Wall clock time and date at job start Tue Mar 31 2020 10:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38114 * 120.03842 * 2 1 4 4 C 1.38278 * 120.07356 * 179.72032 * 3 2 1 5 5 C 1.38285 * 120.14044 * 0.28175 * 4 3 2 6 6 C 1.38111 * 120.07047 * 359.95347 * 5 4 3 7 7 C 1.50703 * 120.03607 * 180.02562 * 6 5 4 8 8 C 1.38872 * 119.92972 * 0.02562 * 6 5 4 9 9 N 1.39927 * 120.07071 * 180.02562 * 8 6 5 10 10 C 1.34775 * 119.99780 * 233.44990 * 9 8 6 11 11 O 1.21282 * 120.00081 * 4.13578 * 10 9 8 12 12 C 1.50702 * 119.99619 * 184.14411 * 10 9 8 13 13 N 1.46907 * 109.46796 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99665 * 189.99701 * 13 12 10 15 15 C 1.50698 * 109.46784 * 165.02976 * 14 13 12 16 16 H 1.08002 * 120.00278 * 3.21254 * 15 14 13 17 17 C 1.37878 * 120.00047 * 183.21361 * 15 14 13 18 18 N 1.31520 * 119.99541 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47008 * 59.99968 * 19 17 15 21 21 H 1.48497 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47204 * 300.00041 * 19 17 15 23 23 C 1.46903 * 110.99873 * 66.04746 * 13 12 10 24 24 C 1.52998 * 109.47354 * 63.76215 * 23 13 12 25 25 C 1.47202 * 109.46900 * 185.52646 * 24 23 13 26 26 N 7.76162 * 91.66107 * 225.56736 * 2 1 3 27 27 H 1.08997 * 109.47297 * 83.12376 * 1 2 3 28 28 H 1.09002 * 109.47187 * 203.12618 * 1 2 3 29 29 H 1.09001 * 109.47084 * 323.12278 * 1 2 3 30 30 H 1.07995 * 119.96186 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.93037 * 180.25391 * 4 3 2 32 32 H 1.08001 * 119.96522 * 179.97438 * 5 4 3 33 33 H 1.08989 * 109.47508 * 89.99816 * 7 6 5 34 34 H 1.09000 * 109.46913 * 209.99786 * 7 6 5 35 35 H 1.09007 * 109.46834 * 329.99345 * 7 6 5 36 36 H 0.97002 * 120.00145 * 53.45214 * 9 8 6 37 37 H 1.09002 * 109.46930 * 299.99184 * 12 10 9 38 38 H 1.08993 * 109.47378 * 59.99879 * 12 10 9 39 39 H 1.09002 * 109.47222 * 285.02778 * 14 13 12 40 40 H 1.08995 * 109.46981 * 45.02749 * 14 13 12 41 41 H 0.97001 * 119.99458 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.46751 * 183.76505 * 23 13 12 43 43 H 1.09007 * 109.46822 * 303.76252 * 23 13 12 44 44 H 1.08999 * 109.46886 * 305.52568 * 24 23 13 45 45 H 1.08997 * 109.46784 * 65.52890 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5811 1.1965 0.0058 5 6 4.2762 0.0010 0.0058 6 6 3.5908 -1.1980 0.0009 7 6 4.3491 -2.5003 0.0015 8 6 2.2021 -1.2023 -0.0045 9 7 1.5047 -2.4154 -0.0089 10 6 0.5699 -2.6518 -0.9506 11 8 0.3856 -1.8458 -1.8380 12 6 -0.2465 -3.9175 -0.9007 13 7 -1.1882 -3.9375 -2.0280 14 6 -2.1585 -5.0310 -1.8841 15 6 -3.3099 -4.8087 -2.8306 16 1 -3.2954 -3.9703 -3.5112 17 6 -4.3820 -5.6757 -2.8277 18 7 -4.3995 -6.6970 -1.9991 19 14 -5.8095 -5.3998 -4.0004 20 1 -5.3158 -5.4445 -5.4003 21 1 -6.8268 -6.4630 -3.8007 22 1 -6.4204 -4.0730 -3.7331 23 6 -0.4746 -4.0321 -3.3086 24 6 0.2779 -5.3625 -3.3760 25 6 1.0978 -5.4010 -4.5979 26 7 1.7319 -5.4314 -5.5400 27 1 -0.3634 0.1230 -1.0202 28 1 -0.3634 -0.9451 0.4036 29 1 -0.3633 0.8221 0.6167 30 1 1.6583 2.1309 0.0004 31 1 4.1194 2.1328 0.0100 32 1 5.3562 0.0050 0.0100 33 1 4.5279 -2.8162 1.0292 34 1 3.7648 -3.2612 -0.5160 35 1 5.3030 -2.3655 -0.5085 36 1 1.6940 -3.0861 0.6657 37 1 0.4166 -4.7803 -0.9655 38 1 -0.8014 -3.9553 0.0366 39 1 -1.6744 -5.9794 -2.1172 40 1 -2.5297 -5.0548 -0.8595 41 1 -5.1539 -7.3067 -1.9969 42 1 -1.1908 -3.9777 -4.1285 43 1 0.2350 -3.2087 -3.3907 44 1 0.9227 -5.4599 -2.5026 45 1 -0.4379 -6.1843 -3.3928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035982112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:25 Heat of formation + Delta-G solvation = 24.798701 kcal Electronic energy + Delta-G solvation = -26228.547581 eV Core-core repulsion = 22632.307443 eV Total energy + Delta-G solvation = -3596.240138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.75035 -38.88966 -37.24508 -35.85547 -34.66545 -33.57661 -32.68545 -31.13423 -30.42334 -28.48516 -27.08077 -26.70285 -25.59492 -23.68724 -22.20209 -21.08666 -20.44258 -19.76275 -17.73265 -17.44796 -16.86927 -16.22956 -16.03589 -15.42278 -15.31655 -14.65182 -14.55899 -14.22101 -14.05724 -13.83589 -13.70557 -13.48401 -13.16778 -13.09143 -13.02332 -12.76180 -12.37926 -12.13538 -12.03254 -11.89361 -11.65508 -11.58909 -11.38482 -11.31121 -11.20404 -11.09575 -10.83404 -10.67689 -10.25767 -10.05426 -9.93813 -9.54391 -9.20346 -8.62161 -8.49858 -8.27834 -7.44796 -6.10597 -4.11346 1.20562 1.30238 2.80835 3.05836 3.09537 3.11601 3.32333 3.36246 3.40482 3.65595 4.27569 4.40161 4.66502 4.72507 4.86046 4.90342 4.95501 5.13561 5.25961 5.29325 5.32378 5.39043 5.42330 5.44993 5.49344 5.64041 5.68357 5.71582 5.72450 5.86052 5.88966 5.98485 6.24936 6.31402 6.34005 6.37431 6.50095 6.56770 6.68617 7.00084 7.03932 7.11303 7.41685 7.69359 7.82612 7.93465 8.01799 8.34888 8.41298 8.96111 9.53657 10.99822 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.003479 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.977990 B = 8045.510787 C = 9013.235145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.116 4.116 4 C -0.123 4.123 5 C -0.119 4.119 6 C -0.098 4.098 7 C -0.113 4.113 8 C 0.145 3.855 9 N -0.686 5.686 10 C 0.511 3.489 11 O -0.494 6.494 12 C 0.030 3.970 13 N -0.507 5.507 14 C 0.187 3.813 15 C -0.507 4.507 16 H 0.065 0.935 17 C 0.058 3.942 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.276 1.276 23 C 0.066 3.934 24 C -0.075 4.075 25 C 0.224 3.776 26 N -0.460 5.460 27 H 0.087 0.913 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.406 0.594 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.002 0.998 40 H 0.035 0.965 41 H 0.262 0.738 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.315 9.140 9.876 20.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.070 4.070 3 C -0.135 4.135 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.100 4.100 7 C -0.170 4.170 8 C 0.052 3.948 9 N -0.336 5.336 10 C 0.299 3.701 11 O -0.366 6.366 12 C -0.102 4.102 13 N -0.229 5.229 14 C 0.063 3.937 15 C -0.546 4.546 16 H 0.083 0.917 17 C -0.143 4.143 18 N -0.538 5.538 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 C -0.065 4.065 24 C -0.117 4.117 25 C -0.094 4.094 26 N -0.137 5.137 27 H 0.106 0.894 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.077 0.923 38 H 0.122 0.878 39 H 0.020 0.980 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 15.648 9.918 7.863 20.126 hybrid contribution -0.523 -1.058 0.214 1.199 sum 15.126 8.860 8.077 19.301 Atomic orbital electron populations 1.20859 0.90417 1.02018 1.03354 1.19949 0.96659 0.91879 0.98535 1.20888 0.94112 0.97213 1.01268 1.21068 0.94222 0.97881 1.00983 1.20813 0.99479 0.91565 1.01870 1.19857 0.92205 0.95997 1.01921 1.20723 0.99848 0.94294 1.02121 1.17273 0.89708 0.85620 1.02231 1.43602 1.39964 1.17262 1.32735 1.21109 0.79117 0.89089 0.80814 1.90687 1.65263 1.47003 1.33660 1.22063 0.95787 0.93172 0.99136 1.62158 1.13133 1.49098 0.98546 1.19927 0.89341 0.86010 0.98458 1.21074 1.02555 1.11181 1.19751 0.91678 1.24936 0.98361 0.95117 0.95928 1.69925 1.31618 1.15060 1.37232 0.86575 0.81864 0.77828 0.81290 1.20232 1.21428 1.20115 1.22247 0.97247 0.92470 0.94486 1.20269 0.97312 1.05467 0.88655 1.29246 0.93089 0.92393 0.94628 1.81140 1.11082 1.09766 1.11761 0.89448 0.91931 0.92281 0.85946 0.86167 0.86077 0.91213 0.91464 0.91443 0.75807 0.92266 0.87769 0.98024 0.94693 0.92803 0.89031 0.89939 0.88686 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.44 8.27 36.00 0.30 -1.14 16 2 C -0.07 -0.87 5.49 -104.43 -0.57 -1.44 16 3 C -0.12 -1.29 9.72 -39.61 -0.39 -1.68 16 4 C -0.12 -1.22 10.04 -39.55 -0.40 -1.61 16 5 C -0.12 -1.17 9.70 -39.61 -0.38 -1.56 16 6 C -0.10 -1.04 5.90 -104.43 -0.62 -1.66 16 7 C -0.11 -0.93 9.69 36.01 0.35 -0.58 16 8 C 0.14 1.76 5.80 -83.69 -0.49 1.28 16 9 N -0.69 -7.55 3.86 -9.86 -0.04 -7.59 16 10 C 0.51 7.15 5.72 -10.98 -0.06 7.09 16 11 O -0.49 -8.73 11.60 5.56 0.06 -8.66 16 12 C 0.03 0.42 5.27 -4.97 -0.03 0.39 16 13 N -0.51 -9.30 4.40 -237.51 -1.05 -10.35 16 14 C 0.19 4.11 4.56 -4.97 -0.02 4.09 16 15 C -0.51 -12.97 8.63 -34.44 -0.30 -13.27 16 16 H 0.07 1.70 7.33 -52.49 -0.38 1.31 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -24.67 13.29 55.43 0.74 -23.94 16 19 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.07 1.14 4.80 -3.82 -0.02 1.12 16 24 C -0.08 -1.11 5.02 -29.52 -0.15 -1.26 16 25 C 0.22 3.67 15.43 -20.76 -0.32 3.35 16 26 N -0.46 -8.47 18.54 42.16 0.78 -7.69 16 27 H 0.09 1.34 7.11 -51.93 -0.37 0.97 16 28 H 0.06 0.85 6.30 -51.93 -0.33 0.52 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 30 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.07 0.46 8.14 -51.94 -0.42 0.04 16 34 H 0.07 0.58 7.46 -51.93 -0.39 0.20 16 35 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.41 3.18 8.72 -40.82 -0.36 2.83 16 37 H 0.06 0.68 6.03 -51.93 -0.31 0.37 16 38 H 0.10 1.35 7.87 -51.93 -0.41 0.94 16 39 H 0.00 0.05 5.91 -51.93 -0.31 -0.26 16 40 H 0.04 0.83 7.83 -51.93 -0.41 0.42 16 41 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.09 1.78 7.14 -51.93 -0.37 1.41 16 43 H 0.08 1.47 5.82 -51.93 -0.30 1.16 16 44 H 0.10 1.15 6.12 -51.93 -0.32 0.83 16 45 H 0.12 1.92 6.48 -51.93 -0.34 1.59 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -31.25 368.99 -8.40 -39.66 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -6.25 Total: 2.67 kcal Atomic # 6 Polarization: -2.26 SS G_CDS: -3.19 Total: -5.44 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.43 Total: -49.57 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: 0.06 Total: -8.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.25 -8.40 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035982112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.456 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds