 4.057
10 C 0.016 3.984
11 N -0.344 5.344
12 C -0.026 4.026
13 C -0.156 4.156
14 C -0.022 4.022
15 C -0.144 4.144
16 C -0.175 4.175
17 C -0.095 4.095
18 N -0.167 5.167
19 C 0.073 3.927
20 C -0.194 4.194
21 C -0.079 4.079
22 C -0.211 4.211
23 C -0.034 4.034
24 N -0.208 5.208
25 C 0.286 3.714
26 O -0.386 6.386
27 H 0.074 0.926
28 H 0.037 0.963
29 H 0.030 0.970
30 H 0.093 0.907
31 H 0.090 0.910
32 H 0.090 0.910
33 H 0.101 0.899
34 H 0.108 0.892
35 H 0.113 0.887
36 H 0.098 0.902
37 H 0.106 0.894
38 H 0.095 0.905
39 H 0.094 0.906
40 H 0.095 0.905
41 H 0.121 0.879
42 H 0.149 0.851
43 H 0.150 0.850
44 H 0.149 0.851
45 H 0.169 0.831
Dipole moment (debyes) X Y Z Total
from point charges 20.783 -3.779 0.310 21.126
hybrid contribution -0.846 1.337 -0.158 1.589
sum 19.938 -2.443 0.152 20.087
Atomic orbital electron populations
1.69903 1.06270 1.26978 1.50734 1.24963 0.94686 0.99076 0.94359
0.86815 0.80638 0.83694 0.78449 1.20305 1.21303 1.18729 1.20960
0.88897 0.94693 1.51424 0.90873 1.19835 0.97188 0.92143 0.96567
1.21591 0.74508 1.00219 1.02064 1.48614 1.07482 1.71834 1.06492
1.22195 0.91358 1.02000 0.87059 1.22708 0.96377 1.03090 0.93440
1.22147 0.91234 0.93987 0.94801 1.22541 1.00091 0.93553 0.98220
1.22797 1.01491 0.96983 0.96212 1.22997 0.97404 0.90604 0.98523
1.61060 1.20715 1.13655 1.21312 1.19630 0.91287 0.92898 0.88867
1.21552 1.00622 0.96312 1.00948 1.21462 0.94522 0.97531 0.94409
1.21992 1.02372 1.01361 0.95337 1.22402 0.91844 0.89450 0.99722
1.67336 1.19786 1.25392 1.08328 1.20686 0.87966 0.76850 0.85866
1.90750 1.81475 1.49294 1.17044 0.92634 0.96333 0.97024 0.90659
0.91026 0.91040 0.89868 0.89220 0.88728 0.90245 0.89355 0.90469
0.90568 0.90458 0.87933 0.85125 0.85023 0.85082 0.83083
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16
2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16
3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16
4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16
5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16
6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16
7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16
8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16
9 C -0.02 -0.46 4.36 -27.88 -0.12 -0.58 16
10 C 0.14 2.79 5.94 -4.04 -0.02 2.76 16
11 N -0.61 -10.53 2.94 -172.42 -0.51 -11.03 16
12 C 0.10 1.23 7.37 -2.85 -0.02 1.20 16
13 C -0.12 -1.30 6.21 -25.43 -0.16 -1.45 16
14 C 0.07 0.96 0.56 -132.29 -0.07 0.88 16
15 C -0.11 -1.16 5.97 -25.04 -0.15 -1.31 16
16 C -0.14 -1.57 6.85 -24.76 -0.17 -1.74 16
17 C 0.03 0.40 6.79 -2.63 -0.02 0.39 16
18 N -0.45 -6.43 4.87 -157.65 -0.77 -7.20 16
19 C 0.30 5.05 4.20 -155.03 -0.65 4.40 16
20 C -0.17 -2.83 8.78 -39.23 -0.34 -3.18 16
21 C -0.05 -0.87 10.17 -39.32 -0.40 -1.27 16
22 C -0.19 -2.94 10.10 -39.42 -0.40 -3.34 16
23 C 0.12 1.94 11.17 -17.57 -0.20 1.74 16
24 N -0.50 -8.50 7.32 -12.44 -0.09 -8.59 16
25 C 0.50 8.99 5.07 -11.23 -0.06 8.93 16
26 O -0.51 -11.15 15.77 5.56 0.09 -11.06 16
27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
28 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16
29 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16
30 H 0.07 1.68 7.82 -51.93 -0.41 1.27 16
31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16
32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16
34 H 0.09 1.01 6.05 -51.93 -0.31 0.69 16
35 H 0.09 0.75 7.63 -51.93 -0.40 0.35 16
36 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16
37 H 0.09 0.74 7.78 -51.93 -0.40 0.34 16
38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16
39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
41 H 0.10 1.52 5.94 -51.93 -0.31 1.21 16
42 H 0.13 1.95 6.00 -52.49 -0.32 1.63 16
43 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16
44 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16
45 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16
LS Contribution 355.06 15.07 5.35 5.35
Total: -1.00 -34.63 355.06 -9.75 -44.38
By element:
Atomic # 1 Polarization: 10.59 SS G_CDS: -6.72 Total: 3.88 kcal
Atomic # 6 Polarization: -2.47 SS G_CDS: -3.21 Total: -5.68 kcal
Atomic # 7 Polarization: -53.07 SS G_CDS: -0.59 Total: -53.66 kcal
Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal
Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal
Total LS contribution 5.35 Total: 5.35 kcal
Total: -34.63 -9.75 -44.38 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001274739806.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.127 kcal
(2) G-P(sol) polarization free energy of solvation -34.626 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.501 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) 33.749 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.57 seconds