Wall clock time and date at job start Tue Mar 31 2020 10:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38289 * 119.92474 * 2 1 4 4 C 1.38103 * 120.07411 * 180.25776 * 3 2 1 5 5 C 1.38918 * 119.92232 * 359.50929 * 4 3 2 6 6 N 1.39673 * 120.07035 * 180.27899 * 5 4 3 7 7 C 1.46500 * 120.00561 * 359.97438 * 6 5 4 8 8 C 1.46507 * 119.99644 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.46934 * 89.99955 * 8 6 5 10 10 O 1.21284 * 120.00144 * 0.02562 * 9 8 6 11 11 N 1.34775 * 120.00140 * 180.02562 * 9 8 6 12 12 C 1.46501 * 120.00040 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47222 * 89.99963 * 12 11 9 14 14 H 1.08005 * 119.99960 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00307 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00170 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 119.99693 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47072 * 90.00165 * 17 15 13 19 19 H 1.48495 * 109.47486 * 210.00098 * 17 15 13 20 20 H 1.48501 * 109.47589 * 330.00104 * 17 15 13 21 21 C 1.46496 * 119.99791 * 359.97438 * 11 9 8 22 22 C 1.53004 * 109.47283 * 90.00054 * 21 11 9 23 23 C 1.47197 * 109.47311 * 179.97438 * 22 21 11 24 24 N 8.81689 * 133.32138 * 163.32415 * 2 1 3 25 25 C 1.38912 * 119.85072 * 0.25753 * 5 4 3 26 26 C 1.38102 * 119.92404 * 359.97438 * 25 5 4 27 27 H 1.09003 * 109.46708 * 270.21216 * 1 2 3 28 28 H 1.09000 * 109.47174 * 30.20687 * 1 2 3 29 29 H 1.08993 * 109.46849 * 150.21278 * 1 2 3 30 30 H 1.07998 * 119.96128 * 0.04337 * 3 2 1 31 31 H 1.08002 * 120.04122 * 179.79346 * 4 3 2 32 32 H 1.09001 * 109.46970 * 89.99950 * 7 6 5 33 33 H 1.08991 * 109.47753 * 209.99992 * 7 6 5 34 34 H 1.09000 * 109.47064 * 330.00449 * 7 6 5 35 35 H 1.08999 * 109.46653 * 209.99713 * 8 6 5 36 36 H 1.08998 * 109.47220 * 330.00138 * 8 6 5 37 37 H 1.08998 * 109.46827 * 209.99296 * 12 11 9 38 38 H 1.08990 * 109.47290 * 329.99780 * 12 11 9 39 39 H 0.97001 * 119.99724 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.47344 * 210.00042 * 21 11 9 41 41 H 1.09003 * 109.47651 * 330.00192 * 21 11 9 42 42 H 1.08995 * 109.46932 * 300.00097 * 22 21 11 43 43 H 1.09004 * 109.46476 * 60.00050 * 22 21 11 44 44 H 1.08001 * 120.03561 * 180.02562 * 25 5 4 45 45 H 1.07998 * 119.96158 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 -0.0054 5 6 4.2740 0.0000 -0.0005 6 7 5.6708 0.0000 0.0000 7 6 6.4033 1.2687 -0.0052 8 6 6.4033 -1.2688 0.0057 9 6 6.6549 -1.7099 -1.4131 10 8 6.2615 -1.0311 -2.3380 11 7 7.3170 -2.8587 -1.6543 12 6 7.5621 -3.2873 -3.0336 13 6 8.8770 -2.7245 -3.5084 14 1 9.4709 -2.1094 -2.8485 15 6 9.3223 -2.9956 -4.7848 16 7 10.4700 -2.5048 -5.1990 17 14 8.2961 -4.0611 -5.9253 18 1 7.3645 -3.2024 -6.7000 19 1 9.1905 -4.7900 -6.8601 20 1 7.5171 -5.0380 -5.1227 21 6 7.7926 -3.6784 -0.5371 22 6 6.7087 -4.6846 -0.1450 23 6 7.1869 -5.5085 0.9771 24 7 7.5562 -6.1447 1.8407 25 6 3.5779 -1.2021 0.0044 26 6 2.1969 -1.1984 0.0049 27 1 -0.3633 0.0038 1.0277 28 1 -0.3633 0.8881 -0.5170 29 1 -0.3633 -0.8918 -0.5105 30 1 1.6550 2.1327 0.0007 31 1 4.1161 2.1385 -0.0087 32 1 6.5846 1.5878 1.0211 33 1 7.3559 1.1362 -0.5181 34 1 5.8144 2.0262 -0.5225 35 1 7.3555 -1.1361 0.5193 36 1 5.8140 -2.0262 0.5226 37 1 7.5968 -4.3759 -3.0750 38 1 6.7589 -2.9247 -3.6749 39 1 10.7830 -2.6952 -6.0971 40 1 8.6938 -4.2135 -0.8368 41 1 8.0176 -3.0365 0.3147 42 1 5.8077 -4.1495 0.1547 43 1 6.4838 -5.3265 -0.9967 44 1 4.1161 -2.1385 0.0086 45 1 1.6550 -2.1327 0.0091 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101561852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:50 Heat of formation + Delta-G solvation = 33.240229 kcal Electronic energy + Delta-G solvation = -26075.837875 eV Core-core repulsion = 22479.963789 eV Total energy + Delta-G solvation = -3595.874086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03048 -38.99898 -37.03512 -36.24762 -35.26788 -32.87375 -31.75859 -31.17039 -31.03630 -29.27503 -27.56503 -27.02026 -24.28880 -23.96843 -22.56184 -22.05495 -20.39647 -18.64807 -17.90327 -17.39512 -16.89834 -16.74452 -16.10048 -15.39819 -15.09909 -14.80195 -14.67540 -14.32298 -14.08214 -13.97325 -13.71935 -13.69835 -13.51563 -13.25148 -12.99864 -12.62354 -12.55462 -12.33559 -12.15129 -12.10120 -12.03367 -11.94050 -11.67361 -11.61438 -11.34067 -11.12226 -10.91888 -10.69983 -10.58979 -10.24728 -9.90258 -9.61997 -9.06011 -8.83035 -8.65624 -7.95467 -7.12401 -6.15451 -4.15145 1.53707 1.67323 2.63988 2.73083 3.02745 3.15865 3.24326 3.29692 3.32777 3.57468 3.93783 4.11806 4.33315 4.76446 4.82579 4.91138 4.95685 4.99861 5.04308 5.13479 5.18428 5.21502 5.25928 5.33056 5.41143 5.49781 5.56389 5.58662 5.67596 5.70576 5.73490 5.89656 5.94923 5.98667 6.07958 6.35749 6.48684 6.54704 6.77198 6.83282 6.94771 7.13364 7.26665 7.48320 7.52262 7.55776 8.03725 8.38070 8.79512 8.87990 9.44269 10.97764 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.004009 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.590296 B = 6982.659527 C = 8029.613810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.155 4.155 3 C -0.073 4.073 4 C -0.193 4.193 5 C 0.226 3.774 6 N -0.610 5.610 7 C 0.097 3.903 8 C 0.101 3.899 9 C 0.485 3.515 10 O -0.515 6.515 11 N -0.594 5.594 12 C 0.215 3.785 13 C -0.531 4.531 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.265 1.265 21 C 0.116 3.884 22 C -0.052 4.052 23 C 0.215 3.785 24 N -0.440 5.440 25 C -0.191 4.191 26 C -0.071 4.071 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.121 0.879 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.032 0.968 38 H 0.038 0.962 39 H 0.265 0.735 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.116 0.884 44 H 0.117 0.883 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.629 3.249 13.114 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.157 4.157 3 C -0.092 4.092 4 C -0.215 4.215 5 C 0.124 3.876 6 N -0.319 5.319 7 C -0.046 4.046 8 C -0.026 4.026 9 C 0.270 3.730 10 O -0.390 6.390 11 N -0.326 5.326 12 C 0.095 3.905 13 C -0.570 4.570 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.010 4.010 22 C -0.093 4.093 23 C -0.103 4.103 24 N -0.118 5.118 25 C -0.214 4.214 26 C -0.090 4.090 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.139 0.861 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.050 0.950 38 H 0.056 0.944 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.096 0.904 42 H 0.123 0.877 43 H 0.134 0.866 44 H 0.135 0.865 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.959 2.704 13.720 19.758 hybrid contribution -0.284 -0.372 -1.218 1.305 sum -14.243 2.332 12.502 19.094 Atomic orbital electron populations 1.20626 0.91812 1.02094 1.01412 1.19604 0.95628 0.93151 1.07312 1.20709 0.93301 0.97205 0.97949 1.20630 0.94237 0.96358 1.10306 1.17776 0.82746 0.93978 0.93064 1.45965 1.02020 1.04821 1.79095 1.21629 0.97151 0.85306 1.00487 1.21463 0.98381 0.87501 0.95282 1.21138 0.78829 0.81388 0.91673 1.90711 1.50019 1.52632 1.45601 1.47949 1.55322 1.21508 1.07848 1.19707 0.97926 0.95059 0.77811 1.21291 1.03379 1.32650 0.99658 0.90741 1.24855 0.94840 0.95589 0.97650 1.69890 1.20092 1.44832 1.18582 0.86872 0.80498 0.81026 0.81409 1.19923 1.21083 1.18969 1.21350 0.96264 0.93021 0.90405 1.19901 1.00558 0.96710 0.92148 1.28954 0.93495 0.93732 0.94098 1.81156 1.08798 1.10130 1.11673 1.20596 0.94334 0.96250 1.10190 1.20708 0.93271 0.97272 0.97726 0.92151 0.92230 0.92176 0.86552 0.86101 0.93404 0.91179 0.91288 0.88011 0.88354 0.95025 0.94364 0.92494 0.88353 0.90390 0.87668 0.86564 0.86525 0.86485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.15 -1.77 5.88 -104.59 -0.62 -2.39 16 3 C -0.07 -0.85 9.69 -39.61 -0.38 -1.23 16 4 C -0.19 -2.44 9.21 -39.38 -0.36 -2.81 16 5 C 0.23 3.10 6.55 -83.78 -0.55 2.55 16 6 N -0.61 -8.16 2.50 -181.00 -0.45 -8.62 16 7 C 0.10 1.14 10.19 59.85 0.61 1.75 16 8 C 0.10 1.26 4.19 -5.19 -0.02 1.24 16 9 C 0.49 8.46 7.74 -10.99 -0.09 8.38 16 10 O -0.52 -11.65 16.01 5.55 0.09 -11.56 16 11 N -0.59 -10.11 2.46 -175.06 -0.43 -10.54 16 12 C 0.22 4.68 4.23 -5.19 -0.02 4.66 16 13 C -0.53 -14.22 9.94 -34.44 -0.34 -14.56 16 14 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -26.71 13.96 55.43 0.77 -25.94 16 17 Si 0.88 20.62 27.47 -169.99 -4.67 15.95 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 21 C 0.12 1.40 5.17 -4.04 -0.02 1.37 16 22 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 23 C 0.22 2.37 15.43 -20.82 -0.32 2.05 16 24 N -0.44 -6.09 18.53 42.09 0.78 -5.31 16 25 C -0.19 -2.48 9.21 -39.38 -0.36 -2.84 16 26 C -0.07 -0.84 9.69 -39.62 -0.38 -1.23 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 29 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.12 1.35 6.14 -52.49 -0.32 1.03 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.07 0.78 6.20 -51.93 -0.32 0.46 16 35 H 0.10 1.06 7.33 -51.93 -0.38 0.68 16 36 H 0.10 0.96 5.24 -51.93 -0.27 0.69 16 37 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 38 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.10 1.29 8.07 -51.93 -0.42 0.87 16 41 H 0.08 0.75 6.44 -51.93 -0.33 0.42 16 42 H 0.11 0.74 7.22 -51.93 -0.37 0.37 16 43 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.12 1.36 6.14 -52.49 -0.32 1.03 16 45 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 378.20 15.07 5.70 5.70 Total: -1.00 -35.12 378.20 -7.42 -42.54 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.44 Total: 0.05 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -2.78 Total: -2.28 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 0.67 Total: -50.40 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.12 -7.42 -42.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101561852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.781 kcal (2) G-P(sol) polarization free energy of solvation -35.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds