Wall clock time and date at job start Tue Mar 31 2020 10:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.96460 * 2 1 4 4 C 1.38260 * 120.15108 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07782 * 359.73862 * 4 3 2 6 6 C 1.50693 * 120.04348 * 180.27437 * 5 4 3 7 7 C 1.38897 * 119.91915 * 0.53253 * 5 4 3 8 8 N 1.39673 * 120.07050 * 179.74478 * 7 5 4 9 9 C 1.46506 * 119.99605 * 179.72648 * 8 7 5 10 10 C 1.50699 * 109.46928 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00169 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47101 * 90.00231 * 13 12 10 15 15 H 1.07998 * 119.99673 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99805 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99658 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00340 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47095 * 90.00111 * 18 16 14 20 20 H 1.48500 * 109.47502 * 210.00291 * 18 16 14 21 21 H 1.48501 * 109.46981 * 330.00567 * 18 16 14 22 22 C 1.46499 * 119.99707 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.47268 * 89.99931 * 22 12 10 24 24 C 1.47195 * 109.47366 * 179.97438 * 23 22 12 25 25 N 7.33919 * 74.83621 * 191.74957 * 2 1 3 26 26 C 1.38086 * 119.96346 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46991 * 269.98110 * 1 2 3 28 28 H 1.08998 * 109.46656 * 29.98204 * 1 2 3 29 29 H 1.08995 * 109.46745 * 149.97868 * 1 2 3 30 30 H 1.08005 * 119.92374 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.96083 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47474 * 270.26180 * 6 5 4 33 33 H 1.09010 * 109.46639 * 30.26031 * 6 5 4 34 34 H 1.08998 * 109.47532 * 150.25561 * 6 5 4 35 35 H 0.96999 * 120.00315 * 359.72374 * 8 7 5 36 36 H 1.09004 * 109.47073 * 299.99891 * 9 8 7 37 37 H 1.09000 * 109.47212 * 59.99974 * 9 8 7 38 38 H 1.08998 * 109.47257 * 210.00712 * 13 12 10 39 39 H 1.09005 * 109.47039 * 330.00407 * 13 12 10 40 40 H 0.97002 * 119.99773 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46865 * 209.99250 * 22 12 10 42 42 H 1.08998 * 109.47138 * 329.99800 * 22 12 10 43 43 H 1.09007 * 109.46973 * 300.00153 * 23 22 12 44 44 H 1.08998 * 109.47148 * 59.99875 * 23 22 12 45 45 H 1.07995 * 120.03372 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2766 0.0097 0.0044 6 6 5.7835 0.0155 0.0100 7 6 3.5860 -1.1954 -0.0013 8 7 4.2868 -2.4036 -0.0018 9 6 3.5567 -3.6738 -0.0017 10 6 4.5382 -4.8173 -0.0016 11 8 5.7302 -4.5934 -0.0020 12 7 4.0915 -6.0889 -0.0010 13 6 5.0456 -7.2006 -0.0015 14 6 5.3738 -7.5815 1.4192 15 1 4.9169 -7.0490 2.2402 16 6 6.2572 -8.6097 1.6706 17 7 6.5431 -8.9424 2.9105 18 14 7.0469 -9.5311 0.2505 19 1 8.3182 -8.8630 -0.1271 20 1 7.3262 -10.9302 0.6623 21 1 6.1239 -9.5324 -0.9129 22 6 2.6516 -6.3594 -0.0011 23 6 2.1506 -6.4542 -1.4436 24 6 0.7040 -6.7266 -1.4437 25 7 -0.4127 -6.9352 -1.4425 26 6 2.1967 -1.1963 -0.0005 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3632 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6560 2.1325 0.0004 31 1 4.1167 2.1401 -0.0001 32 1 6.1507 0.0197 -1.0162 33 1 6.1414 0.9057 0.5276 34 1 6.1484 -0.8743 0.5230 35 1 5.2568 -2.4017 -0.0021 36 1 2.9304 -3.7329 0.8885 37 1 2.9298 -3.7326 -0.8915 38 1 4.6066 -8.0560 -0.5149 39 1 5.9573 -6.8967 -0.5160 40 1 7.1644 -9.6661 3.0874 41 1 2.4588 -7.3010 0.5131 42 1 2.1302 -5.5515 0.5123 43 1 2.3434 -5.5126 -1.9579 44 1 2.6720 -7.2620 -1.9570 45 1 1.6567 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096969048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:37 Heat of formation + Delta-G solvation = 13.775886 kcal Electronic energy + Delta-G solvation = -25614.259723 eV Core-core repulsion = 22017.541600 eV Total energy + Delta-G solvation = -3596.718123 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.06823 -39.29427 -37.04343 -35.79090 -35.25765 -33.58609 -32.86099 -31.14705 -30.11285 -29.27903 -28.40636 -26.48563 -24.73034 -24.18113 -22.75388 -21.49548 -20.79216 -18.78326 -17.88644 -17.27429 -16.90483 -16.59548 -15.90916 -15.49795 -15.38605 -15.19353 -14.78369 -14.42007 -14.12904 -13.93055 -13.84775 -13.68238 -13.35944 -13.13834 -12.82462 -12.79963 -12.67910 -12.58410 -12.49771 -12.31253 -11.99139 -11.95587 -11.69721 -11.61526 -11.21960 -11.16057 -11.00945 -10.92099 -10.64358 -10.30635 -10.02861 -9.69303 -9.38132 -8.69474 -8.57214 -8.08859 -7.33006 -6.18735 -4.19383 1.39478 1.64429 2.59708 2.70448 2.96777 3.14192 3.21762 3.26646 3.30553 3.63154 3.82752 4.03738 4.29522 4.68817 4.77221 4.82529 4.85670 4.94545 5.05422 5.13666 5.15144 5.16600 5.25337 5.31745 5.41447 5.49780 5.50629 5.62949 5.63396 5.65020 5.72898 5.78624 5.90956 5.94368 6.18636 6.34758 6.44202 6.54340 6.68277 6.73917 6.88464 7.02396 7.33457 7.45919 7.47214 7.76717 7.92265 8.31826 8.58749 8.84333 9.39927 10.94356 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.003589 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.840217 B = 7800.699971 C = 9524.674695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.045 4.045 3 C -0.182 4.182 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.107 4.107 7 C 0.228 3.772 8 N -0.731 5.731 9 C 0.102 3.898 10 C 0.506 3.494 11 O -0.528 6.528 12 N -0.586 5.586 13 C 0.215 3.785 14 C -0.535 4.535 15 H 0.076 0.924 16 C 0.074 3.926 17 N -0.894 5.894 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.265 1.265 22 C 0.114 3.886 23 C -0.051 4.051 24 C 0.215 3.785 25 N -0.439 5.439 26 C -0.200 4.200 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.412 0.588 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.035 0.965 39 H 0.040 0.960 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.117 0.883 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 15.842 -8.738 20.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.203 4.203 4 C -0.089 4.089 5 C -0.172 4.172 6 C -0.164 4.164 7 C 0.124 3.876 8 N -0.365 5.365 9 C -0.026 4.026 10 C 0.292 3.708 11 O -0.404 6.404 12 N -0.318 5.318 13 C 0.095 3.905 14 C -0.573 4.573 15 H 0.094 0.906 16 C -0.129 4.129 17 N -0.531 5.531 18 Si 0.702 3.298 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.190 1.190 22 C -0.012 4.012 23 C -0.093 4.093 24 C -0.104 4.104 25 N -0.116 5.116 26 C -0.223 4.223 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.136 0.864 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.252 0.748 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.125 0.875 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.885 15.290 -8.617 20.143 hybrid contribution 1.205 -0.631 -0.512 1.453 sum -8.680 14.660 -9.129 19.329 Atomic orbital electron populations 1.20788 0.91590 1.02495 1.02208 1.19599 0.95465 0.92676 0.96838 1.20694 0.93986 0.97078 1.08495 1.20719 0.93921 0.96578 0.97651 1.19352 0.95828 0.91644 1.10334 1.20606 0.91382 1.02519 1.01925 1.17594 0.91108 0.85383 0.93549 1.44539 1.09318 1.01202 1.81417 1.21190 0.94686 0.83855 1.02910 1.20238 0.89331 0.83944 0.77300 1.90685 1.16675 1.83674 1.49377 1.47827 1.06041 1.06354 1.71542 1.19772 0.88521 0.83469 0.98744 1.21276 1.27243 1.17693 0.91107 0.90620 1.24856 0.95795 0.96670 0.95565 1.69890 1.34881 1.29660 1.18717 0.86870 0.80643 0.79439 0.82817 1.19885 1.21041 1.18966 1.21403 0.81873 1.04662 0.93301 1.19878 0.82574 1.05489 1.01310 1.29000 0.94908 0.93125 0.93335 1.81234 1.12892 1.09151 1.08350 1.20474 0.91854 0.98098 1.11867 0.91236 0.91723 0.91707 0.86802 0.86416 0.91713 0.91697 0.91826 0.74773 0.89474 0.89764 0.94736 0.94168 0.92420 0.88124 0.90142 0.87456 0.86544 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 2 C -0.05 -0.48 5.88 -104.65 -0.62 -1.10 16 3 C -0.18 -1.91 9.70 -39.55 -0.38 -2.30 16 4 C -0.07 -0.75 9.70 -39.61 -0.38 -1.14 16 5 C -0.17 -2.01 5.90 -104.42 -0.62 -2.62 16 6 C -0.11 -1.14 9.57 36.00 0.34 -0.80 16 7 C 0.23 2.91 6.63 -83.79 -0.56 2.35 16 8 N -0.73 -9.81 5.60 -59.80 -0.34 -10.15 16 9 C 0.10 1.27 3.95 -5.19 -0.02 1.25 16 10 C 0.51 8.50 7.74 -10.99 -0.09 8.42 16 11 O -0.53 -11.14 15.25 5.56 0.08 -11.05 16 12 N -0.59 -9.68 2.46 -175.06 -0.43 -10.11 16 13 C 0.21 4.52 4.23 -5.19 -0.02 4.50 16 14 C -0.53 -14.07 9.94 -34.44 -0.34 -14.41 16 15 H 0.08 2.21 8.06 -52.49 -0.42 1.78 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 18 Si 0.88 20.13 27.47 -169.99 -4.67 15.46 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 22 C 0.11 1.34 5.17 -4.04 -0.02 1.32 16 23 C -0.05 -0.45 6.03 -29.52 -0.18 -0.63 16 24 C 0.21 2.33 15.43 -20.76 -0.32 2.01 16 25 N -0.44 -6.01 18.54 42.16 0.78 -5.23 16 26 C -0.20 -2.33 8.96 -39.38 -0.35 -2.69 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.11 0.97 8.06 -52.48 -0.42 0.55 16 31 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 34 H 0.06 0.74 6.55 -51.93 -0.34 0.40 16 35 H 0.41 6.02 5.44 -40.82 -0.22 5.80 16 36 H 0.09 1.00 7.21 -51.93 -0.37 0.63 16 37 H 0.08 0.81 7.00 -51.93 -0.36 0.45 16 38 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 39 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 42 H 0.08 0.78 6.44 -51.93 -0.33 0.44 16 43 H 0.11 0.73 7.22 -51.93 -0.38 0.36 16 44 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.12 1.23 6.74 -52.49 -0.35 0.87 16 LS Contribution 378.13 15.07 5.70 5.70 Total: -1.00 -33.12 378.13 -7.86 -40.98 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.47 Total: 4.46 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -3.29 Total: -4.48 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.79 Total: -51.07 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.67 Total: 15.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.12 -7.86 -40.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.752 kcal (2) G-P(sol) polarization free energy of solvation -33.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds