Wall clock time and date at job start Tue Mar 31 2020 11:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99850 * 2 1 4 4 H 1.48497 * 109.47176 * 270.00315 * 3 2 1 5 5 H 1.48504 * 109.47241 * 29.99917 * 3 2 1 6 6 H 1.48495 * 109.47130 * 149.99870 * 3 2 1 7 7 C 1.37874 * 120.00293 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99696 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00105 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47047 * 180.02562 * 9 7 2 11 11 N 1.46500 * 109.47122 * 174.84056 * 10 9 7 12 12 C 1.46886 * 124.36828 * 275.12430 * 11 10 9 13 13 C 1.54860 * 105.43913 * 163.10366 * 12 11 10 14 14 C 1.53614 * 101.44692 * 24.83384 * 13 12 11 15 15 C 1.53891 * 110.68122 * 96.40726 * 14 13 12 16 16 C 1.55319 * 101.54274 * 156.79951 * 15 14 13 17 17 C 1.54412 * 103.13235 * 325.41192 * 16 15 14 18 18 N 1.46729 * 111.40276 * 214.19685 * 14 13 12 19 19 C 1.38999 * 111.00101 * 94.57290 * 18 14 13 20 20 C 1.39136 * 119.70850 * 291.55322 * 19 18 14 21 21 C 1.38296 * 119.10065 * 179.97438 * 20 19 18 22 22 C 1.38887 * 118.50151 * 0.02562 * 21 20 19 23 23 C 1.38023 * 119.33340 * 359.97438 * 22 21 20 24 24 N 1.31974 * 120.85001 * 359.72166 * 23 22 21 25 25 C 1.34747 * 124.38084 * 95.42477 * 11 10 9 26 26 O 1.21282 * 125.12606 * 0.96505 * 25 11 10 27 27 H 0.97001 * 120.00071 * 359.97438 * 1 2 3 28 28 H 1.09006 * 109.46966 * 60.00285 * 9 7 2 29 29 H 1.08992 * 109.47494 * 299.99915 * 9 7 2 30 30 H 1.09005 * 109.47193 * 294.83481 * 10 9 7 31 31 H 1.09000 * 109.47302 * 54.83770 * 10 9 7 32 32 H 1.08999 * 110.24011 * 282.22515 * 12 11 10 33 33 H 1.09003 * 110.23751 * 44.20561 * 12 11 10 34 34 H 1.09000 * 111.21278 * 266.72741 * 13 12 11 35 35 H 1.08997 * 110.88724 * 142.79516 * 13 12 11 36 36 H 1.09006 * 111.00991 * 274.86311 * 15 14 13 37 37 H 1.09000 * 111.01649 * 38.73013 * 15 14 13 38 38 H 1.08997 * 110.68932 * 207.00549 * 16 15 14 39 39 H 1.09004 * 110.83364 * 83.88689 * 16 15 14 40 40 H 1.08995 * 109.89479 * 262.79130 * 17 16 15 41 41 H 1.09003 * 110.03173 * 141.66372 * 17 16 15 42 42 H 1.08001 * 120.44636 * 359.97438 * 20 19 18 43 43 H 1.07999 * 120.74829 * 180.02562 * 21 20 19 44 44 H 1.08000 * 120.32711 * 180.02562 * 22 21 20 45 45 H 1.07990 * 119.56853 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5115 -1.1939 -0.0011 10 6 4.0215 -2.6365 -0.0023 11 7 5.4812 -2.6382 -0.1271 12 6 6.2044 -2.5663 -1.4035 13 6 7.6533 -2.1630 -1.0344 14 6 7.7498 -2.6650 0.4142 15 6 8.4075 -4.0553 0.4649 16 6 8.9477 -4.0907 1.9207 17 6 9.3547 -2.6238 2.1797 18 7 8.5942 -1.7855 1.2305 19 6 7.8266 -0.8421 1.9035 20 6 7.1833 0.1619 1.1866 21 6 6.4224 1.0936 1.8688 22 6 6.3303 0.9902 3.2508 23 6 6.9950 -0.0316 3.8981 24 7 7.7094 -0.9104 3.2205 25 6 6.3338 -2.7118 0.9138 26 8 6.0072 -2.8021 2.0783 27 1 -0.4850 0.8400 0.0004 28 1 3.8752 -0.6803 0.8889 29 1 3.8745 -0.6800 -0.8910 30 1 3.7361 -3.1235 0.9302 31 1 3.5844 -3.1758 -0.8426 32 1 6.1953 -3.5380 -1.8973 33 1 5.7564 -1.8105 -2.0487 34 1 7.7864 -1.0822 -1.0833 35 1 8.3736 -2.6733 -1.6737 36 1 7.6710 -4.8423 0.3021 37 1 9.2218 -4.1291 -0.2560 38 1 9.8132 -4.7490 1.9944 39 1 8.1681 -4.4023 2.6160 40 1 10.4241 -2.5001 2.0094 41 1 9.1073 -2.3428 3.2034 42 1 7.2769 0.2128 0.1118 43 1 5.9113 1.8838 1.3389 44 1 5.7437 1.7017 3.8130 45 1 6.9257 -0.1158 4.9725 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274739806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:13 Heat of formation + Delta-G solvation = 10.765408 kcal Electronic energy + Delta-G solvation = -28252.030972 eV Core-core repulsion = 24655.182305 eV Total energy + Delta-G solvation = -3596.848667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.88199 -40.68156 -38.72677 -37.55549 -35.61084 -34.05313 -33.62415 -33.26644 -31.13368 -29.98230 -28.89873 -27.10853 -25.12138 -24.66665 -23.75376 -23.25386 -22.09111 -21.62491 -20.26313 -19.10449 -18.69031 -17.57053 -17.41904 -16.95615 -16.80747 -16.40005 -16.32580 -15.93345 -15.36953 -15.11740 -14.98179 -14.82317 -14.66109 -14.52615 -14.25199 -14.13388 -13.82565 -13.64346 -13.19211 -13.06932 -12.94889 -12.87541 -12.51840 -12.32315 -12.21867 -12.06745 -11.99837 -11.79005 -11.58712 -11.55510 -11.21396 -10.88018 -10.80016 -10.46955 -10.32317 -9.62857 -9.19721 -8.35535 -6.41158 0.12178 0.32268 1.28492 1.32333 1.44150 1.45892 2.05378 2.30694 2.44905 2.87797 2.99494 3.27959 3.40399 3.53002 3.63395 3.82967 3.90996 3.99704 4.07821 4.14869 4.20332 4.22644 4.29898 4.39261 4.45374 4.57189 4.67164 4.70515 4.75378 4.79979 4.82992 4.94665 4.99813 5.03717 5.06591 5.08159 5.13836 5.25969 5.27415 5.30907 5.45543 5.53386 5.62680 5.69661 6.08807 6.17546 6.20972 6.65007 6.99459 7.14383 7.24415 8.80735 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015169 B = 0.005727 C = 0.004762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.423013 B = 4888.357186 C = 5878.309926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.011 3.989 3 Si 0.945 3.055 4 H -0.258 1.258 5 H -0.285 1.285 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.036 0.964 9 C -0.003 4.003 10 C 0.148 3.852 11 N -0.616 5.616 12 C 0.089 3.911 13 C -0.107 4.107 14 C 0.070 3.930 15 C -0.099 4.099 16 C -0.133 4.133 17 C 0.027 3.973 18 N -0.442 5.442 19 C 0.292 3.708 20 C -0.185 4.185 21 C -0.072 4.072 22 C -0.199 4.199 23 C 0.108 3.892 24 N -0.515 5.515 25 C 0.491 3.509 26 O -0.563 6.563 27 H 0.268 0.732 28 H -0.003 1.003 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.040 0.960 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.152 0.848 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.640 -3.102 -2.526 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.182 1.182 5 H -0.211 1.211 6 H -0.173 1.173 7 C -0.572 4.572 8 H 0.054 0.946 9 C -0.041 4.041 10 C 0.026 3.974 11 N -0.348 5.348 12 C -0.033 4.033 13 C -0.144 4.144 14 C -0.021 4.021 15 C -0.137 4.137 16 C -0.171 4.171 17 C -0.099 4.099 18 N -0.161 5.161 19 C 0.061 3.939 20 C -0.207 4.207 21 C -0.098 4.098 22 C -0.219 4.219 23 C -0.050 4.050 24 N -0.228 5.228 25 C 0.277 3.723 26 O -0.441 6.441 27 H 0.077 0.923 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.158 0.842 36 H 0.096 0.904 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.059 0.941 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.162 0.838 43 H 0.159 0.841 44 H 0.170 0.830 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 24.025 -3.477 -1.824 24.344 hybrid contribution -1.923 1.150 0.554 2.308 sum 22.102 -2.327 -1.270 22.261 Atomic orbital electron populations 1.70052 1.08227 1.28281 1.52082 1.25930 0.95559 1.03357 0.93786 0.85737 0.79564 0.78325 0.79578 1.18240 1.21061 1.17262 1.21260 0.91293 0.93479 1.51159 0.94579 1.19614 0.94171 0.94377 0.95974 1.21138 0.77325 0.97785 1.01167 1.48664 1.06035 1.71430 1.08696 1.22593 0.91741 1.04037 0.84895 1.22821 0.96134 1.03571 0.91901 1.22306 0.88180 0.95830 0.95830 1.22668 1.00958 0.91558 0.98535 1.22763 1.01696 0.96582 0.96080 1.23086 0.98549 0.91225 0.97070 1.61226 1.20090 1.13490 1.21318 1.19927 0.91512 0.93508 0.88903 1.21788 1.00754 0.96419 1.01730 1.21756 0.94969 0.98092 0.95023 1.22294 1.02420 1.01737 0.95491 1.22876 0.91709 0.89399 1.00974 1.67404 1.20481 1.25895 1.09028 1.21573 0.90021 0.75525 0.85167 1.90714 1.82712 1.51373 1.19295 0.92347 0.98443 0.95403 0.93714 0.89617 0.87998 0.89402 0.89342 0.84219 0.90406 0.85226 0.87173 0.94078 0.87908 0.90494 0.83778 0.84069 0.83004 0.80992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.01 0.66 5.47 84.65 0.46 1.12 16 3 Si 0.94 44.05 27.47 68.60 1.88 45.93 16 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 7 C -0.53 -31.03 9.66 25.60 0.25 -30.78 16 8 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 9 C 0.00 -0.14 4.36 29.85 0.13 -0.01 16 10 C 0.15 6.11 5.94 86.38 0.51 6.62 16 11 N -0.62 -20.45 2.94 -817.83 -2.41 -22.86 16 12 C 0.09 1.91 7.37 86.94 0.64 2.55 16 13 C -0.11 -1.86 6.21 31.44 0.20 -1.66 16 14 C 0.07 1.72 0.56 3.17 0.00 1.72 16 15 C -0.10 -1.79 5.97 31.69 0.19 -1.60 16 16 C -0.13 -2.77 6.85 31.87 0.22 -2.55 16 17 C 0.03 0.65 6.79 86.63 0.59 1.24 16 18 N -0.44 -11.75 4.87 -652.67 -3.18 -14.93 16 19 C 0.29 9.51 4.20 133.07 0.56 10.07 16 20 C -0.19 -5.89 8.78 22.50 0.20 -5.69 16 21 C -0.07 -2.31 10.17 22.44 0.23 -2.08 16 22 C -0.20 -6.10 10.10 22.37 0.23 -5.88 16 23 C 0.11 3.41 11.17 84.62 0.95 4.36 16 24 N -0.52 -17.84 7.32 -193.27 -1.41 -19.25 16 25 C 0.49 17.24 5.07 87.51 0.44 17.68 16 26 O -0.56 -25.30 15.77 -3.04 -0.05 -25.35 16 27 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.00 -0.15 7.20 -2.38 -0.02 -0.16 16 29 H 0.03 1.24 7.57 -2.39 -0.02 1.23 16 30 H 0.04 2.09 7.82 -2.38 -0.02 2.07 16 31 H 0.09 3.25 8.14 -2.39 -0.02 3.23 16 32 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.61 6.05 -2.39 -0.01 1.59 16 35 H 0.14 1.24 7.63 -2.39 -0.02 1.22 16 36 H 0.08 1.47 8.00 -2.38 -0.02 1.45 16 37 H 0.13 1.34 7.78 -2.39 -0.02 1.32 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 2.27 5.94 -2.39 -0.01 2.26 16 42 H 0.14 4.01 6.00 -2.91 -0.02 3.99 16 43 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 44 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 45 H 0.17 4.39 8.06 -2.92 -0.02 4.37 16 Total: -1.00 -80.01 355.06 1.85 -78.16 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.93 Total: 22.31 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 5.79 Total: -4.89 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -6.70 Total: -116.17 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.05 Total: -25.35 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.88 Total: 45.93 kcal Total: -80.01 1.85 -78.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274739806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.923 kcal (2) G-P(sol) polarization free energy of solvation -80.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds