Wall clock time and date at job start Tue Mar 31 2020 11:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99861 * 2 1 4 4 H 1.48501 * 109.47426 * 270.00072 * 3 2 1 5 5 H 1.48497 * 109.47245 * 30.00690 * 3 2 1 6 6 H 1.48504 * 109.46978 * 150.00363 * 3 2 1 7 7 C 1.37881 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00084 * 179.97438 * 7 2 1 10 10 C 1.53498 * 114.20638 * 179.97438 * 9 7 2 11 11 N 1.47072 * 87.98532 * 220.34520 * 10 9 7 12 12 C 1.34776 * 136.05736 * 207.08495 * 11 10 9 13 13 O 1.21283 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.50698 * 119.99874 * 179.97438 * 12 11 10 15 15 H 1.09002 * 115.59228 * 34.17678 * 14 12 11 16 16 C 1.53202 * 117.52068 * 248.35659 * 14 12 11 17 17 C 1.52117 * 59.76387 * 252.58091 * 16 14 12 18 18 C 1.52655 * 129.73203 * 118.97940 * 17 16 14 19 19 N 1.47661 * 87.64520 * 113.71943 * 18 17 16 20 20 C 1.46899 * 110.99951 * 138.00048 * 19 18 17 21 21 C 1.50689 * 109.47245 * 169.99830 * 20 19 18 22 22 C 1.34858 * 125.89060 * 264.95789 * 21 20 19 23 23 C 1.40900 * 107.41627 * 179.80426 * 22 21 20 24 24 C 1.34850 * 107.41621 * 0.37840 * 23 22 21 25 25 N 1.36341 * 125.89234 * 84.99696 * 21 20 19 26 26 H 0.97003 * 125.63345 * 359.97438 * 25 21 20 27 27 C 1.47660 * 88.13941 * 26.18346 * 19 18 17 28 28 C 1.47064 * 87.88349 * 27.34056 * 11 10 9 29 29 H 0.97002 * 119.99982 * 359.97438 * 1 2 3 30 30 H 1.09000 * 113.28302 * 313.06292 * 9 7 2 31 31 H 1.08992 * 113.46843 * 105.56224 * 10 9 7 32 32 H 1.09004 * 113.51712 * 335.13349 * 10 9 7 33 33 H 1.09001 * 117.52664 * 145.15765 * 16 14 12 34 34 H 1.09005 * 117.56470 * 359.97438 * 16 14 12 35 35 H 1.09001 * 113.51881 * 359.02198 * 18 17 16 36 36 H 1.08996 * 113.51786 * 228.41175 * 18 17 16 37 37 H 1.09000 * 109.47085 * 49.99535 * 20 19 18 38 38 H 1.08996 * 109.46836 * 290.00035 * 20 19 18 39 39 H 1.07991 * 126.29023 * 0.02562 * 22 21 20 40 40 H 1.07999 * 126.29093 * 180.24309 * 23 22 21 41 41 H 1.08002 * 125.89234 * 179.89015 * 24 23 22 42 42 H 1.09002 * 113.51974 * 88.50816 * 27 19 18 43 43 H 1.08997 * 113.51842 * 219.12057 * 27 19 18 44 44 H 1.09000 * 113.46887 * 87.43952 * 28 11 10 45 45 H 1.09002 * 113.46664 * 217.87687 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.1410 -2.5940 -0.0010 11 7 5.1419 -2.0873 0.9500 12 6 6.4152 -2.3898 1.2718 13 8 6.9876 -3.2923 0.6984 14 6 7.1278 -1.6066 2.3441 15 1 6.5042 -1.2637 3.1698 16 6 8.2862 -0.7032 1.9094 17 6 8.5635 -1.9957 2.6621 18 6 9.3599 -3.2245 2.2306 19 7 10.3330 -2.8905 3.2898 20 6 10.7680 -4.0978 4.0047 21 6 11.9303 -3.7588 4.9019 22 6 13.2353 -3.9020 4.5934 23 6 13.9819 -3.4660 5.7059 24 6 13.1047 -3.0808 6.6549 25 7 11.8439 -3.2551 6.1660 26 1 11.0214 -3.0541 6.6392 27 6 9.2394 -2.2120 4.0136 28 6 4.1397 -1.1095 1.3998 29 1 -0.4850 0.8401 0.0004 30 1 3.9421 -0.5102 -0.7326 31 1 4.5633 -2.8801 -0.9643 32 1 3.4924 -3.3624 0.4197 33 1 8.4245 0.2336 2.4492 34 1 8.5335 -0.6755 0.8481 35 1 9.7690 -3.1461 1.2233 36 1 8.8358 -4.1647 2.4021 37 1 11.0743 -4.8562 3.2842 38 1 9.9438 -4.4803 4.6066 39 1 13.6346 -4.2782 3.6632 40 1 15.0589 -3.4461 5.7849 41 1 13.3573 -2.6960 7.6319 42 1 8.6821 -2.8724 4.6780 43 1 9.5478 -1.2860 4.4989 44 1 3.4902 -1.4858 2.1900 45 1 4.5609 -0.1308 1.6299 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277029985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:52 Heat of formation + Delta-G solvation = 124.313812 kcal Electronic energy + Delta-G solvation = -25228.819226 eV Core-core repulsion = 21636.894387 eV Total energy + Delta-G solvation = -3591.924839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.41818 -40.63588 -39.38818 -37.37645 -35.11946 -32.69077 -31.19669 -31.10144 -29.72291 -27.01195 -26.19185 -25.85565 -25.13097 -23.27310 -22.96012 -20.79673 -20.35440 -20.15164 -18.87360 -18.25378 -17.62585 -17.29599 -16.78135 -16.08876 -15.52667 -15.42799 -14.94094 -14.57334 -14.34133 -14.01081 -13.85997 -13.68947 -13.52533 -13.33560 -12.90367 -12.82076 -12.68173 -12.42438 -12.07332 -11.91060 -11.87742 -11.67570 -11.58960 -10.89968 -10.75442 -10.69910 -10.47799 -10.36183 -10.13432 -9.85311 -9.42818 -9.21790 -9.03775 -9.01090 -8.70389 -8.23201 -8.09528 -6.25236 -4.28221 2.02141 2.72927 2.84345 3.09769 3.17540 3.23452 3.26915 3.29799 3.61141 4.02688 4.15331 4.26687 4.42564 4.53314 4.66984 4.83599 4.96594 4.97462 5.04254 5.07629 5.09352 5.28002 5.32143 5.37461 5.51002 5.52836 5.59965 5.70045 5.73359 5.82525 5.89094 5.91282 5.96981 6.06578 6.08566 6.17042 6.20613 6.28896 6.37217 6.50567 6.76316 6.81578 6.95291 7.09466 7.36639 7.50038 8.26578 8.34630 8.58769 8.78267 9.35572 10.86647 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.002263 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.130548 B =12372.421113 C =12737.805557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.876 3.124 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.514 4.514 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.114 3.886 11 N -0.641 5.641 12 C 0.562 3.438 13 O -0.557 6.557 14 C -0.163 4.163 15 H 0.122 0.878 16 C -0.108 4.108 17 C -0.136 4.136 18 C 0.058 3.942 19 N -0.463 5.463 20 C 0.085 3.915 21 C 0.031 3.969 22 C -0.184 4.184 23 C -0.202 4.202 24 C -0.017 4.017 25 N -0.556 5.556 26 H 0.410 0.590 27 C 0.037 3.963 28 C 0.085 3.915 29 H 0.267 0.733 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.051 0.949 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.161 0.839 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.084 0.916 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.491 -3.508 12.365 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.185 1.185 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.008 4.008 11 N -0.374 5.374 12 C 0.351 3.649 13 O -0.437 6.437 14 C -0.184 4.184 15 H 0.140 0.860 16 C -0.146 4.146 17 C -0.137 4.137 18 C -0.070 4.070 19 N -0.186 5.186 20 C -0.044 4.044 21 C -0.082 4.082 22 C -0.209 4.209 23 C -0.227 4.227 24 C -0.148 4.148 25 N -0.151 5.151 26 H 0.245 0.755 27 C -0.091 4.091 28 C -0.038 4.038 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.116 0.884 38 H 0.069 0.931 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.178 0.822 42 H 0.090 0.910 43 H 0.104 0.896 44 H 0.102 0.898 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 22.347 -3.579 12.041 25.636 hybrid contribution -0.818 0.612 0.720 1.250 sum 21.529 -2.966 12.762 25.203 Atomic orbital electron populations 1.69893 1.06378 1.27354 1.49150 1.25020 0.94690 0.99211 0.93809 0.86885 0.80493 0.83488 0.78854 1.20119 1.21257 1.18455 1.20764 0.87448 0.94889 1.52036 0.90241 1.20790 0.96923 0.92799 0.92057 1.23115 0.86520 0.99433 0.91691 1.49891 1.09857 1.37420 1.40230 1.19027 0.80394 0.82975 0.82468 1.90635 1.66272 1.32140 1.54666 1.22090 0.90868 1.04494 1.00967 0.86035 1.22687 0.97653 0.93054 1.01158 1.21850 0.95334 0.98619 0.97911 1.23176 0.90435 0.95901 0.97499 1.69076 1.24533 1.17692 1.07261 1.21149 0.94061 0.93644 0.95497 1.20055 0.95977 1.06123 0.86076 1.20681 0.91687 1.08620 0.99943 1.20895 0.98861 1.08163 0.94771 1.21786 0.83321 1.09167 1.00571 1.41953 1.08056 1.51624 1.13500 0.75463 1.23476 0.91022 1.00238 0.94384 1.23982 0.86969 0.90763 1.02078 0.92334 0.92111 0.92013 0.90194 0.87529 0.87744 0.88979 0.90366 0.88442 0.93073 0.84910 0.84918 0.82166 0.91023 0.89614 0.89772 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.96 55.43 0.77 -24.53 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 19.52 27.15 -169.99 -4.61 14.91 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.36 5.72 56.52 0.32 -5.04 16 7 C -0.51 -13.03 9.37 -34.44 -0.32 -13.35 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 C -0.01 -0.13 2.98 -91.12 -0.27 -0.40 16 10 C 0.11 2.23 8.17 -8.50 -0.07 2.16 16 11 N -0.64 -11.99 3.69 -185.05 -0.68 -12.67 16 12 C 0.56 10.02 7.86 -10.99 -0.09 9.94 16 13 O -0.56 -11.22 16.07 5.55 0.09 -11.13 16 14 C -0.16 -2.24 6.02 -92.12 -0.55 -2.80 16 15 H 0.12 1.52 8.14 -51.93 -0.42 1.09 16 16 C -0.11 -1.31 10.24 -27.08 -0.28 -1.58 16 17 C -0.14 -1.65 3.13 -155.77 -0.49 -2.14 16 18 C 0.06 0.71 6.19 -6.77 -0.04 0.67 16 19 N -0.46 -5.08 6.31 -245.40 -1.55 -6.62 16 20 C 0.09 0.81 5.35 -4.98 -0.03 0.78 16 21 C 0.03 0.30 6.75 -81.79 -0.55 -0.25 16 22 C -0.18 -1.95 10.77 -39.77 -0.43 -2.38 16 23 C -0.20 -1.93 10.86 -39.78 -0.43 -2.36 16 24 C -0.02 -0.14 11.94 -16.75 -0.20 -0.34 16 25 N -0.56 -4.59 6.07 -9.12 -0.06 -4.64 16 26 H 0.41 2.41 8.96 -40.82 -0.37 2.04 16 27 C 0.04 0.37 7.74 -6.77 -0.05 0.32 16 28 C 0.08 1.60 7.43 -8.37 -0.06 1.53 16 29 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.06 1.30 7.03 -51.93 -0.37 0.94 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.08 1.00 7.88 -51.93 -0.41 0.60 16 37 H 0.10 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.05 0.43 7.31 -51.93 -0.38 0.05 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.16 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.07 0.63 7.42 -51.93 -0.39 0.25 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.56 8.10 -51.93 -0.42 1.14 16 45 H 0.06 1.06 7.15 -51.93 -0.37 0.69 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -30.50 372.86 -11.36 -41.86 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.98 Total: 5.49 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -3.96 Total: -8.28 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -1.51 Total: -48.47 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.61 Total: 14.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.50 -11.36 -41.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277029985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.173 kcal (2) G-P(sol) polarization free energy of solvation -30.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds