Wall clock time and date at job start Tue Mar 31 2020 10:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 119.99944 * 2 1 4 4 C 1.38212 * 120.00198 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99862 * 0.27053 * 4 3 2 6 6 C 1.38213 * 119.99855 * 359.51686 * 5 4 3 7 7 C 1.50699 * 120.00337 * 180.24893 * 6 5 4 8 8 N 1.46494 * 109.47365 * 270.21686 * 7 6 5 9 9 C 1.34773 * 120.00217 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99919 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00547 * 179.97438 * 9 8 7 12 12 N 1.46900 * 109.47507 * 179.97438 * 11 9 8 13 13 C 1.46896 * 110.99744 * 190.00128 * 12 11 9 14 14 C 1.50706 * 109.46906 * 168.42533 * 13 12 11 15 15 H 1.07993 * 119.99944 * 354.95534 * 14 13 12 16 16 C 1.37881 * 119.99599 * 174.95716 * 14 13 12 17 17 N 1.31508 * 120.00653 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99565 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47131 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47288 * 119.99819 * 18 16 14 21 21 H 1.48497 * 109.46817 * 240.00330 * 18 16 14 22 22 C 1.46896 * 111.00151 * 66.04577 * 12 11 9 23 23 C 1.53002 * 109.47203 * 61.42725 * 22 12 11 24 24 C 1.47196 * 109.47390 * 179.03281 * 23 22 12 25 25 N 9.39021 * 97.40131 * 194.87777 * 2 1 3 26 26 C 1.38209 * 120.00035 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46923 * 90.00153 * 1 2 3 28 28 H 1.08994 * 109.47093 * 210.00255 * 1 2 3 29 29 H 1.08997 * 109.47002 * 330.00062 * 1 2 3 30 30 H 1.08003 * 120.00071 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00485 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.00079 * 179.72507 * 5 4 3 33 33 H 1.09001 * 109.46871 * 30.21416 * 7 6 5 34 34 H 1.09005 * 109.47051 * 150.20895 * 7 6 5 35 35 H 0.96997 * 119.99854 * 359.97438 * 8 7 6 36 36 H 1.09001 * 109.46934 * 300.00017 * 11 9 8 37 37 H 1.08998 * 109.46961 * 59.99684 * 11 9 8 38 38 H 1.08999 * 109.47107 * 288.42109 * 13 12 11 39 39 H 1.09002 * 109.47728 * 48.42201 * 13 12 11 40 40 H 0.96995 * 120.00473 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47233 * 181.43169 * 22 12 11 42 42 H 1.09000 * 109.46838 * 301.43480 * 22 12 11 43 43 H 1.08995 * 109.47312 * 299.03614 * 23 22 12 44 44 H 1.08999 * 109.46840 * 59.03427 * 23 22 12 45 45 H 1.08003 * 120.00230 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0046 6 6 3.5807 -1.1970 -0.0001 7 6 4.3341 -2.5021 0.0000 8 7 4.5785 -2.9250 -1.3812 9 6 5.2414 -4.0723 -1.6273 10 8 5.6362 -4.7544 -0.7054 11 6 5.4923 -4.5078 -3.0480 12 7 6.2279 -5.7793 -3.0479 13 6 6.6970 -6.1162 -4.3986 14 6 7.6765 -7.2588 -4.3197 15 1 7.9878 -7.6377 -3.3575 16 6 8.1751 -7.8204 -5.4761 17 7 7.7965 -7.3586 -6.6478 18 14 9.3887 -9.2372 -5.3783 19 1 9.6511 -9.5668 -3.9543 20 1 8.8197 -10.4246 -6.0650 21 1 10.6604 -8.8460 -6.0378 22 6 5.4070 -6.8624 -2.4903 23 6 4.1582 -7.0521 -3.3536 24 6 3.3471 -8.1527 -2.8082 25 7 2.7166 -8.9998 -2.3909 26 6 2.1981 -1.1969 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 0.0000 -0.0087 33 1 5.2865 -2.3717 0.5139 34 1 3.7450 -3.2617 0.5139 35 1 4.2631 -2.3793 -2.1185 36 1 4.5398 -4.6387 -3.5615 37 1 6.0808 -3.7480 -3.5623 38 1 5.8474 -6.4079 -5.0160 39 1 7.1862 -5.2481 -4.8405 40 1 8.1470 -7.7539 -7.4612 41 1 5.9845 -7.7868 -2.4785 42 1 5.1101 -6.6064 -1.4732 43 1 3.5720 -6.1332 -3.3514 44 1 4.4553 -7.2911 -4.3747 45 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132870178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:30 Heat of formation + Delta-G solvation = 16.976382 kcal Electronic energy + Delta-G solvation = -25069.383296 eV Core-core repulsion = 21472.803957 eV Total energy + Delta-G solvation = -3596.579339 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08637 -39.34451 -37.30053 -35.84565 -34.99008 -32.97255 -32.65543 -31.63161 -30.50492 -28.53314 -27.31754 -26.47505 -25.11385 -23.54776 -22.40307 -21.03518 -20.70923 -19.69921 -17.59994 -17.02521 -16.61568 -16.21249 -16.00056 -15.87119 -15.37463 -14.89182 -14.75187 -14.54810 -14.12963 -14.01636 -13.69082 -13.59009 -13.42079 -13.09820 -13.01382 -12.86512 -12.44224 -12.34830 -12.27805 -12.04884 -11.86842 -11.54034 -11.36835 -11.29295 -11.22470 -11.13086 -10.76489 -10.66453 -10.19954 -10.02687 -9.58077 -9.29615 -9.09431 -8.97921 -8.90247 -8.48892 -7.37590 -6.08785 -4.09384 0.93292 1.06081 2.92159 3.11957 3.15134 3.15451 3.30500 3.38847 3.44622 3.62498 4.33890 4.35155 4.42969 4.47117 4.57769 4.80831 4.95122 4.97826 5.07550 5.09450 5.21110 5.24763 5.28005 5.38516 5.40729 5.48974 5.53567 5.59380 5.72558 5.75258 5.78119 5.81668 5.93813 6.13093 6.23948 6.30079 6.32187 6.45766 6.67243 6.76493 7.09800 7.18756 7.55653 7.75452 7.87388 7.98188 8.05195 8.40081 8.50267 8.99806 9.55906 11.01664 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002610 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.572908 B =10724.850649 C =11617.600578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.116 4.116 4 C -0.118 4.118 5 C -0.106 4.106 6 C -0.100 4.100 7 C 0.162 3.838 8 N -0.736 5.736 9 C 0.513 3.487 10 O -0.517 6.517 11 C 0.029 3.971 12 N -0.509 5.509 13 C 0.186 3.814 14 C -0.506 4.506 15 H 0.067 0.933 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.895 3.105 19 H -0.271 1.271 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.067 3.933 23 C -0.076 4.076 24 C 0.226 3.774 25 N -0.461 5.461 26 C -0.102 4.102 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.399 0.601 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.006 0.994 39 H 0.031 0.969 40 H 0.261 0.739 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.121 0.879 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 19.251 9.913 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.089 4.089 3 C -0.135 4.135 4 C -0.136 4.136 5 C -0.125 4.125 6 C -0.101 4.101 7 C 0.039 3.961 8 N -0.391 5.391 9 C 0.299 3.701 10 O -0.391 6.391 11 C -0.102 4.102 12 N -0.232 5.232 13 C 0.061 3.939 14 C -0.545 4.545 15 H 0.085 0.915 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.723 3.277 19 H -0.195 1.195 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.064 4.064 23 C -0.117 4.117 24 C -0.091 4.091 25 N -0.139 5.139 26 C -0.121 4.121 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.143 0.857 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.233 0.767 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.024 0.976 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.139 0.861 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.668 17.487 11.328 24.384 hybrid contribution 0.087 -0.078 -1.250 1.255 sum -12.580 17.409 10.078 23.725 Atomic orbital electron populations 1.20804 0.91101 1.02835 1.02485 1.19936 0.96178 0.93097 0.99738 1.21086 0.94341 0.97532 1.00503 1.21155 0.94274 0.98080 1.00108 1.21131 1.00159 0.91832 0.99352 1.19928 0.93773 0.94764 1.01585 1.20108 0.99467 0.92162 0.84352 1.46120 1.60022 1.25080 1.07864 1.20996 0.76712 0.80005 0.92352 1.90671 1.49042 1.53097 1.46286 1.22047 0.99253 0.96598 0.92328 1.62117 1.34735 0.99094 1.27261 1.19926 0.95128 0.97068 0.81755 1.21169 1.24823 1.15628 0.92862 0.91522 1.24946 0.96835 0.97317 0.95305 1.69937 1.44472 1.42102 0.97310 0.86479 0.80929 0.82001 0.78312 1.19542 1.21143 1.21036 1.22233 0.89731 0.97198 0.97192 1.20268 0.96369 0.91551 1.03561 1.29187 0.92969 0.94169 0.92786 1.81105 1.11064 1.11372 1.10380 1.21010 0.93445 0.97815 0.99783 0.91043 0.91443 0.91562 0.86124 0.85886 0.85727 0.90709 0.90880 0.76702 0.92340 0.88067 0.97599 0.95124 0.92929 0.88990 0.89875 0.88792 0.86081 0.85846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.09 -0.68 5.88 -104.63 -0.62 -1.29 16 3 C -0.12 -0.84 9.70 -39.59 -0.38 -1.22 16 4 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 5 C -0.11 -0.86 9.70 -39.58 -0.38 -1.25 16 6 C -0.10 -0.87 5.25 -104.62 -0.55 -1.42 16 7 C 0.16 1.64 5.80 -5.20 -0.03 1.61 16 8 N -0.74 -7.81 5.55 -61.47 -0.34 -8.15 16 9 C 0.51 7.39 7.54 -10.99 -0.08 7.31 16 10 O -0.52 -9.51 14.32 5.55 0.08 -9.43 16 11 C 0.03 0.43 5.23 -4.98 -0.03 0.40 16 12 N -0.51 -9.77 4.43 -237.52 -1.05 -10.82 16 13 C 0.19 4.21 4.54 -4.98 -0.02 4.19 16 14 C -0.51 -13.22 8.40 -34.44 -0.29 -13.51 16 15 H 0.07 1.78 7.42 -52.49 -0.39 1.40 16 16 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 17 N -0.90 -25.00 13.29 55.43 0.74 -24.26 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C 0.07 1.20 4.78 -3.83 -0.02 1.18 16 23 C -0.08 -1.16 5.05 -29.52 -0.15 -1.31 16 24 C 0.23 3.83 15.43 -20.78 -0.32 3.51 16 25 N -0.46 -8.71 18.53 42.13 0.78 -7.93 16 26 C -0.10 -0.84 9.36 -39.58 -0.37 -1.21 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 30 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 31 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 32 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 33 H 0.07 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 35 H 0.40 3.33 8.46 -40.82 -0.35 2.99 16 36 H 0.06 0.72 6.07 -51.93 -0.31 0.40 16 37 H 0.10 1.38 7.91 -51.93 -0.41 0.97 16 38 H 0.01 0.15 6.00 -51.93 -0.31 -0.17 16 39 H 0.03 0.74 7.90 -51.93 -0.41 0.33 16 40 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.09 1.86 7.01 -51.93 -0.36 1.50 16 42 H 0.08 1.52 5.86 -51.93 -0.30 1.21 16 43 H 0.09 1.18 6.36 -51.93 -0.33 0.85 16 44 H 0.12 2.02 6.26 -51.93 -0.32 1.69 16 45 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 379.40 15.07 5.72 5.72 Total: -1.00 -31.80 379.40 -8.91 -40.71 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.43 Total: 1.21 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -3.38 Total: -3.11 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.12 Total: -51.16 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.43 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.80 -8.91 -40.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132870178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.685 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds