Wall clock time and date at job start Tue Mar 31 2020 11:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35317 * 126.12498 * 2 1 4 4 C 1.50703 * 126.04141 * 0.02562 * 3 2 1 5 5 N 1.46502 * 109.47002 * 79.99970 * 4 3 2 6 6 C 1.39663 * 119.99806 * 180.02562 * 5 4 3 7 7 C 1.38973 * 120.04649 * 0.02562 * 6 5 4 8 8 C 1.38116 * 120.03003 * 179.97438 * 7 6 5 9 9 C 1.38216 * 120.13578 * 359.74695 * 8 7 6 10 10 C 1.38779 * 120.08401 * 0.51068 * 9 8 7 11 11 O 1.35897 * 120.00949 * 179.76812 * 10 9 8 12 12 C 1.42898 * 117.00481 * 359.71829 * 11 10 9 13 13 C 1.52997 * 109.47319 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46616 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47104 * 119.99966 * 18 16 14 21 21 H 1.48489 * 109.47200 * 240.00246 * 18 16 14 22 22 C 1.38609 * 119.96517 * 359.48769 * 10 9 8 23 23 C 1.39875 * 107.92130 * 180.28314 * 3 2 1 24 24 N 1.30843 * 108.20215 * 359.55474 * 23 3 2 25 25 N 1.34948 * 126.12908 * 180.02562 * 2 1 3 26 26 C 1.46504 * 126.03848 * 359.96505 * 25 2 1 27 27 H 1.09003 * 109.47037 * 90.00342 * 1 2 3 28 28 H 1.09006 * 109.47199 * 209.99619 * 1 2 3 29 29 H 1.08998 * 109.47472 * 330.00022 * 1 2 3 30 30 H 1.09001 * 109.46841 * 320.00091 * 4 3 2 31 31 H 1.09000 * 109.46773 * 199.99735 * 4 3 2 32 32 H 0.97001 * 119.99801 * 359.97438 * 5 4 3 33 33 H 1.07996 * 119.98294 * 0.02562 * 7 6 5 34 34 H 1.08007 * 119.92769 * 180.02562 * 8 7 6 35 35 H 1.07991 * 119.95689 * 180.26971 * 9 8 7 36 36 H 1.09002 * 109.47259 * 300.00417 * 12 11 10 37 37 H 1.09001 * 109.47074 * 60.00439 * 12 11 10 38 38 H 1.09002 * 109.47153 * 300.00307 * 13 12 11 39 39 H 1.08998 * 109.47533 * 59.99936 * 13 12 11 40 40 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 41 41 H 1.08006 * 120.06150 * 180.23058 * 22 10 9 42 42 H 1.07994 * 125.90343 * 179.74029 * 23 3 2 43 43 H 1.08998 * 109.47163 * 89.99605 * 26 25 2 44 44 H 1.08996 * 109.47027 * 209.99638 * 26 25 2 45 45 H 1.09003 * 109.46705 * 329.99274 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 0.0005 5 7 1.4658 2.9186 1.3610 6 6 1.0027 4.2120 1.6128 7 6 0.8990 5.1286 0.5733 8 6 0.4404 6.4073 0.8225 9 6 0.0787 6.7773 2.1042 10 6 0.1853 5.8679 3.1470 11 8 -0.1663 6.2347 4.4074 12 6 -0.6314 7.5738 4.5875 13 6 -0.9764 7.8002 6.0608 14 6 -1.4675 9.2122 6.2506 15 1 -1.5280 9.8811 5.4049 16 6 -1.8406 9.6498 7.5037 17 7 -1.7675 8.8349 8.5335 18 14 -2.4487 11.4003 7.7392 19 1 -2.4360 12.1083 6.4339 20 1 -3.8335 11.3754 8.2748 21 1 -1.5606 12.1083 8.6956 22 6 0.6449 4.5835 2.9013 23 6 3.6334 0.6560 -0.0066 24 7 3.6335 -0.6524 -0.0007 25 7 2.3026 -1.0900 -0.0005 26 6 1.8540 -2.4846 -0.0004 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8901 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 0.9822 2.6325 -0.6597 31 1 2.6511 3.1693 -0.3510 32 1 1.5369 2.2790 2.0868 33 1 1.1762 4.8405 -0.4299 34 1 0.3601 7.1182 0.0134 35 1 -0.2835 7.7766 2.2950 36 1 0.1485 8.2730 4.2857 37 1 -1.5200 7.7350 3.9771 38 1 -1.7561 7.1010 6.3630 39 1 -0.0877 7.6391 6.6710 40 1 -2.0304 9.1427 9.4150 41 1 0.7249 3.8733 3.7111 42 1 4.5083 1.2892 -0.0122 43 1 1.7421 -2.8304 -1.0280 44 1 2.5902 -3.1031 0.5130 45 1 0.8958 -2.5579 0.5140 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093650051.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:20 Heat of formation + Delta-G solvation = 34.931946 kcal Electronic energy + Delta-G solvation = -24413.843303 eV Core-core repulsion = 20818.042576 eV Total energy + Delta-G solvation = -3595.800728 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34291 -40.94218 -38.98399 -36.33194 -35.39978 -34.39792 -33.21536 -32.53008 -31.05176 -29.95543 -28.37220 -27.60473 -26.96350 -25.49876 -23.81751 -23.09774 -21.86363 -21.68488 -20.37093 -19.30177 -18.31623 -17.67538 -17.05949 -16.87270 -16.75565 -16.64149 -16.46671 -16.32369 -15.36204 -15.31202 -15.14132 -14.47341 -14.32911 -14.30592 -14.08954 -14.05012 -13.90514 -13.58720 -13.38112 -13.17827 -13.11052 -12.99299 -12.79754 -12.60289 -12.49349 -12.36831 -11.92469 -11.69115 -11.53134 -11.51350 -11.34223 -10.77255 -10.61365 -10.25750 -9.44336 -9.15382 -8.25524 -8.25466 -6.38968 0.64232 0.77158 0.82507 1.41979 1.43183 1.56402 1.57144 1.62738 2.28803 2.49851 2.94924 3.03846 3.08863 3.57794 3.73076 4.05690 4.10853 4.19295 4.30471 4.31803 4.34232 4.37060 4.41386 4.42399 4.46102 4.59372 4.63431 4.70417 4.73843 4.78221 4.80389 4.98570 5.04646 5.08909 5.22340 5.33178 5.39593 5.49110 5.58900 5.62836 5.69050 5.72829 5.82981 6.07010 6.09267 6.50578 6.67245 6.68430 6.76282 6.86342 7.31049 8.87987 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.028678 B = 0.001897 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.118156 B =14757.086043 C =15229.448735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.107 3.893 3 C -0.275 4.275 4 C 0.213 3.787 5 N -0.735 5.735 6 C 0.257 3.743 7 C -0.235 4.235 8 C -0.031 4.031 9 C -0.284 4.284 10 C 0.151 3.849 11 O -0.344 6.344 12 C 0.087 3.913 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.071 0.929 16 C 0.000 4.000 17 N -0.932 5.932 18 Si 0.978 3.022 19 H -0.257 1.257 20 H -0.276 1.276 21 H -0.277 1.277 22 C -0.255 4.255 23 C 0.059 3.941 24 N -0.338 5.338 25 N -0.379 5.379 26 C 0.089 3.911 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.398 0.602 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.120 0.880 36 H 0.058 0.942 37 H 0.059 0.941 38 H -0.002 1.002 39 H -0.003 1.003 40 H 0.267 0.733 41 H 0.117 0.883 42 H 0.198 0.802 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.974 -20.285 -24.163 32.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.023 4.023 3 C -0.286 4.286 4 C 0.090 3.910 5 N -0.363 5.363 6 C 0.152 3.848 7 C -0.257 4.257 8 C -0.050 4.050 9 C -0.305 4.305 10 C 0.105 3.895 11 O -0.258 6.258 12 C 0.013 3.987 13 C -0.010 4.010 14 C -0.582 4.582 15 H 0.089 0.911 16 C -0.199 4.199 17 N -0.571 5.571 18 Si 0.801 3.199 19 H -0.181 1.181 20 H -0.202 1.202 21 H -0.202 1.202 22 C -0.278 4.278 23 C -0.127 4.127 24 N -0.159 5.159 25 N -0.161 5.161 26 C -0.051 4.051 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.233 0.767 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.075 0.925 41 H 0.135 0.865 42 H 0.214 0.786 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.692 -21.707 -24.023 33.062 hybrid contribution -0.564 1.233 1.123 1.760 sum 6.128 -20.475 -22.900 31.324 Atomic orbital electron populations 1.20621 0.85124 1.04873 1.04709 1.21422 0.95801 0.86820 0.98243 1.19865 0.92524 0.95367 1.20879 1.19447 0.99525 0.89160 0.82903 1.44891 1.71693 1.09458 1.10288 1.17407 0.90020 0.85865 0.91504 1.20759 1.12142 0.93827 0.98986 1.20965 0.92730 0.96061 0.95234 1.21205 1.14365 1.00569 0.94335 1.19156 0.92773 0.94005 0.83609 1.86049 1.79291 1.33278 1.27191 1.22821 0.97691 0.79385 0.98837 1.18980 0.95530 0.96488 0.89995 1.21437 1.44487 0.97298 0.94991 0.91082 1.26068 0.95460 1.02907 0.95425 1.70137 1.48597 1.37935 1.00438 0.85210 0.77849 0.78073 0.78760 1.18079 1.20194 1.20249 1.19757 1.15520 0.95439 0.97116 1.24155 0.98607 0.91928 0.98011 1.77367 0.98059 1.13758 1.26696 1.48796 1.03461 1.07414 1.56407 1.22186 1.02157 0.76035 1.04713 0.88388 0.89377 0.89645 0.90722 0.90804 0.76699 0.83394 0.83302 0.86250 0.92352 0.92229 0.98359 0.98436 0.92471 0.86457 0.78568 0.89290 0.89198 0.87141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.89 71.23 0.70 -0.05 16 2 C 0.11 1.48 6.93 41.40 0.29 1.76 16 3 C -0.27 -4.20 5.47 -20.14 -0.11 -4.31 16 4 C 0.21 2.98 4.91 85.63 0.42 3.40 16 5 N -0.73 -13.60 5.72 -343.18 -1.96 -15.56 16 6 C 0.26 6.33 6.65 38.20 0.25 6.59 16 7 C -0.23 -5.18 9.31 22.42 0.21 -4.97 16 8 C -0.03 -0.77 10.03 22.24 0.22 -0.55 16 9 C -0.28 -9.19 9.04 22.39 0.20 -8.99 16 10 C 0.15 5.63 6.68 22.49 0.15 5.78 16 11 O -0.34 -15.45 10.13 -92.39 -0.94 -16.38 16 12 C 0.09 3.99 4.68 71.98 0.34 4.33 16 13 C 0.03 1.54 5.34 29.85 0.16 1.70 16 14 C -0.54 -31.37 9.11 25.60 0.23 -31.13 16 15 H 0.07 3.83 7.74 -2.91 -0.02 3.81 16 16 C 0.00 -0.02 5.46 84.65 0.46 0.45 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.21 16 18 Si 0.98 44.07 29.54 68.60 2.03 46.10 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 22 C -0.25 -8.13 9.83 22.49 0.22 -7.91 16 23 C 0.06 1.01 11.96 85.24 1.02 2.03 16 24 N -0.34 -6.85 12.58 -57.02 -0.72 -7.57 16 25 N -0.38 -5.78 4.01 -356.03 -1.43 -7.21 16 26 C 0.09 0.62 11.27 127.77 1.44 2.06 16 27 H 0.10 0.51 8.14 -2.39 -0.02 0.50 16 28 H 0.09 0.42 7.08 -2.38 -0.02 0.40 16 29 H 0.08 0.84 7.88 -2.39 -0.02 0.82 16 30 H 0.07 0.90 7.93 -2.39 -0.02 0.88 16 31 H 0.07 0.95 7.95 -2.39 -0.02 0.93 16 32 H 0.40 7.44 8.47 -92.71 -0.79 6.66 16 33 H 0.15 2.32 6.73 -2.91 -0.02 2.30 16 34 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.12 3.89 6.29 -2.91 -0.02 3.88 16 36 H 0.06 2.54 7.67 -2.39 -0.02 2.52 16 37 H 0.06 2.58 7.65 -2.39 -0.02 2.56 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 41 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 42 H 0.20 2.52 8.06 -2.91 -0.02 2.49 16 43 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.11 0.24 7.05 -2.39 -0.02 0.22 16 Total: -1.00 -74.88 378.80 3.69 -71.19 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.21 Total: 16.46 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 6.21 Total: -29.81 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -3.83 Total: -87.55 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.94 Total: -16.38 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -74.88 3.69 -71.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093650051.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.121 kcal (2) G-P(sol) polarization free energy of solvation -74.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds