Wall clock time and date at job start Tue Mar 31 2020 11:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34483 * 125.57337 * 2 1 4 4 C 1.46682 * 106.33228 * 179.86609 * 3 2 1 5 5 C 1.47268 * 126.94128 * 180.15357 * 4 3 2 6 6 O 1.21627 * 119.99965 * 232.29213 * 5 4 3 7 7 N 1.34781 * 120.00113 * 52.29199 * 5 4 3 8 8 C 1.46498 * 120.00197 * 175.38222 * 7 5 4 9 9 C 1.50698 * 109.47052 * 89.99918 * 8 7 5 10 10 H 1.07997 * 120.00028 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99566 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00127 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 119.99681 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47101 * 59.99984 * 13 11 9 15 15 H 1.48504 * 109.46984 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47117 * 300.00190 * 13 11 9 17 17 C 1.46507 * 119.99689 * 355.38395 * 7 5 4 18 18 C 1.52998 * 109.47435 * 93.18510 * 17 7 5 19 19 C 1.47191 * 109.46961 * 179.97438 * 18 17 7 20 20 N 5.45052 * 97.69562 * 63.21680 * 2 1 3 21 21 C 1.36767 * 106.11787 * 0.39106 * 4 3 2 22 22 C 1.50703 * 125.80474 * 179.78258 * 21 4 3 23 23 N 1.34658 * 108.39688 * 359.76598 * 21 4 3 24 24 C 1.46499 * 124.84997 * 180.02562 * 23 21 4 25 25 C 1.53006 * 117.49628 * 130.92391 * 24 23 21 26 26 C 1.52993 * 117.50115 * 62.26286 * 24 23 21 27 27 H 1.09006 * 109.47156 * 264.65411 * 1 2 3 28 28 H 1.08997 * 109.47088 * 24.66098 * 1 2 3 29 29 H 1.09008 * 109.46963 * 144.65566 * 1 2 3 30 30 H 1.08003 * 126.83115 * 359.97438 * 3 2 1 31 31 H 1.09001 * 109.46974 * 210.00118 * 8 7 5 32 32 H 1.09003 * 109.46881 * 329.99717 * 8 7 5 33 33 H 0.97000 * 119.99833 * 180.02562 * 12 11 9 34 34 H 1.09001 * 109.46452 * 213.18661 * 17 7 5 35 35 H 1.09005 * 109.46757 * 333.18002 * 17 7 5 36 36 H 1.09009 * 109.46948 * 299.99959 * 18 17 7 37 37 H 1.08999 * 109.46847 * 59.99488 * 18 17 7 38 38 H 1.09007 * 109.46944 * 269.98030 * 22 21 4 39 39 H 1.09004 * 109.46941 * 29.97661 * 22 21 4 40 40 H 1.08993 * 109.47372 * 149.97312 * 22 21 4 41 41 H 1.08997 * 115.54631 * 276.58531 * 24 23 21 42 42 H 1.08998 * 117.50141 * 359.97438 * 25 24 23 43 43 H 1.08997 * 117.49788 * 145.01755 * 25 24 23 44 44 H 1.08995 * 117.49989 * 214.97813 * 26 24 23 45 45 H 1.08998 * 117.49988 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0938 0.0000 4 6 3.6742 0.6105 0.0033 5 6 4.8978 1.4301 0.0077 6 8 5.7639 1.2343 -0.8235 7 7 5.0578 2.3972 0.9327 8 6 6.3160 3.1444 1.0012 9 6 6.2282 4.3586 0.1129 10 1 5.3253 4.5543 -0.4464 11 6 7.3002 5.2201 0.0150 12 7 8.3995 4.9820 0.6965 13 14 7.1917 6.7247 -1.0866 14 1 6.0751 7.5916 -0.6318 15 1 8.4671 7.4822 -1.0170 16 1 6.9467 6.2961 -2.4872 17 6 3.9733 2.7012 1.8697 18 6 4.1674 1.8928 3.1541 19 6 3.0781 2.1987 4.0956 20 7 2.2369 2.4340 4.8220 21 6 3.5997 -0.7552 -0.0040 22 6 4.7721 -1.7021 -0.0085 23 7 2.3007 -1.1099 -0.0059 24 6 1.8099 -2.4902 -0.0128 25 6 0.7354 -2.8629 1.0107 26 6 2.1681 -3.3733 1.1841 27 1 -0.3634 -0.0958 1.0232 28 1 -0.3633 0.9339 -0.4288 29 1 -0.3633 -0.8383 -0.5945 30 1 1.9629 2.1233 -0.0004 31 1 6.4965 3.4586 2.0292 32 1 7.1352 2.5079 0.6667 33 1 9.1536 5.5883 0.6279 34 1 3.9843 3.7654 2.1050 35 1 3.0173 2.4391 1.4163 36 1 4.1565 0.8285 2.9186 37 1 5.1234 2.1548 3.6073 38 1 5.0549 -1.9252 -1.0374 39 1 5.6139 -1.2405 0.5077 40 1 4.4956 -2.6252 0.5007 41 1 1.7589 -2.9661 -0.9920 42 1 0.3940 -2.0813 1.6894 43 1 -0.0223 -3.5844 0.7049 44 1 2.3524 -4.4303 0.9924 45 1 2.7693 -2.9275 1.9765 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070870850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:23 Heat of formation + Delta-G solvation = 67.162095 kcal Electronic energy + Delta-G solvation = -26614.081904 eV Core-core repulsion = 23019.678780 eV Total energy + Delta-G solvation = -3594.403123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.50165 -38.73946 -36.94033 -36.66108 -35.01686 -32.79639 -32.65174 -30.70721 -30.61125 -29.14325 -27.28235 -24.89558 -23.80514 -23.52929 -22.96000 -22.37769 -20.62514 -19.24111 -17.74643 -17.32751 -16.83316 -16.31466 -16.24333 -15.55040 -15.31526 -14.58979 -14.44235 -14.18929 -14.08867 -13.96323 -13.51416 -13.33768 -13.26775 -12.84414 -12.76123 -12.46855 -12.32958 -12.21214 -12.07864 -11.97730 -11.96770 -11.87373 -11.52736 -11.36186 -11.15430 -10.94749 -10.88978 -10.86731 -10.63584 -10.49803 -10.09167 -9.60268 -8.93830 -8.40010 -8.33126 -7.81916 -7.60506 -5.99156 -4.02740 2.17843 2.64035 2.69132 2.87926 2.94860 3.10850 3.37230 3.41156 3.45127 3.78813 3.94827 4.21043 4.29244 4.42563 4.43688 4.53018 4.78878 4.95977 5.11347 5.18580 5.25193 5.28365 5.33758 5.35804 5.40452 5.43324 5.48235 5.50199 5.59099 5.70738 5.71166 5.79006 5.79641 6.02784 6.06517 6.13679 6.31347 6.36390 6.97723 7.11498 7.27833 7.39975 7.48575 7.60694 7.71243 7.98151 8.29235 8.48371 8.97275 9.21109 9.62413 11.08853 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.014704 B = 0.003972 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.730223 B = 7047.224421 C = 7731.075019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.013 3.987 3 C -0.167 4.167 4 C -0.208 4.208 5 C 0.583 3.417 6 O -0.535 6.535 7 N -0.591 5.591 8 C 0.246 3.754 9 C -0.524 4.524 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.896 5.896 13 Si 0.896 3.104 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.113 3.887 18 C -0.047 4.047 19 C 0.222 3.778 20 N -0.453 5.453 21 C 0.082 3.918 22 C -0.085 4.085 23 N -0.418 5.418 24 C 0.050 3.950 25 C -0.169 4.169 26 C -0.171 4.171 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.145 0.855 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.263 0.737 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.836 -17.086 1.959 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.218 4.218 5 C 0.370 3.630 6 O -0.412 6.412 7 N -0.322 5.322 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.535 5.535 13 Si 0.723 3.277 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.013 4.013 18 C -0.089 4.089 19 C -0.096 4.096 20 N -0.130 5.130 21 C -0.032 4.032 22 C -0.143 4.143 23 N -0.096 5.096 24 C -0.053 4.053 25 C -0.206 4.206 26 C -0.209 4.209 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.146 0.854 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.128 0.872 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.535 -17.055 2.630 23.219 hybrid contribution 0.316 0.903 -0.894 1.309 sum -15.219 -16.152 1.736 22.260 Atomic orbital electron populations 1.20304 0.88315 1.03087 1.02004 1.20073 0.93218 0.85248 1.10895 1.21724 0.90765 0.97307 1.09351 1.20384 0.93690 0.92104 1.15591 1.17343 0.84930 0.79592 0.81092 1.90766 1.43937 1.69473 1.37021 1.48052 1.17133 1.35712 1.31288 1.19306 0.79831 0.90872 0.97254 1.21415 1.00411 1.07556 1.26885 0.92409 1.24903 0.95128 0.98151 0.95810 1.69912 1.04166 1.37815 1.41648 0.86598 0.77136 0.82565 0.81361 1.20294 1.21290 1.20193 1.21484 0.92428 0.99732 0.87675 1.19857 0.92970 1.03224 0.92842 1.29173 0.94053 0.92755 0.93581 1.81169 1.11439 1.09450 1.10973 1.20012 0.84266 0.93596 1.05308 1.20387 0.94045 0.96581 1.03263 1.42776 1.04816 1.04020 1.57946 1.21878 1.04736 0.82466 0.96224 1.23361 0.92578 1.03592 1.01094 1.23381 0.98478 0.99861 0.99165 0.91578 0.90357 0.91895 0.83699 0.94830 0.93770 0.92750 0.89549 0.89276 0.87783 0.86928 0.90568 0.89852 0.91846 0.85428 0.87703 0.87296 0.87239 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 8.89 36.01 0.32 -0.36 16 2 C 0.01 0.16 6.74 -81.86 -0.55 -0.39 16 3 C -0.17 -2.40 8.92 -37.50 -0.33 -2.74 16 4 C -0.21 -3.46 5.37 -103.35 -0.56 -4.02 16 5 C 0.58 12.13 7.14 -12.59 -0.09 12.04 16 6 O -0.53 -13.48 16.70 5.25 0.09 -13.39 16 7 N -0.59 -11.91 2.46 -176.38 -0.43 -12.34 16 8 C 0.25 6.11 5.14 -5.20 -0.03 6.08 16 9 C -0.52 -14.55 9.39 -34.44 -0.32 -14.87 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 13 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C 0.11 1.76 5.18 -4.04 -0.02 1.74 16 18 C -0.05 -0.60 6.03 -29.52 -0.18 -0.78 16 19 C 0.22 3.05 15.43 -20.76 -0.32 2.73 16 20 N -0.45 -7.17 18.54 42.16 0.78 -6.39 16 21 C 0.08 1.15 6.83 -81.88 -0.56 0.59 16 22 C -0.09 -1.05 9.83 36.01 0.35 -0.69 16 23 N -0.42 -4.86 2.98 -100.95 -0.30 -5.16 16 24 C 0.05 0.40 5.74 -67.93 -0.39 0.01 16 25 C -0.17 -1.02 9.25 -26.69 -0.25 -1.27 16 26 C -0.17 -1.09 9.02 -26.70 -0.24 -1.33 16 27 H 0.07 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.47 7.72 -51.92 -0.40 0.07 16 30 H 0.15 1.98 7.16 -52.48 -0.38 1.60 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.24 7.49 -51.93 -0.39 0.85 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.09 1.40 8.10 -51.93 -0.42 0.98 16 35 H 0.09 1.28 4.13 -51.93 -0.21 1.07 16 36 H 0.10 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.11 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 39 H 0.08 1.13 7.93 -51.93 -0.41 0.72 16 40 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 41 H 0.13 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 0.73 7.24 -51.93 -0.38 0.36 16 43 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.79 8.02 -51.93 -0.42 0.37 16 LS Contribution 382.20 15.07 5.76 5.76 Total: -1.00 -34.49 382.20 -8.31 -42.80 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.66 Total: -1.08 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.26 Total: -1.61 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.78 Total: -49.30 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: 0.09 Total: -13.39 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.49 -8.31 -42.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070870850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.963 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds