Wall clock time and date at job start Tue Mar 31 2020 10:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38308 * 119.96460 * 2 1 4 4 C 1.38260 * 120.15108 * 180.02562 * 3 2 1 5 5 C 1.38126 * 120.07782 * 359.73862 * 4 3 2 6 6 C 1.50693 * 120.04348 * 180.27437 * 5 4 3 7 7 C 1.38897 * 119.91915 * 0.53253 * 5 4 3 8 8 N 1.39673 * 120.07050 * 179.74478 * 7 5 4 9 9 C 1.46506 * 119.99605 * 179.72648 * 8 7 5 10 10 C 1.50699 * 109.46928 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00041 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00037 * 179.97438 * 10 9 8 13 13 C 1.46500 * 120.00169 * 179.97438 * 12 10 9 14 14 C 1.50700 * 109.47101 * 90.00231 * 13 12 10 15 15 H 1.07998 * 119.99673 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99805 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99658 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00340 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47095 * 90.00111 * 18 16 14 20 20 H 1.48500 * 109.47502 * 210.00291 * 18 16 14 21 21 H 1.48501 * 109.46981 * 330.00567 * 18 16 14 22 22 C 1.46499 * 119.99707 * 0.02562 * 12 10 9 23 23 C 1.53000 * 109.47268 * 89.99931 * 22 12 10 24 24 C 1.47195 * 109.47366 * 179.97438 * 23 22 12 25 25 N 7.33919 * 74.83621 * 191.74957 * 2 1 3 26 26 C 1.38086 * 119.96346 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.46991 * 269.98110 * 1 2 3 28 28 H 1.08998 * 109.46656 * 29.98204 * 1 2 3 29 29 H 1.08995 * 109.46745 * 149.97868 * 1 2 3 30 30 H 1.08005 * 119.92374 * 0.02562 * 3 2 1 31 31 H 1.07999 * 119.96083 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.47474 * 270.26180 * 6 5 4 33 33 H 1.09010 * 109.46639 * 30.26031 * 6 5 4 34 34 H 1.08998 * 109.47532 * 150.25561 * 6 5 4 35 35 H 0.96999 * 120.00315 * 359.72374 * 8 7 5 36 36 H 1.09004 * 109.47073 * 299.99891 * 9 8 7 37 37 H 1.09000 * 109.47212 * 59.99974 * 9 8 7 38 38 H 1.08998 * 109.47257 * 210.00712 * 13 12 10 39 39 H 1.09005 * 109.47039 * 330.00407 * 13 12 10 40 40 H 0.97002 * 119.99773 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46865 * 209.99250 * 22 12 10 42 42 H 1.08998 * 109.47138 * 329.99800 * 22 12 10 43 43 H 1.09007 * 109.46973 * 300.00153 * 23 22 12 44 44 H 1.08998 * 109.47148 * 59.99875 * 23 22 12 45 45 H 1.07995 * 120.03372 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2027 -0.0005 5 6 4.2766 0.0097 0.0044 6 6 5.7835 0.0155 0.0100 7 6 3.5860 -1.1954 -0.0013 8 7 4.2868 -2.4036 -0.0018 9 6 3.5567 -3.6738 -0.0017 10 6 4.5382 -4.8173 -0.0016 11 8 5.7302 -4.5934 -0.0020 12 7 4.0915 -6.0889 -0.0010 13 6 5.0456 -7.2006 -0.0015 14 6 5.3738 -7.5815 1.4192 15 1 4.9169 -7.0490 2.2402 16 6 6.2572 -8.6097 1.6706 17 7 6.5431 -8.9424 2.9105 18 14 7.0469 -9.5311 0.2505 19 1 8.3182 -8.8630 -0.1271 20 1 7.3262 -10.9302 0.6623 21 1 6.1239 -9.5324 -0.9129 22 6 2.6516 -6.3594 -0.0011 23 6 2.1506 -6.4542 -1.4436 24 6 0.7040 -6.7266 -1.4437 25 7 -0.4127 -6.9352 -1.4425 26 6 2.1967 -1.1963 -0.0005 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3632 0.8901 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6560 2.1325 0.0004 31 1 4.1167 2.1401 -0.0001 32 1 6.1507 0.0197 -1.0162 33 1 6.1414 0.9057 0.5276 34 1 6.1484 -0.8743 0.5230 35 1 5.2568 -2.4017 -0.0021 36 1 2.9304 -3.7329 0.8885 37 1 2.9298 -3.7326 -0.8915 38 1 4.6066 -8.0560 -0.5149 39 1 5.9573 -6.8967 -0.5160 40 1 7.1644 -9.6661 3.0874 41 1 2.4588 -7.3010 0.5131 42 1 2.1302 -5.5515 0.5123 43 1 2.3434 -5.5126 -1.9579 44 1 2.6720 -7.2620 -1.9570 45 1 1.6567 -2.1315 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096969048.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:35 Heat of formation + Delta-G solvation = -6.366293 kcal Electronic energy + Delta-G solvation = -25615.133153 eV Core-core repulsion = 22017.541600 eV Total energy + Delta-G solvation = -3597.591554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.18364 -40.32197 -38.05290 -36.91641 -36.33759 -34.83948 -34.35149 -32.38529 -31.13953 -30.06420 -29.77475 -27.67414 -25.51477 -25.27163 -24.27667 -22.54110 -21.64212 -20.02709 -19.19790 -18.57865 -18.25097 -17.72540 -16.86959 -16.71502 -16.52695 -16.11377 -15.91131 -15.73097 -15.12132 -15.09837 -14.75827 -14.57606 -14.48583 -14.21311 -14.01831 -13.89716 -13.74926 -13.57999 -13.55164 -13.36796 -13.26029 -13.01400 -12.69732 -12.67538 -12.46212 -12.39532 -12.01136 -11.98772 -11.89981 -11.70965 -11.69764 -10.89847 -10.79958 -10.77410 -9.54240 -9.38558 -8.28726 -8.23254 -6.33931 0.57084 0.80005 1.38628 1.42655 1.49791 1.60701 1.73714 1.86641 2.06623 2.35831 2.62206 2.99768 3.05411 3.12287 3.60932 3.98982 4.00149 4.05961 4.07995 4.26671 4.30235 4.35845 4.42560 4.54164 4.60140 4.73602 4.80169 4.82186 4.85078 4.86492 4.91851 4.94475 4.97852 5.06525 5.09401 5.21665 5.40130 5.50243 5.52937 5.55996 5.71855 5.87870 6.06934 6.26002 6.40401 6.59040 6.64511 6.69898 6.79384 7.20775 7.34262 8.88128 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.003589 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.840217 B = 7800.699971 C = 9524.674695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.053 4.053 3 C -0.187 4.187 4 C -0.076 4.076 5 C -0.186 4.186 6 C -0.104 4.104 7 C 0.209 3.791 8 N -0.743 5.743 9 C 0.113 3.887 10 C 0.501 3.499 11 O -0.579 6.579 12 N -0.587 5.587 13 C 0.222 3.778 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.009 3.991 17 N -0.949 5.949 18 Si 0.944 3.056 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.225 1.225 22 C 0.107 3.893 23 C -0.038 4.038 24 C 0.244 3.756 25 N -0.489 5.489 26 C -0.210 4.210 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.136 0.864 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.047 0.953 35 H 0.403 0.597 36 H 0.100 0.900 37 H 0.122 0.878 38 H 0.064 0.936 39 H 0.027 0.973 40 H 0.266 0.734 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.138 0.862 44 H 0.130 0.870 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.557 16.782 -11.165 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.207 4.207 4 C -0.094 4.094 5 C -0.190 4.190 6 C -0.161 4.161 7 C 0.106 3.894 8 N -0.376 5.376 9 C -0.015 4.015 10 C 0.289 3.711 11 O -0.459 6.459 12 N -0.317 5.317 13 C 0.100 3.900 14 C -0.573 4.573 15 H 0.048 0.952 16 C -0.189 4.189 17 N -0.590 5.590 18 Si 0.767 3.233 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.147 1.147 22 C -0.017 4.017 23 C -0.079 4.079 24 C -0.073 4.073 25 N -0.167 5.167 26 C -0.232 4.232 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.154 0.846 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.242 0.758 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.631 16.251 -11.065 22.843 hybrid contribution 1.691 -0.801 0.354 1.904 sum -9.940 15.451 -10.711 21.266 Atomic orbital electron populations 1.20824 0.89770 1.03464 1.02837 1.19957 0.96909 0.92452 0.96052 1.21030 0.94065 0.98009 1.07611 1.20999 0.94405 0.96925 0.97107 1.19607 0.96388 0.92114 1.10905 1.20584 0.91079 1.02341 1.02124 1.17810 0.91735 0.85238 0.94627 1.44589 1.08966 1.01746 1.82275 1.21239 0.93446 0.81687 1.05116 1.21002 0.89409 0.84816 0.75850 1.90661 1.19149 1.84480 1.51597 1.47756 1.07394 1.05374 1.71218 1.19456 0.89624 0.85784 0.95123 1.21611 1.26272 1.16641 0.92816 0.95249 1.25863 0.96615 0.98043 0.98392 1.70066 1.36420 1.30930 1.21547 0.85771 0.79816 0.77369 0.80333 1.20473 1.21073 1.14732 1.21622 0.79233 1.05121 0.95710 1.19854 0.81002 1.07702 0.99321 1.29151 0.94822 0.91535 0.91816 1.81281 1.14526 1.11017 1.09884 1.20707 0.91471 0.99173 1.11883 0.90669 0.90478 0.91089 0.84832 0.84568 0.91338 0.90374 0.93436 0.75848 0.88261 0.86061 0.91812 0.95492 0.92527 0.89323 0.87769 0.84396 0.85169 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.24 0.71 -0.80 16 2 C -0.05 -1.01 5.88 -19.88 -0.12 -1.13 16 3 C -0.19 -3.49 9.70 22.29 0.22 -3.27 16 4 C -0.08 -1.51 9.70 22.25 0.22 -1.29 16 5 C -0.19 -4.31 5.90 -19.73 -0.12 -4.42 16 6 C -0.10 -2.21 9.57 71.23 0.68 -1.53 16 7 C 0.21 5.10 6.63 38.22 0.25 5.35 16 8 N -0.74 -19.44 5.60 -343.11 -1.92 -21.36 16 9 C 0.11 2.58 3.95 85.63 0.34 2.92 16 10 C 0.50 16.43 7.74 87.66 0.68 17.11 16 11 O -0.58 -24.86 15.25 -3.04 -0.05 -24.91 16 12 N -0.59 -18.53 2.46 -826.14 -2.03 -20.56 16 13 C 0.22 9.09 4.23 85.63 0.36 9.45 16 14 C -0.53 -28.75 9.94 25.60 0.25 -28.49 16 15 H 0.03 1.79 8.06 -2.91 -0.02 1.77 16 16 C 0.01 0.48 5.47 84.65 0.46 0.94 16 17 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 18 Si 0.94 41.26 27.47 68.60 1.88 43.14 16 19 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.22 -8.29 6.54 99.48 0.65 -7.64 16 22 C 0.11 2.25 5.17 86.38 0.45 2.70 16 23 C -0.04 -0.52 6.03 28.79 0.17 -0.34 16 24 C 0.24 4.54 15.43 89.44 1.38 5.92 16 25 N -0.49 -12.40 18.54 20.01 0.37 -12.03 16 26 C -0.21 -4.44 8.96 22.40 0.20 -4.24 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 29 H 0.07 0.87 8.08 -2.39 -0.02 0.85 16 30 H 0.13 1.89 8.06 -2.91 -0.02 1.86 16 31 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.38 8.09 -2.38 -0.02 1.36 16 34 H 0.05 1.15 6.55 -2.39 -0.02 1.13 16 35 H 0.40 12.03 5.44 -92.71 -0.50 11.53 16 36 H 0.10 2.05 7.21 -2.38 -0.02 2.03 16 37 H 0.12 1.86 7.00 -2.39 -0.02 1.84 16 38 H 0.06 2.27 7.13 -2.39 -0.02 2.25 16 39 H 0.03 1.20 6.85 -2.38 -0.02 1.18 16 40 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 41 H 0.09 2.11 8.07 -2.38 -0.02 2.09 16 42 H 0.10 1.70 6.44 -2.39 -0.02 1.68 16 43 H 0.14 1.16 7.22 -2.38 -0.02 1.14 16 44 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.13 2.32 6.74 -2.91 -0.02 2.30 16 Total: -1.00 -76.59 378.13 5.15 -71.44 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.45 Total: 23.20 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 6.14 Total: -1.14 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -3.28 Total: -111.74 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.05 Total: -24.91 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 1.88 Total: 43.14 kcal Total: -76.59 5.15 -71.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096969048.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.076 kcal (2) G-P(sol) polarization free energy of solvation -76.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds