Wall clock time and date at job start Tue Mar 31 2020 10:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38114 * 120.03842 * 2 1 4 4 C 1.38278 * 120.07356 * 179.72032 * 3 2 1 5 5 C 1.38285 * 120.14044 * 0.28175 * 4 3 2 6 6 C 1.38111 * 120.07047 * 359.95347 * 5 4 3 7 7 C 1.50703 * 120.03607 * 180.02562 * 6 5 4 8 8 C 1.38872 * 119.92972 * 0.02562 * 6 5 4 9 9 N 1.39927 * 120.07071 * 180.02562 * 8 6 5 10 10 C 1.34775 * 119.99780 * 233.44990 * 9 8 6 11 11 O 1.21282 * 120.00081 * 4.13578 * 10 9 8 12 12 C 1.50702 * 119.99619 * 184.14411 * 10 9 8 13 13 N 1.46907 * 109.46796 * 179.97438 * 12 10 9 14 14 C 1.46904 * 110.99665 * 189.99701 * 13 12 10 15 15 C 1.50698 * 109.46784 * 165.02976 * 14 13 12 16 16 H 1.08002 * 120.00278 * 3.21254 * 15 14 13 17 17 C 1.37878 * 120.00047 * 183.21361 * 15 14 13 18 18 N 1.31520 * 119.99541 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00194 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47008 * 59.99968 * 19 17 15 21 21 H 1.48497 * 109.47232 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47204 * 300.00041 * 19 17 15 23 23 C 1.46903 * 110.99873 * 66.04746 * 13 12 10 24 24 C 1.52998 * 109.47354 * 63.76215 * 23 13 12 25 25 C 1.47202 * 109.46900 * 185.52646 * 24 23 13 26 26 N 7.76162 * 91.66107 * 225.56736 * 2 1 3 27 27 H 1.08997 * 109.47297 * 83.12376 * 1 2 3 28 28 H 1.09002 * 109.47187 * 203.12618 * 1 2 3 29 29 H 1.09001 * 109.47084 * 323.12278 * 1 2 3 30 30 H 1.07995 * 119.96186 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.93037 * 180.25391 * 4 3 2 32 32 H 1.08001 * 119.96522 * 179.97438 * 5 4 3 33 33 H 1.08989 * 109.47508 * 89.99816 * 7 6 5 34 34 H 1.09000 * 109.46913 * 209.99786 * 7 6 5 35 35 H 1.09007 * 109.46834 * 329.99345 * 7 6 5 36 36 H 0.97002 * 120.00145 * 53.45214 * 9 8 6 37 37 H 1.09002 * 109.46930 * 299.99184 * 12 10 9 38 38 H 1.08993 * 109.47378 * 59.99879 * 12 10 9 39 39 H 1.09002 * 109.47222 * 285.02778 * 14 13 12 40 40 H 1.08995 * 109.46981 * 45.02749 * 14 13 12 41 41 H 0.97001 * 119.99458 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.46751 * 183.76505 * 23 13 12 43 43 H 1.09007 * 109.46822 * 303.76252 * 23 13 12 44 44 H 1.08999 * 109.46886 * 305.52568 * 24 23 13 45 45 H 1.08997 * 109.46784 * 65.52890 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1956 0.0000 4 6 3.5811 1.1965 0.0058 5 6 4.2762 0.0010 0.0058 6 6 3.5908 -1.1980 0.0009 7 6 4.3491 -2.5003 0.0015 8 6 2.2021 -1.2023 -0.0045 9 7 1.5047 -2.4154 -0.0089 10 6 0.5699 -2.6518 -0.9506 11 8 0.3856 -1.8458 -1.8380 12 6 -0.2465 -3.9175 -0.9007 13 7 -1.1882 -3.9375 -2.0280 14 6 -2.1585 -5.0310 -1.8841 15 6 -3.3099 -4.8087 -2.8306 16 1 -3.2954 -3.9703 -3.5112 17 6 -4.3820 -5.6757 -2.8277 18 7 -4.3995 -6.6970 -1.9991 19 14 -5.8095 -5.3998 -4.0004 20 1 -5.3158 -5.4445 -5.4003 21 1 -6.8268 -6.4630 -3.8007 22 1 -6.4204 -4.0730 -3.7331 23 6 -0.4746 -4.0321 -3.3086 24 6 0.2779 -5.3625 -3.3760 25 6 1.0978 -5.4010 -4.5979 26 7 1.7319 -5.4314 -5.5400 27 1 -0.3634 0.1230 -1.0202 28 1 -0.3634 -0.9451 0.4036 29 1 -0.3633 0.8221 0.6167 30 1 1.6583 2.1309 0.0004 31 1 4.1194 2.1328 0.0100 32 1 5.3562 0.0050 0.0100 33 1 4.5279 -2.8162 1.0292 34 1 3.7648 -3.2612 -0.5160 35 1 5.3030 -2.3655 -0.5085 36 1 1.6940 -3.0861 0.6657 37 1 0.4166 -4.7803 -0.9655 38 1 -0.8014 -3.9553 0.0366 39 1 -1.6744 -5.9794 -2.1172 40 1 -2.5297 -5.0548 -0.8595 41 1 -5.1539 -7.3067 -1.9969 42 1 -1.1908 -3.9777 -4.1285 43 1 0.2350 -3.2087 -3.3907 44 1 0.9227 -5.4599 -2.5026 45 1 -0.4379 -6.1843 -3.3928 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035982112.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:24 Heat of formation + Delta-G solvation = 6.273354 kcal Electronic energy + Delta-G solvation = -26229.350900 eV Core-core repulsion = 22632.307443 eV Total energy + Delta-G solvation = -3597.043457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72979 -39.95973 -38.53208 -37.26360 -35.65981 -34.64171 -34.39044 -32.20504 -31.59709 -29.92324 -28.20186 -27.49464 -26.91973 -25.33269 -23.29028 -21.94121 -21.68957 -20.90522 -19.03005 -18.46082 -18.17532 -17.87992 -17.06872 -16.73396 -16.29885 -16.17165 -15.87016 -15.37005 -15.17973 -14.89539 -14.80002 -14.71971 -14.40752 -14.16749 -13.97504 -13.80917 -13.58572 -13.50069 -13.37881 -13.02793 -12.94062 -12.77533 -12.68807 -12.62138 -12.46756 -12.40006 -12.10678 -12.04507 -11.90824 -11.56440 -11.35478 -10.92201 -10.51762 -10.49669 -9.43788 -9.14958 -8.89287 -8.11793 -6.16820 0.37619 0.47539 1.46426 1.47239 1.54385 1.71825 1.73728 1.76843 2.12917 2.47788 2.84247 2.97057 3.22953 3.50158 3.85200 3.92709 3.98131 4.12566 4.14955 4.17626 4.40531 4.42103 4.48814 4.54121 4.61035 4.64828 4.69457 4.80411 4.84931 4.86758 4.91903 4.98625 5.21120 5.23502 5.36724 5.38254 5.40930 5.51840 5.54851 5.67007 5.71833 5.75766 6.13467 6.18458 6.34909 6.49200 6.56202 6.72001 6.97141 7.37407 7.51298 8.97215 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.003479 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.977990 B = 8045.510787 C = 9013.235145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.123 4.123 5 C -0.123 4.123 6 C -0.103 4.103 7 C -0.112 4.112 8 C 0.123 3.877 9 N -0.667 5.667 10 C 0.516 3.484 11 O -0.536 6.536 12 C 0.030 3.970 13 N -0.524 5.524 14 C 0.202 3.798 15 C -0.517 4.517 16 H 0.052 0.948 17 C 0.014 3.986 18 N -0.925 5.925 19 Si 0.947 3.053 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.276 1.276 23 C 0.074 3.926 24 C -0.062 4.062 25 C 0.243 3.757 26 N -0.494 5.494 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.422 0.578 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.004 0.996 40 H 0.019 0.981 41 H 0.263 0.737 42 H 0.063 0.937 43 H 0.080 0.920 44 H 0.131 0.869 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.273 9.251 10.959 22.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.141 4.141 5 C -0.141 4.141 6 C -0.105 4.105 7 C -0.168 4.168 8 C 0.029 3.971 9 N -0.317 5.317 10 C 0.304 3.696 11 O -0.411 6.411 12 C -0.101 4.101 13 N -0.247 5.247 14 C 0.076 3.924 15 C -0.556 4.556 16 H 0.071 0.929 17 C -0.184 4.184 18 N -0.566 5.566 19 Si 0.774 3.226 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.201 1.201 23 C -0.056 4.056 24 C -0.103 4.103 25 C -0.074 4.074 26 N -0.172 5.172 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.164 0.836 32 H 0.165 0.835 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.261 0.739 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.022 0.978 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.149 0.851 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.637 10.027 8.979 22.186 hybrid contribution -1.051 -0.989 -0.068 1.445 sum 16.586 9.037 8.910 20.884 Atomic orbital electron populations 1.20714 0.91359 1.02026 1.01712 1.20085 0.96305 0.93047 1.00082 1.21126 0.95032 0.97189 1.01363 1.21421 0.93807 0.99227 0.99664 1.21203 1.00876 0.91208 1.00804 1.20181 0.91693 0.97544 1.01066 1.20774 0.99757 0.92840 1.03450 1.17486 0.90578 0.85519 1.03477 1.43321 1.38793 1.17452 1.32167 1.21025 0.79294 0.88504 0.80750 1.90685 1.66675 1.48189 1.35579 1.22134 0.95759 0.94485 0.97723 1.61902 1.14611 1.47874 1.00264 1.19585 0.89320 0.87104 0.96360 1.21408 1.03857 1.10385 1.19917 0.92945 1.25557 1.00458 0.95155 0.97263 1.69998 1.32274 1.15788 1.38511 0.85773 0.79547 0.77602 0.79697 1.20055 1.21025 1.20137 1.22026 0.96492 0.93823 0.93273 1.20205 0.97253 1.03521 0.89343 1.29404 0.92319 0.91339 0.94311 1.81158 1.12495 1.10833 1.12753 0.92324 0.92919 0.90848 0.84849 0.83623 0.83537 0.89242 0.91927 0.90526 0.73887 0.88878 0.86684 0.97806 0.96329 0.92850 0.91878 0.90134 0.85092 0.86598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.71 8.27 71.23 0.59 -2.12 16 2 C -0.09 -2.34 5.49 -19.74 -0.11 -2.45 16 3 C -0.13 -2.72 9.72 22.25 0.22 -2.51 16 4 C -0.12 -2.15 10.04 22.29 0.22 -1.93 16 5 C -0.12 -2.08 9.70 22.25 0.22 -1.87 16 6 C -0.10 -1.96 5.90 -19.74 -0.12 -2.08 16 7 C -0.11 -1.50 9.69 71.24 0.69 -0.81 16 8 C 0.12 2.83 5.80 38.15 0.22 3.05 16 9 N -0.67 -13.70 3.86 -303.50 -1.17 -14.87 16 10 C 0.52 13.99 5.72 87.66 0.50 14.49 16 11 O -0.54 -19.11 11.60 -3.04 -0.04 -19.15 16 12 C 0.03 0.78 5.27 85.56 0.45 1.23 16 13 N -0.52 -19.08 4.40 -905.33 -3.99 -23.06 16 14 C 0.20 8.85 4.56 85.56 0.39 9.24 16 15 C -0.52 -26.75 8.63 25.60 0.22 -26.53 16 16 H 0.05 2.79 7.33 -2.91 -0.02 2.77 16 17 C 0.01 0.76 5.46 84.65 0.46 1.22 16 18 N -0.92 -50.86 13.29 21.45 0.28 -50.58 16 19 Si 0.95 42.90 29.54 68.60 2.03 44.92 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 23 C 0.07 2.56 4.80 86.30 0.41 2.97 16 24 C -0.06 -1.73 5.02 28.79 0.14 -1.58 16 25 C 0.24 7.70 15.43 89.44 1.38 9.08 16 26 N -0.49 -17.86 18.54 20.01 0.37 -17.49 16 27 H 0.06 1.89 7.11 -2.39 -0.02 1.88 16 28 H 0.05 1.45 6.30 -2.39 -0.02 1.44 16 29 H 0.07 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.13 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 33 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 0.91 7.46 -2.39 -0.02 0.89 16 35 H 0.08 0.90 8.09 -2.38 -0.02 0.88 16 36 H 0.42 5.64 8.72 -92.71 -0.81 4.83 16 37 H 0.09 1.83 6.03 -2.39 -0.01 1.81 16 38 H 0.12 2.80 7.87 -2.39 -0.02 2.78 16 39 H 0.00 0.19 5.91 -2.39 -0.01 0.17 16 40 H 0.02 0.88 7.83 -2.39 -0.02 0.86 16 41 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.06 2.51 7.14 -2.39 -0.02 2.50 16 43 H 0.08 2.86 5.82 -2.38 -0.01 2.85 16 44 H 0.13 2.73 6.12 -2.39 -0.01 2.72 16 45 H 0.12 3.51 6.48 -2.39 -0.02 3.50 16 Total: -1.00 -68.46 368.99 3.60 -64.86 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.22 Total: 15.95 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 5.90 Total: -0.58 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -4.50 Total: -106.00 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.04 Total: -19.15 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -68.46 3.60 -64.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035982112.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.129 kcal (2) G-P(sol) polarization free energy of solvation -68.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds