Wall clock time and date at job start Tue Mar 31 2020 11:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.54431 * 112.97180 * 2 1
4 4 N 1.48736 * 104.32563 * 97.65616 * 3 2 1
5 5 C 1.48744 * 103.50325 * 41.75655 * 4 3 2
6 6 C 1.54421 * 104.32533 * 318.24561 * 5 4 3
7 7 H 1.09000 * 112.48664 * 262.00111 * 6 5 4
8 8 C 1.54282 * 108.75093 * 136.71416 * 6 5 4
9 9 N 1.48098 * 104.75248 * 272.54976 * 8 6 5
10 10 C 1.34783 * 127.84050 * 140.12286 * 9 8 6
11 11 O 1.21586 * 119.99193 * 180.02562 * 10 9 8
12 12 N 1.34771 * 120.00461 * 0.03060 * 10 9 8
13 13 C 1.39954 * 120.00087 * 174.85481 * 12 10 9
14 14 C 1.39290 * 119.94247 * 325.51890 * 13 12 10
15 15 C 1.38490 * 120.42694 * 179.76771 * 14 13 12
16 16 C 1.37681 * 120.32128 * 0.51172 * 15 14 13
17 17 C 1.40741 * 119.88378 * 359.75261 * 16 15 14
18 18 C 1.41409 * 120.21269 * 179.97438 * 17 16 15
19 19 H 1.08001 * 120.00173 * 205.18650 * 18 17 16
20 20 C 1.39931 * 119.99974 * 25.18060 * 18 17 16
21 21 N 1.30829 * 119.99752 * 16.78304 * 20 18 17
22 22 Si 1.86800 * 119.99900 * 196.78174 * 20 18 17
23 23 H 1.48491 * 109.47269 * 90.00320 * 22 20 18
24 24 H 1.48506 * 109.46819 * 210.00349 * 22 20 18
25 25 H 1.48496 * 109.47423 * 329.99908 * 22 20 18
26 26 C 1.38230 * 119.94990 * 145.80290 * 13 12 10
27 27 C 1.48090 * 104.30401 * 320.12639 * 9 8 6
28 28 H 1.09000 * 109.46848 * 301.67305 * 1 2 3
29 29 H 1.09002 * 109.47033 * 61.66478 * 1 2 3
30 30 H 1.08991 * 109.46970 * 181.67168 * 1 2 3
31 31 H 1.08993 * 110.46155 * 338.94752 * 3 2 1
32 32 H 1.08993 * 110.45999 * 216.36649 * 3 2 1
33 33 H 1.00898 * 111.00387 * 282.62303 * 4 3 2
34 34 H 1.09004 * 110.45661 * 76.94977 * 5 4 3
35 35 H 1.08991 * 110.46518 * 199.52826 * 5 4 3
36 36 H 1.08999 * 110.38123 * 31.37360 * 8 6 5
37 37 H 1.09005 * 110.38139 * 153.62160 * 8 6 5
38 38 H 0.97006 * 119.99795 * 354.84631 * 12 10 9
39 39 H 1.07994 * 119.78526 * 0.02562 * 14 13 12
40 40 H 1.07999 * 119.84214 * 180.24284 * 15 14 13
41 41 H 1.08001 * 120.05720 * 179.72279 * 16 15 14
42 42 H 0.97003 * 119.99835 * 180.02562 * 21 20 18
43 43 H 1.08004 * 120.16018 * 359.94595 * 26 13 12
44 44 H 1.09002 * 110.37769 * 158.69954 * 27 9 8
45 45 H 1.09005 * 110.37850 * 280.94017 * 27 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.1327 1.4218 0.0000
4 7 2.4531 1.6857 1.4283
5 6 3.0316 0.3984 1.8980
6 6 2.1282 -0.6808 1.2628
7 1 1.3678 -1.0469 1.9527
8 6 3.0200 -1.8132 0.7127
9 7 3.3695 -1.3844 -0.6611
10 6 4.5555 -1.5082 -1.2894
11 8 4.6854 -1.1023 -2.4281
12 7 5.5974 -2.0818 -0.6555
13 6 6.7957 -2.3082 -1.3421
14 6 6.7699 -2.6415 -2.6943
15 6 7.9499 -2.8630 -3.3846
16 6 9.1619 -2.7662 -2.7386
17 6 9.2032 -2.4356 -1.3712
18 6 10.4441 -2.3348 -0.7006
19 1 10.4948 -2.4877 0.3673
20 6 11.6064 -2.0372 -1.4208
21 7 11.5187 -1.5347 -2.6255
22 14 13.2830 -2.3573 -0.6619
23 1 13.7244 -3.7343 -0.9995
24 1 14.2633 -1.3782 -1.1963
25 1 13.1942 -2.2138 0.8135
26 6 8.0026 -2.2064 -0.6759
27 6 2.1201 -0.7886 -1.1874
28 1 -0.3633 0.5396 0.8746
29 1 -0.3633 0.4878 -0.9046
30 1 -0.3633 -1.0271 0.0300
31 1 1.4040 2.1446 -0.3668
32 1 3.0385 1.4517 -0.6055
33 1 1.6207 1.9192 1.9485
34 1 4.0579 0.2912 1.5467
35 1 2.9917 0.3370 2.9855
36 1 3.9200 -1.9161 1.3189
37 1 2.4690 -2.7535 0.6900
38 1 5.5167 -2.3377 0.2767
39 1 5.8239 -2.7238 -3.2086
40 1 7.9191 -3.1171 -4.4339
41 1 10.0792 -2.9441 -3.2801
42 1 12.3244 -1.3287 -3.1249
43 1 8.0234 -1.9516 0.3734
44 1 2.3400 -0.1172 -2.0174
45 1 1.4311 -1.5712 -1.5055
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001579474243.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:30
Heat of formation + Delta-G solvation = 8.787435 kcal
Electronic energy + Delta-G solvation = -26311.577222 eV
Core-core repulsion = 22714.642783 eV
Total energy + Delta-G solvation = -3596.934439 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 315.169 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.01449 -39.26796 -37.19302 -35.17722 -34.38523 -33.10239 -32.30238 -30.53650
-29.77916 -28.34247 -26.53704 -25.99426 -25.18556 -24.21498 -21.85792 -21.22000
-20.86766 -19.54476 -19.16047 -17.95998 -17.34941 -16.59088 -15.93204 -15.60738
-15.18678 -14.96047 -14.67820 -14.48915 -14.37117 -14.04153 -13.59699 -13.28402
-13.03858 -12.85808 -12.75403 -12.54978 -12.20076 -12.18507 -11.82766 -11.64156
-11.54426 -11.16206 -11.13908 -11.08626 -11.01539 -10.90252 -10.86409 -10.46636
-10.17360 -9.58653 -9.52803 -9.19221 -9.10360 -8.92486 -8.52595 -7.41510
-6.85566 -6.67450 -4.31867 2.67484 2.84700 2.92093 3.10345 3.13513
3.26041 3.64232 3.93625 3.95701 3.97540 4.15977 4.39758 4.59082
4.70601 4.78291 4.83877 4.89886 5.00512 5.26096 5.27002 5.31468
5.35584 5.52731 5.56789 5.62349 5.68270 5.73115 5.77108 5.86210
5.87743 6.17896 6.34341 6.35117 6.60954 6.79649 6.94821 6.99426
7.08021 7.08265 7.27619 7.41814 7.67232 7.84318 8.07170 8.12546
8.26874 8.42358 8.67092 8.91824 8.95494 9.06264 10.25448
Molecular weight = 315.17amu
Principal moments of inertia in cm(-1)
A = 0.023392 B = 0.002928 C = 0.002756
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1196.707690 B = 9559.301038 C =10157.668720
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.111 4.111
3 C 0.051 3.949
4 N -0.664 5.664
5 C 0.044 3.956
6 C -0.132 4.132
7 H 0.096 0.904
8 C 0.110 3.890
9 N -0.642 5.642
10 C 0.724 3.276
11 O -0.567 6.567
12 N -0.678 5.678
13 C 0.171 3.829
14 C -0.226 4.226
15 C -0.094 4.094
16 C -0.170 4.170
17 C 0.124 3.876
18 C -0.465 4.465
19 H 0.077 0.923
20 C 0.076 3.924
21 N -0.794 5.794
22 Si 0.908 3.092
23 H -0.268 1.268
24 H -0.279 1.279
25 H -0.263 1.263
26 C -0.245 4.245
27 C 0.138 3.862
28 H 0.057 0.943
29 H 0.062 0.938
30 H 0.060 0.940
31 H 0.075 0.925
32 H 0.086 0.914
33 H 0.333 0.667
34 H 0.083 0.917
35 H 0.075 0.925
36 H 0.077 0.923
37 H 0.069 0.931
38 H 0.394 0.606
39 H 0.100 0.900
40 H 0.091 0.909
41 H 0.119 0.881
42 H 0.280 0.720
43 H 0.094 0.906
44 H 0.085 0.915
45 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.329 1.159 8.630 21.200
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C -0.114 4.114
3 C -0.079 4.079
4 N -0.289 5.289
5 C -0.085 4.085
6 C -0.153 4.153
7 H 0.114 0.886
8 C -0.015 4.015
9 N -0.381 5.381
10 C 0.427 3.573
11 O -0.442 6.442
12 N -0.324 5.324
13 C 0.079 3.921
14 C -0.247 4.247
15 C -0.113 4.113
16 C -0.189 4.189
17 C 0.121 3.879
18 C -0.495 4.495
19 H 0.095 0.905
20 C -0.141 4.141
21 N -0.420 5.420
22 Si 0.733 3.267
23 H -0.193 1.193
24 H -0.204 1.204
25 H -0.187 1.187
26 C -0.267 4.267
27 C 0.014 3.986
28 H 0.076 0.924
29 H 0.081 0.919
30 H 0.079 0.921
31 H 0.093 0.907
32 H 0.104 0.896
33 H 0.148 0.852
34 H 0.102 0.898
35 H 0.094 0.906
36 H 0.095 0.905
37 H 0.087 0.913
38 H 0.228 0.772
39 H 0.118 0.882
40 H 0.109 0.891
41 H 0.137 0.863
42 H 0.091 0.909
43 H 0.112 0.888
44 H 0.104 0.896
45 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -18.323 1.975 7.440 19.874
hybrid contribution -0.099 -0.839 0.868 1.211
sum -18.422 1.137 8.308 20.241
Atomic orbital electron populations
1.21616 0.92464 1.02239 1.02136 1.22971 0.95936 0.97263 0.95239
1.23228 1.00459 0.93223 0.90971 1.63495 1.31484 1.30627 1.03285
1.23214 0.99131 0.86764 0.99425 1.23634 0.98108 0.96916 0.96688
0.88555 1.22254 0.98769 0.96738 0.83689 1.47971 1.09778 1.64906
1.15484 1.15356 0.78802 0.78925 0.84187 1.90957 1.82056 1.54314
1.16900 1.42607 1.11922 1.63608 1.14258 1.17230 0.82544 1.00103
0.92237 1.20312 0.97452 1.13466 0.93488 1.20575 0.92846 1.00400
0.97516 1.21359 0.96328 1.05363 0.95879 1.17348 0.91448 0.87351
0.91791 1.19505 0.91270 1.43176 0.95584 0.90529 1.25884 1.01372
0.92304 0.94583 1.69842 1.31191 1.29786 1.11154 0.86315 0.81012
0.79011 0.80350 1.19337 1.20386 1.18715 1.20661 0.90910 1.15690
0.99400 1.22078 0.84154 0.96477 0.95903 0.92351 0.91899 0.92065
0.90654 0.89590 0.85156 0.89834 0.90641 0.90509 0.91297 0.77207
0.88165 0.89097 0.86333 0.90934 0.88826 0.89632 0.91641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -0.75 8.77 37.16 0.33 -0.43 16
2 C -0.11 -0.92 1.07 -151.80 -0.16 -1.09 16
3 C 0.05 0.50 6.51 -2.06 -0.01 0.49 16
4 N -0.66 -6.36 7.66 -109.33 -0.84 -7.20 16
5 C 0.04 0.41 6.87 -2.06 -0.01 0.39 16
6 C -0.13 -1.03 3.76 -87.91 -0.33 -1.36 16
7 H 0.10 0.58 7.97 -51.93 -0.41 0.16 16
8 C 0.11 1.05 6.18 -2.49 -0.02 1.03 16
9 N -0.64 -8.74 3.31 -175.23 -0.58 -9.32 16
10 C 0.72 13.68 8.30 -86.92 -0.72 12.96 16
11 O -0.57 -13.19 14.35 5.29 0.08 -13.12 16
12 N -0.68 -12.82 5.31 -14.27 -0.08 -12.90 16
13 C 0.17 4.01 6.25 -83.76 -0.52 3.49 16
14 C -0.23 -5.60 8.66 -39.10 -0.34 -5.93 16
15 C -0.09 -2.37 10.02 -39.69 -0.40 -2.77 16
16 C -0.17 -4.55 8.69 -38.84 -0.34 -4.89 16
17 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16
18 C -0.47 -12.45 9.05 -37.74 -0.34 -12.79 16
19 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16
20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16
21 N -0.79 -21.03 10.94 55.55 0.61 -20.42 16
22 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16
23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
24 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16
25 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16
26 C -0.24 -6.06 9.70 -38.69 -0.38 -6.44 16
27 C 0.14 1.55 5.87 -2.50 -0.01 1.54 16
28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
31 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16
32 H 0.09 1.13 7.62 -51.93 -0.40 0.74 16
33 H 0.33 2.47 8.93 -39.29 -0.35 2.12 16
34 H 0.08 0.98 7.62 -51.93 -0.40 0.59 16
35 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
36 H 0.08 0.70 6.43 -51.93 -0.33 0.36 16
37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
38 H 0.39 6.05 7.20 -40.82 -0.29 5.76 16
39 H 0.10 2.48 6.48 -52.49 -0.34 2.14 16
40 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16
41 H 0.12 3.26 6.17 -52.49 -0.32 2.93 16
42 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16
43 H 0.09 2.15 8.06 -52.48 -0.42 1.72 16
44 H 0.09 1.11 7.50 -51.93 -0.39 0.72 16
45 H 0.07 0.66 7.98 -51.93 -0.41 0.25 16
LS Contribution 357.72 15.07 5.39 5.39
Total: -1.00 -31.98 357.72 -10.96 -42.94
By element:
Atomic # 1 Polarization: 18.54 SS G_CDS: -6.57 Total: 11.97 kcal
Atomic # 6 Polarization: -7.25 SS G_CDS: -3.94 Total: -11.19 kcal
Atomic # 7 Polarization: -48.96 SS G_CDS: -0.89 Total: -49.84 kcal
Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.12 kcal
Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -31.98 -10.96 -42.94 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001579474243.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 51.728 kcal
(2) G-P(sol) polarization free energy of solvation -31.976 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.752 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal
(6) G-S(sol) free energy of system = (1) + (5) 8.787 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds