Wall clock time and date at job start Tue Mar 31 2020 10:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00280 * 2 1 4 4 H 1.48495 * 109.47267 * 240.00187 * 3 2 1 5 5 H 1.48502 * 109.47015 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47141 * 120.00030 * 3 2 1 7 7 C 1.37886 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00015 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46788 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46708 * 180.02562 * 10 9 7 12 12 C 1.46921 * 124.37914 * 89.99955 * 11 10 9 13 13 C 1.54802 * 105.53897 * 163.24672 * 12 11 10 14 14 C 1.53216 * 101.39167 * 24.18377 * 13 12 11 15 15 C 1.53704 * 111.52585 * 98.82124 * 14 13 12 16 16 C 1.54573 * 102.86101 * 154.14618 * 15 14 13 17 17 N 1.47556 * 107.29644 * 339.03250 * 16 15 14 18 18 C 1.39699 * 110.99783 * 236.80202 * 17 16 15 19 19 C 1.39317 * 120.49326 * 59.60076 * 18 17 16 20 20 C 1.38504 * 118.35663 * 179.75410 * 19 18 17 21 21 C 1.38275 * 119.24223 * 0.49681 * 20 19 18 22 22 N 1.31856 * 120.92539 * 359.75995 * 21 20 19 23 23 C 1.31814 * 121.80629 * 359.97438 * 22 21 20 24 24 C 1.48118 * 108.64574 * 359.12372 * 17 16 15 25 25 C 1.34892 * 124.37339 * 269.99741 * 11 10 9 26 26 O 1.21280 * 125.21805 * 1.27357 * 25 11 10 27 27 H 0.97002 * 120.00057 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46651 * 60.00941 * 9 7 2 29 29 H 1.09000 * 109.47280 * 300.00712 * 9 7 2 30 30 H 1.08997 * 109.47330 * 60.00324 * 10 9 7 31 31 H 1.08998 * 109.46920 * 299.99942 * 10 9 7 32 32 H 1.09003 * 110.23770 * 44.23289 * 12 11 10 33 33 H 1.08996 * 110.31130 * 282.30113 * 12 11 10 34 34 H 1.08998 * 111.04284 * 266.15695 * 13 12 11 35 35 H 1.09004 * 111.04064 * 142.20989 * 13 12 11 36 36 H 1.08998 * 110.72725 * 35.80678 * 15 14 13 37 37 H 1.08994 * 110.73705 * 272.49842 * 15 14 13 38 38 H 1.08999 * 109.88066 * 219.60062 * 16 15 14 39 39 H 1.09003 * 109.87386 * 98.45772 * 16 15 14 40 40 H 1.07998 * 120.81681 * 359.97438 * 19 18 17 41 41 H 1.07997 * 120.37508 * 180.21225 * 20 19 18 42 42 H 1.07993 * 119.53288 * 179.74556 * 21 20 19 43 43 H 1.07994 * 119.67688 * 180.02562 * 23 22 21 44 44 H 1.09007 * 110.39578 * 141.38019 * 24 17 16 45 45 H 1.09003 * 110.40035 * 263.78374 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5127 -4.9308 -0.0012 12 6 1.0982 -5.6489 -1.2141 13 6 0.7639 -7.0876 -0.7505 14 6 0.4340 -6.8600 0.7283 15 6 -1.0832 -6.7831 0.9623 16 6 -1.2269 -7.2260 2.4363 17 7 -0.0108 -7.9845 2.7870 18 6 -0.3336 -9.2654 3.2418 19 6 -1.0310 -10.1513 2.4235 20 6 -1.3233 -11.4119 2.9173 21 6 -0.9259 -11.7439 4.1994 22 7 -0.2716 -10.8804 4.9511 23 6 0.0314 -9.6727 4.5186 24 6 0.8667 -8.0498 1.5955 25 6 1.1315 -5.5907 1.1119 26 8 1.3235 -5.2140 2.2486 27 1 -0.4850 0.8401 0.0004 28 1 0.6241 -2.5567 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8719 -3.6044 0.8894 31 1 2.8719 -3.6043 -0.8905 32 1 1.9123 -5.6661 -1.9388 33 1 0.2165 -5.1788 -1.6495 34 1 1.6260 -7.7451 -0.8623 35 1 -0.0989 -7.4813 -1.2878 36 1 -1.6109 -7.4694 0.3000 37 1 -1.4431 -5.7630 0.8289 38 1 -2.1054 -7.8613 2.5485 39 1 -1.3159 -6.3503 3.0793 40 1 -1.3330 -9.8634 1.4273 41 1 -1.8594 -12.1257 2.3095 42 1 -1.1550 -12.7240 4.5907 43 1 0.5688 -8.9931 5.1633 44 1 1.9119 -7.9468 1.8874 45 1 0.7114 -8.9864 1.0601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274842805.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:25 Heat of formation + Delta-G solvation = -6.876462 kcal Electronic energy + Delta-G solvation = -26290.560356 eV Core-core repulsion = 22692.946680 eV Total energy + Delta-G solvation = -3597.613676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.40080 -41.09925 -38.92399 -37.43211 -35.88467 -34.49633 -33.02389 -32.42543 -30.72469 -30.00579 -28.92352 -27.05358 -25.18961 -24.45426 -23.95801 -23.56278 -22.00319 -21.76649 -19.93385 -18.69813 -18.32779 -17.68652 -17.36812 -17.06684 -16.88613 -16.70016 -16.37188 -15.52856 -15.29867 -14.96388 -14.82303 -14.77624 -14.48776 -14.34608 -14.10878 -14.04482 -13.78599 -13.73014 -13.26646 -13.18738 -13.07970 -12.85762 -12.81077 -12.59821 -12.43471 -12.08993 -11.93292 -11.91304 -11.57358 -11.43599 -10.74615 -10.62253 -10.54530 -10.52406 -9.86418 -9.52542 -9.44448 -8.25370 -6.38300 0.10976 0.30045 1.37450 1.41879 1.49270 1.62094 2.15973 2.40635 2.68694 2.80957 3.08015 3.26192 3.38983 3.52473 3.64939 3.83130 3.95697 3.96942 4.01450 4.14026 4.20444 4.30107 4.35404 4.41102 4.45175 4.55134 4.61883 4.66510 4.74059 4.74721 4.83727 4.85573 4.89879 4.98231 5.08132 5.14506 5.17559 5.28977 5.32653 5.45385 5.57980 5.60091 5.72740 5.82690 6.14466 6.30700 6.34636 6.77036 7.04703 7.28974 7.32202 8.86613 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028038 B = 0.002715 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.400273 B =10308.883313 C =10658.475529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.547 4.547 8 H 0.066 0.934 9 C 0.026 3.974 10 C 0.143 3.857 11 N -0.624 5.624 12 C 0.092 3.908 13 C -0.100 4.100 14 C -0.101 4.101 15 C -0.111 4.111 16 C 0.055 3.945 17 N -0.508 5.508 18 C 0.031 3.969 19 C -0.105 4.105 20 C -0.152 4.152 21 C 0.081 3.919 22 N -0.506 5.506 23 C 0.099 3.901 24 C 0.084 3.916 25 C 0.511 3.489 26 O -0.570 6.570 27 H 0.265 0.735 28 H 0.001 0.999 29 H -0.030 1.030 30 H 0.048 0.952 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.157 0.843 41 H 0.171 0.829 42 H 0.182 0.818 43 H 0.145 0.855 44 H 0.065 0.935 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.912 -26.940 -3.889 27.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.183 1.183 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.585 4.585 8 H 0.084 0.916 9 C -0.012 4.012 10 C 0.021 3.979 11 N -0.356 5.356 12 C -0.030 4.030 13 C -0.138 4.138 14 C -0.105 4.105 15 C -0.150 4.150 16 C -0.072 4.072 17 N -0.230 5.230 18 C -0.066 4.066 19 C -0.132 4.132 20 C -0.172 4.172 21 C -0.076 4.076 22 N -0.215 5.215 23 C -0.058 4.058 24 C -0.042 4.042 25 C 0.299 3.701 26 O -0.449 6.449 27 H 0.073 0.927 28 H 0.019 0.981 29 H -0.012 1.012 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.175 0.825 41 H 0.188 0.812 42 H 0.199 0.801 43 H 0.163 0.837 44 H 0.083 0.917 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.385 -26.528 -2.064 26.822 hybrid contribution -0.305 1.706 -0.782 1.901 sum -3.689 -24.822 -2.846 25.256 Atomic orbital electron populations 1.70104 1.07981 1.27996 1.51151 1.26025 0.95797 1.03599 0.94354 0.85433 0.78240 0.77622 0.79357 1.18260 1.20755 1.19628 1.21534 0.93736 0.91883 1.51357 0.91595 1.19188 0.94536 0.93167 0.94318 1.21322 0.93817 0.81289 1.01437 1.48820 1.55982 1.22565 1.08282 1.22442 1.01451 0.92379 0.86736 1.22606 1.05483 0.95266 0.90430 1.21523 0.97153 0.92955 0.98888 1.22625 0.92380 1.03133 0.96838 1.22865 0.90953 0.97582 0.95753 1.60963 1.15921 1.12085 1.33991 1.20119 0.99717 0.90822 0.95894 1.22470 0.95942 0.93975 1.00852 1.22444 1.00509 0.97122 0.97077 1.23357 0.93244 0.99412 0.91554 1.67738 1.12956 1.03149 1.37682 1.22745 0.96918 0.92604 0.93547 1.22780 0.97050 0.96543 0.87819 1.20969 0.78288 0.86676 0.84117 1.90682 1.58174 1.73118 1.22907 0.92671 0.98093 1.01150 0.93332 0.89117 0.88307 0.91350 0.87457 0.85122 0.85424 0.92250 0.90098 0.93298 0.82506 0.81172 0.80148 0.83735 0.91682 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.01 29.54 68.60 2.03 47.04 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.43 5.30 29.85 0.16 1.59 16 10 C 0.14 6.25 5.88 86.38 0.51 6.75 16 11 N -0.62 -22.45 2.95 -818.19 -2.41 -24.86 16 12 C 0.09 2.12 7.37 86.91 0.64 2.76 16 13 C -0.10 -1.47 6.26 31.28 0.20 -1.27 16 14 C -0.10 -2.38 0.67 -52.74 -0.04 -2.41 16 15 C -0.11 -2.34 5.94 31.37 0.19 -2.16 16 16 C 0.05 1.32 6.54 86.71 0.57 1.89 16 17 N -0.51 -12.82 5.18 -686.07 -3.55 -16.37 16 18 C 0.03 0.65 4.63 38.31 0.18 0.83 16 19 C -0.10 -1.46 7.95 22.59 0.18 -1.28 16 20 C -0.15 -1.68 10.10 22.34 0.23 -1.45 16 21 C 0.08 1.22 11.18 84.70 0.95 2.17 16 22 N -0.51 -11.41 10.35 -195.29 -2.02 -13.43 16 23 C 0.10 2.39 11.13 84.85 0.94 3.33 16 24 C 0.08 1.83 5.41 86.22 0.47 2.29 16 25 C 0.51 19.22 6.73 87.36 0.59 19.81 16 26 O -0.57 -27.79 17.51 -3.03 -0.05 -27.84 16 27 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H -0.03 -1.93 8.14 -2.39 -0.02 -1.95 16 30 H 0.05 2.30 7.96 -2.39 -0.02 2.28 16 31 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.11 1.14 7.97 -2.39 -0.02 1.12 16 35 H 0.13 0.94 7.62 -2.39 -0.02 0.92 16 36 H 0.13 1.46 7.74 -2.39 -0.02 1.45 16 37 H 0.06 1.60 8.00 -2.39 -0.02 1.58 16 38 H 0.08 1.55 7.02 -2.39 -0.02 1.53 16 39 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.16 1.36 7.87 -2.91 -0.02 1.33 16 41 H 0.17 0.63 8.06 -2.91 -0.02 0.60 16 42 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 43 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.06 1.71 8.01 -2.38 -0.02 1.69 16 45 H 0.10 1.36 6.79 -2.39 -0.02 1.35 16 Total: -1.00 -83.66 367.85 1.69 -81.97 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.97 Total: 9.74 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.44 Total: 1.67 kcal Atomic # 7 Polarization: -104.88 SS G_CDS: -7.70 Total: -112.58 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.05 Total: -27.84 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -83.66 1.69 -81.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274842805.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.094 kcal (2) G-P(sol) polarization free energy of solvation -83.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds