Wall clock time and date at job start Tue Mar 31 2020 11:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48497 * 109.47176 * 270.00315 * 3 2 1 5 5 H 1.48504 * 109.47241 * 29.99917 * 3 2 1 6 6 H 1.48495 * 109.47130 * 149.99870 * 3 2 1 7 7 C 1.37874 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00105 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47047 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47122 * 174.84056 * 10 9 7 12 12 C 1.46886 * 124.36828 * 275.12430 * 11 10 9 13 13 C 1.54860 * 105.43913 * 163.10366 * 12 11 10 14 14 C 1.53614 * 101.44692 * 24.83384 * 13 12 11 15 15 C 1.53891 * 110.68122 * 96.40726 * 14 13 12 16 16 C 1.55319 * 101.54274 * 156.79951 * 15 14 13 17 17 C 1.54412 * 103.13235 * 325.41192 * 16 15 14 18 18 N 1.46729 * 111.40276 * 214.19685 * 14 13 12 19 19 C 1.38999 * 111.00101 * 94.57290 * 18 14 13 20 20 C 1.39136 * 119.70850 * 291.55322 * 19 18 14 21 21 C 1.38296 * 119.10065 * 179.97438 * 20 19 18 22 22 C 1.38887 * 118.50151 * 0.02562 * 21 20 19 23 23 C 1.38023 * 119.33340 * 359.97438 * 22 21 20 24 24 N 1.31974 * 120.85001 * 359.72166 * 23 22 21 25 25 C 1.34747 * 124.38084 * 95.42477 * 11 10 9 26 26 O 1.21282 * 125.12606 * 0.96505 * 25 11 10 27 27 H 0.97001 * 120.00071 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46966 * 60.00285 * 9 7 2 29 29 H 1.08992 * 109.47494 * 299.99915 * 9 7 2 30 30 H 1.09005 * 109.47193 * 294.83481 * 10 9 7 31 31 H 1.09000 * 109.47302 * 54.83770 * 10 9 7 32 32 H 1.08999 * 110.24011 * 282.22515 * 12 11 10 33 33 H 1.09003 * 110.23751 * 44.20561 * 12 11 10 34 34 H 1.09000 * 111.21278 * 266.72741 * 13 12 11 35 35 H 1.08997 * 110.88724 * 142.79516 * 13 12 11 36 36 H 1.09006 * 111.00991 * 274.86311 * 15 14 13 37 37 H 1.09000 * 111.01649 * 38.73013 * 15 14 13 38 38 H 1.08997 * 110.68932 * 207.00549 * 16 15 14 39 39 H 1.09004 * 110.83364 * 83.88689 * 16 15 14 40 40 H 1.08995 * 109.89479 * 262.79130 * 17 16 15 41 41 H 1.09003 * 110.03173 * 141.66372 * 17 16 15 42 42 H 1.08001 * 120.44636 * 359.97438 * 20 19 18 43 43 H 1.07999 * 120.74829 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.32711 * 180.02562 * 22 21 20 45 45 H 1.07990 * 119.56853 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4812 -2.6382 -0.1271 12 6 6.2044 -2.5663 -1.4035 13 6 7.6533 -2.1630 -1.0344 14 6 7.7498 -2.6650 0.4142 15 6 8.4075 -4.0553 0.4649 16 6 8.9477 -4.0907 1.9207 17 6 9.3547 -2.6238 2.1797 18 7 8.5942 -1.7855 1.2305 19 6 7.8266 -0.8421 1.9035 20 6 7.1833 0.1619 1.1866 21 6 6.4224 1.0936 1.8688 22 6 6.3303 0.9902 3.2508 23 6 6.9950 -0.0316 3.8981 24 7 7.7094 -0.9104 3.2205 25 6 6.3338 -2.7118 0.9138 26 8 6.0072 -2.8021 2.0783 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8745 -0.6800 -0.8910 30 1 3.7361 -3.1235 0.9302 31 1 3.5844 -3.1758 -0.8426 32 1 6.1953 -3.5380 -1.8973 33 1 5.7564 -1.8105 -2.0487 34 1 7.7864 -1.0822 -1.0833 35 1 8.3736 -2.6733 -1.6737 36 1 7.6710 -4.8423 0.3021 37 1 9.2218 -4.1291 -0.2560 38 1 9.8132 -4.7490 1.9944 39 1 8.1681 -4.4023 2.6160 40 1 10.4241 -2.5001 2.0094 41 1 9.1073 -2.3428 3.2034 42 1 7.2769 0.2128 0.1118 43 1 5.9113 1.8838 1.3389 44 1 5.7437 1.7017 3.8130 45 1 6.9257 -0.1158 4.9725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274739806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:14 Heat of formation + Delta-G solvation = 33.748755 kcal Electronic energy + Delta-G solvation = -28251.034339 eV Core-core repulsion = 24655.182305 eV Total energy + Delta-G solvation = -3595.852035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.74716 -39.46497 -37.54699 -36.17054 -33.76804 -32.79002 -32.30686 -31.80573 -29.54909 -28.88800 -27.85412 -25.33887 -24.01944 -23.51321 -22.56026 -21.73055 -20.96723 -20.27738 -18.99408 -17.51313 -17.06892 -16.34063 -16.18194 -15.72282 -15.46960 -15.25293 -14.83523 -14.34743 -14.25396 -13.93567 -13.55000 -13.43565 -13.24738 -13.01433 -12.96768 -12.71734 -12.70960 -12.19003 -12.09582 -11.99483 -11.63454 -11.41065 -11.25978 -11.08064 -11.01849 -10.73663 -10.47975 -10.13517 -10.10867 -9.87421 -9.62307 -9.34428 -9.19796 -9.12190 -8.60750 -8.22719 -8.01918 -6.11349 -4.10454 1.31407 1.54297 2.75448 3.23472 3.31489 3.34920 3.36688 3.56294 4.02936 4.27969 4.38551 4.40191 4.55641 4.67506 4.78938 4.92194 5.04778 5.09607 5.12036 5.22777 5.30226 5.35771 5.43193 5.48435 5.57864 5.64478 5.66271 5.77289 5.80344 5.87760 5.91638 5.98063 6.06850 6.13680 6.24059 6.26474 6.44790 6.54206 6.65281 6.68209 6.77542 7.10355 7.25079 7.28412 7.56592 7.69781 8.18602 8.42011 8.50462 8.91653 9.50368 11.01789 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.005727 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.423013 B = 4888.357186 C = 5878.309926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.521 4.521 8 H 0.073 0.927 9 C -0.019 4.019 10 C 0.136 3.864 11 N -0.610 5.610 12 C 0.098 3.902 13 C -0.118 4.118 14 C 0.070 3.930 15 C -0.106 4.106 16 C -0.137 4.137 17 C 0.031 3.969 18 N -0.448 5.448 19 C 0.304 3.696 20 C -0.172 4.172 21 C -0.053 4.053 22 C -0.190 4.190 23 C 0.124 3.876 24 N -0.496 5.496 25 C 0.502 3.498 26 O -0.511 6.511 27 H 0.264 0.736 28 H 0.018 0.982 29 H 0.012 0.988 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.432 -3.419 -0.432 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.057 4.057 10 C 0.016 3.984 11 N -0.344 5.344 12 C -0.026 4.026 13 C -0.156 4.156 14 C -0.022 4.022 15 C -0.144 4.144 16 C -0.175 4.175 17 C -0.095 4.095 18 N -0.167 5.167 19 C 0.073 3.927 20 C -0.194 4.194 21 C -0.079 4.079 22 C -0.211 4.211 23 C -0.034 4.034 24 N -0.208 5.208 25 C 0.286 3.714 26 O -0.386 6.386 27 H 0.074 0.926 28 H 0.037 0.963 29 H 0.030 0.970 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 20.783 -3.779 0.310 21.126 hybrid contribution -0.846 1.337 -0.158 1.589 sum 19.938 -2.443 0.152 20.087 Atomic orbital electron populations 1.69903 1.06270 1.26978 1.50734 1.24963 0.94686 0.99076 0.94359 0.86815 0.80638 0.83694 0.78449 1.20305 1.21303 1.18729 1.20960 0.88897 0.94693 1.51424 0.90873 1.19835 0.97188 0.92143 0.96567 1.21591 0.74508 1.00219 1.02064 1.48614 1.07482 1.71834 1.06492 1.22195 0.91358 1.02000 0.87059 1.22708 0.96377 1.03090 0.93440 1.22147 0.91234 0.93987 0.94801 1.22541 1.00091 0.93553 0.98220 1.22797 1.01491 0.96983 0.96212 1.22997 0.97404 0.90604 0.98523 1.61060 1.20715 1.13655 1.21312 1.19630 0.91287 0.92898 0.88867 1.21552 1.00622 0.96312 1.00948 1.21462 0.94522 0.97531 0.94409 1.21992 1.02372 1.01361 0.95337 1.22402 0.91844 0.89450 0.99722 1.67336 1.19786 1.25392 1.08328 1.20686 0.87966 0.76850 0.85866 1.90750 1.81475 1.49294 1.17044 0.92634 0.96333 0.97024 0.90659 0.91026 0.91040 0.89868 0.89220 0.88728 0.90245 0.89355 0.90469 0.90568 0.90458 0.87933 0.85125 0.85023 0.85082 0.83083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.88 21.47 27.47 -169.99 -4.67 16.80 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.75 9.66 -34.44 -0.33 -15.08 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.02 -0.46 4.36 -27.88 -0.12 -0.58 16 10 C 0.14 2.79 5.94 -4.04 -0.02 2.76 16 11 N -0.61 -10.53 2.94 -172.42 -0.51 -11.03 16 12 C 0.10 1.23 7.37 -2.85 -0.02 1.20 16 13 C -0.12 -1.30 6.21 -25.43 -0.16 -1.45 16 14 C 0.07 0.96 0.56 -132.29 -0.07 0.88 16 15 C -0.11 -1.16 5.97 -25.04 -0.15 -1.31 16 16 C -0.14 -1.57 6.85 -24.76 -0.17 -1.74 16 17 C 0.03 0.40 6.79 -2.63 -0.02 0.39 16 18 N -0.45 -6.43 4.87 -157.65 -0.77 -7.20 16 19 C 0.30 5.05 4.20 -155.03 -0.65 4.40 16 20 C -0.17 -2.83 8.78 -39.23 -0.34 -3.18 16 21 C -0.05 -0.87 10.17 -39.32 -0.40 -1.27 16 22 C -0.19 -2.94 10.10 -39.42 -0.40 -3.34 16 23 C 0.12 1.94 11.17 -17.57 -0.20 1.74 16 24 N -0.50 -8.50 7.32 -12.44 -0.09 -8.59 16 25 C 0.50 8.99 5.07 -11.23 -0.06 8.93 16 26 O -0.51 -11.15 15.77 5.56 0.09 -11.06 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 29 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 30 H 0.07 1.68 7.82 -51.93 -0.41 1.27 16 31 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.01 6.05 -51.93 -0.31 0.69 16 35 H 0.09 0.75 7.63 -51.93 -0.40 0.35 16 36 H 0.08 0.88 8.00 -51.93 -0.42 0.46 16 37 H 0.09 0.74 7.78 -51.93 -0.40 0.34 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 1.52 5.94 -51.93 -0.31 1.21 16 42 H 0.13 1.95 6.00 -52.49 -0.32 1.63 16 43 H 0.13 2.00 8.06 -52.49 -0.42 1.58 16 44 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 45 H 0.15 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 355.06 15.07 5.35 5.35 Total: -1.00 -34.63 355.06 -9.75 -44.38 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -6.72 Total: 3.88 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -3.21 Total: -5.68 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.59 Total: -53.66 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.06 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.67 Total: 16.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.63 -9.75 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274739806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.127 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds