Wall clock time and date at job start Tue Mar 31 2020 11:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35317 * 126.12498 * 2 1 4 4 C 1.50703 * 126.04141 * 0.02562 * 3 2 1 5 5 N 1.46502 * 109.47002 * 79.99970 * 4 3 2 6 6 C 1.39663 * 119.99806 * 180.02562 * 5 4 3 7 7 C 1.38973 * 120.04649 * 0.02562 * 6 5 4 8 8 C 1.38116 * 120.03003 * 179.97438 * 7 6 5 9 9 C 1.38216 * 120.13578 * 359.74695 * 8 7 6 10 10 C 1.38779 * 120.08401 * 0.51068 * 9 8 7 11 11 O 1.35897 * 120.00949 * 179.76812 * 10 9 8 12 12 C 1.42898 * 117.00481 * 359.71829 * 11 10 9 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 C 1.38609 * 119.96517 * 359.48769 * 10 9 8 23 23 C 1.39875 * 107.92130 * 180.28314 * 3 2 1 24 24 N 1.30843 * 108.20215 * 359.55474 * 23 3 2 25 25 N 1.34948 * 126.12908 * 180.02562 * 2 1 3 26 26 C 1.46504 * 126.03848 * 359.96505 * 25 2 1 27 27 H 1.09003 * 109.47037 * 90.00342 * 1 2 3 28 28 H 1.09006 * 109.47199 * 209.99619 * 1 2 3 29 29 H 1.08998 * 109.47472 * 330.00022 * 1 2 3 30 30 H 1.09001 * 109.46841 * 320.00091 * 4 3 2 31 31 H 1.09000 * 109.46773 * 199.99735 * 4 3 2 32 32 H 0.97001 * 119.99801 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.98294 * 0.02562 * 7 6 5 34 34 H 1.08007 * 119.92769 * 180.02562 * 8 7 6 35 35 H 1.07991 * 119.95689 * 180.26971 * 9 8 7 36 36 H 1.09002 * 109.47259 * 300.00417 * 12 11 10 37 37 H 1.09001 * 109.47074 * 60.00439 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00307 * 13 12 11 39 39 H 1.08998 * 109.47533 * 59.99936 * 13 12 11 40 40 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 41 41 H 1.08006 * 120.06150 * 180.23058 * 22 10 9 42 42 H 1.07994 * 125.90343 * 179.74029 * 23 3 2 43 43 H 1.08998 * 109.47163 * 89.99605 * 26 25 2 44 44 H 1.08996 * 109.47027 * 209.99638 * 26 25 2 45 45 H 1.09003 * 109.46705 * 329.99274 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 7 1.4658 2.9186 1.3610 6 6 1.0027 4.2120 1.6128 7 6 0.8990 5.1286 0.5733 8 6 0.4404 6.4073 0.8225 9 6 0.0787 6.7773 2.1042 10 6 0.1853 5.8679 3.1470 11 8 -0.1663 6.2347 4.4074 12 6 -0.6314 7.5738 4.5875 13 6 -0.9764 7.8002 6.0608 14 6 -1.4675 9.2122 6.2506 15 1 -1.5280 9.8811 5.4049 16 6 -1.8406 9.6498 7.5037 17 7 -1.7675 8.8349 8.5335 18 14 -2.4487 11.4003 7.7392 19 1 -2.4360 12.1083 6.4339 20 1 -3.8335 11.3754 8.2748 21 1 -1.5606 12.1083 8.6956 22 6 0.6449 4.5835 2.9013 23 6 3.6334 0.6560 -0.0066 24 7 3.6335 -0.6524 -0.0007 25 7 2.3026 -1.0900 -0.0005 26 6 1.8540 -2.4846 -0.0004 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 0.9822 2.6325 -0.6597 31 1 2.6511 3.1693 -0.3510 32 1 1.5369 2.2790 2.0868 33 1 1.1762 4.8405 -0.4299 34 1 0.3601 7.1182 0.0134 35 1 -0.2835 7.7766 2.2950 36 1 0.1485 8.2730 4.2857 37 1 -1.5200 7.7350 3.9771 38 1 -1.7561 7.1010 6.3630 39 1 -0.0877 7.6391 6.6710 40 1 -2.0304 9.1427 9.4150 41 1 0.7249 3.8733 3.7111 42 1 4.5083 1.2892 -0.0122 43 1 1.7421 -2.8304 -1.0280 44 1 2.5902 -3.1031 0.5130 45 1 0.8958 -2.5579 0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093650051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:21 Heat of formation + Delta-G solvation = 55.452608 kcal Electronic energy + Delta-G solvation = -24412.953461 eV Core-core repulsion = 20818.042576 eV Total energy + Delta-G solvation = -3594.910885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.74293 -39.65519 -37.70936 -35.33902 -33.84552 -33.31582 -32.52927 -30.81193 -29.85099 -28.81953 -27.54903 -27.13413 -25.21556 -24.53227 -22.51115 -21.62453 -21.17844 -20.26966 -19.74398 -17.94608 -17.03381 -16.33594 -16.12149 -15.99373 -15.47970 -15.22766 -15.20922 -14.72026 -14.62449 -14.48721 -14.12646 -13.70681 -13.57412 -13.31106 -13.10616 -12.91243 -12.72245 -12.60390 -12.49309 -12.30130 -12.19972 -11.50102 -11.47832 -11.14532 -10.97425 -10.86777 -10.69159 -10.39157 -9.93889 -9.66858 -9.65705 -9.60064 -9.23940 -8.82488 -8.42075 -7.87270 -7.24324 -6.07148 -4.11273 1.41166 1.78770 1.94887 2.07559 2.27878 3.28895 3.35800 3.39662 3.54713 4.06662 4.10498 4.19371 4.20939 4.46013 4.57717 4.63205 4.72679 4.85025 4.95017 5.04152 5.06305 5.15826 5.29341 5.37567 5.42732 5.47443 5.54373 5.61748 5.68023 5.81770 5.85481 6.13032 6.14719 6.19797 6.23808 6.48426 6.57290 6.68265 6.73964 6.83067 6.96380 7.30108 7.47130 7.57184 7.69479 7.77170 7.88195 8.17387 8.29095 8.94768 9.52825 11.04531 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.001897 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.118156 B =14757.086043 C =15229.448735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.106 3.894 3 C -0.260 4.260 4 C 0.211 3.789 5 N -0.745 5.745 6 C 0.248 3.752 7 C -0.245 4.245 8 C -0.037 4.037 9 C -0.266 4.266 10 C 0.187 3.813 11 O -0.317 6.317 12 C 0.067 3.933 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.899 3.101 19 H -0.272 1.272 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.239 4.239 23 C 0.067 3.933 24 N -0.300 5.300 25 N -0.374 5.374 26 C 0.099 3.901 27 H 0.083 0.917 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.397 0.603 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.125 0.875 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.123 0.877 42 H 0.185 0.815 43 H 0.075 0.925 44 H 0.090 0.910 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 -20.447 -21.458 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.023 4.023 3 C -0.272 4.272 4 C 0.086 3.914 5 N -0.376 5.376 6 C 0.145 3.855 7 C -0.267 4.267 8 C -0.056 4.056 9 C -0.286 4.286 10 C 0.139 3.861 11 O -0.230 6.230 12 C -0.007 4.007 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.077 0.923 16 C -0.143 4.143 17 N -0.528 5.528 18 Si 0.726 3.274 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.263 4.263 23 C -0.119 4.119 24 N -0.120 5.120 25 N -0.156 5.156 26 C -0.042 4.042 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.046 0.954 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.202 0.798 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.047 -21.817 -21.280 31.281 hybrid contribution -0.748 1.515 0.392 1.734 sum 6.300 -20.303 -20.887 29.802 Atomic orbital electron populations 1.20550 0.87006 1.04422 1.03638 1.20985 0.94661 0.87031 0.99594 1.19811 0.92617 0.95080 1.19723 1.19341 0.98820 0.89065 0.84177 1.44758 1.73027 1.10626 1.09164 1.17364 0.91032 0.84649 0.92443 1.20378 1.13945 0.94577 0.97846 1.20613 0.94183 0.95025 0.95747 1.21133 1.13066 1.01003 0.93434 1.18824 0.90330 0.92451 0.84468 1.86142 1.78114 1.34111 1.24612 1.23298 0.97038 0.78235 1.02168 1.19133 0.97873 0.97180 0.87119 1.21027 1.44358 0.96620 0.94238 0.92279 1.24999 0.95544 0.97861 0.95885 1.69993 1.47674 1.35414 0.99752 0.86431 0.78450 0.84253 0.78262 1.19622 1.20883 1.20870 1.19660 1.14631 0.96176 0.95788 1.23829 0.97660 0.91967 0.98450 1.77430 0.96397 1.12983 1.25189 1.48480 1.04036 1.06068 1.57025 1.21872 1.01182 0.77733 1.03448 0.89886 0.90985 0.88940 0.92004 0.91638 0.76813 0.86655 0.86446 0.85690 0.93112 0.93117 0.95453 0.95434 0.92816 0.85935 0.79842 0.90637 0.89145 0.89403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 9.89 36.00 0.36 -0.16 16 2 C 0.11 0.84 6.93 -82.27 -0.57 0.27 16 3 C -0.26 -2.23 5.47 -105.05 -0.57 -2.81 16 4 C 0.21 1.77 4.91 -5.19 -0.03 1.74 16 5 N -0.74 -7.65 5.72 -59.82 -0.34 -7.99 16 6 C 0.25 3.27 6.65 -83.81 -0.56 2.71 16 7 C -0.24 -3.10 9.31 -39.35 -0.37 -3.47 16 8 C -0.04 -0.50 10.03 -39.63 -0.40 -0.90 16 9 C -0.27 -4.37 9.04 -39.39 -0.36 -4.72 16 10 C 0.19 3.41 6.68 -39.24 -0.26 3.15 16 11 O -0.32 -6.77 10.13 -19.42 -0.20 -6.97 16 12 C 0.07 1.47 4.68 37.16 0.17 1.65 16 13 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 14 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 18 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 C -0.24 -3.79 9.83 -39.24 -0.39 -4.17 16 23 C 0.07 0.62 11.96 -17.36 -0.21 0.41 16 24 N -0.30 -3.14 12.58 30.63 0.39 -2.76 16 25 N -0.37 -3.13 4.01 -63.88 -0.26 -3.38 16 26 C 0.10 0.43 11.27 59.85 0.67 1.11 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.28 7.08 -51.93 -0.37 -0.09 16 29 H 0.09 0.57 7.88 -51.93 -0.41 0.16 16 30 H 0.06 0.49 7.93 -51.93 -0.41 0.08 16 31 H 0.07 0.53 7.95 -51.93 -0.41 0.12 16 32 H 0.40 3.97 8.47 -40.82 -0.35 3.62 16 33 H 0.12 1.19 6.73 -52.49 -0.35 0.84 16 34 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.13 2.04 6.29 -52.49 -0.33 1.71 16 36 H 0.05 1.07 7.67 -51.93 -0.40 0.67 16 37 H 0.05 1.07 7.65 -51.93 -0.40 0.67 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 41 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 42 H 0.18 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.20 7.05 -51.93 -0.37 -0.16 16 LS Contribution 378.80 15.07 5.71 5.71 Total: -1.00 -33.50 378.80 -8.76 -42.26 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.72 Total: 0.91 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -3.06 Total: -18.22 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.52 Total: -40.13 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.20 Total: -6.97 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.50 -8.76 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093650051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.714 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds