Wall clock time and date at job start Tue Mar 31 2020 10:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 119.99944 * 2 1 4 4 C 1.38212 * 120.00198 * 179.97438 * 3 2 1 5 5 C 1.38262 * 119.99862 * 0.27053 * 4 3 2 6 6 C 1.38213 * 119.99855 * 359.51686 * 5 4 3 7 7 C 1.50699 * 120.00337 * 180.24893 * 6 5 4 8 8 N 1.46494 * 109.47365 * 270.21686 * 7 6 5 9 9 C 1.34773 * 120.00217 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99919 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00547 * 179.97438 * 9 8 7 12 12 N 1.46900 * 109.47507 * 179.97438 * 11 9 8 13 13 C 1.46896 * 110.99744 * 190.00128 * 12 11 9 14 14 C 1.50706 * 109.46906 * 168.42533 * 13 12 11 15 15 H 1.07993 * 119.99944 * 354.95534 * 14 13 12 16 16 C 1.37881 * 119.99599 * 174.95716 * 14 13 12 17 17 N 1.31508 * 120.00653 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99565 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47131 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47288 * 119.99819 * 18 16 14 21 21 H 1.48497 * 109.46817 * 240.00330 * 18 16 14 22 22 C 1.46896 * 111.00151 * 66.04577 * 12 11 9 23 23 C 1.53002 * 109.47203 * 61.42725 * 22 12 11 24 24 C 1.47196 * 109.47390 * 179.03281 * 23 22 12 25 25 N 9.39021 * 97.40131 * 194.87777 * 2 1 3 26 26 C 1.38209 * 120.00035 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46923 * 90.00153 * 1 2 3 28 28 H 1.08994 * 109.47093 * 210.00255 * 1 2 3 29 29 H 1.08997 * 109.47002 * 330.00062 * 1 2 3 30 30 H 1.08003 * 120.00071 * 359.97438 * 3 2 1 31 31 H 1.07994 * 120.00485 * 180.02562 * 4 3 2 32 32 H 1.07998 * 120.00079 * 179.72507 * 5 4 3 33 33 H 1.09001 * 109.46871 * 30.21416 * 7 6 5 34 34 H 1.09005 * 109.47051 * 150.20895 * 7 6 5 35 35 H 0.96997 * 119.99854 * 359.97438 * 8 7 6 36 36 H 1.09001 * 109.46934 * 300.00017 * 11 9 8 37 37 H 1.08998 * 109.46961 * 59.99684 * 11 9 8 38 38 H 1.08999 * 109.47107 * 288.42109 * 13 12 11 39 39 H 1.09002 * 109.47728 * 48.42201 * 13 12 11 40 40 H 0.96995 * 120.00473 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.47233 * 181.43169 * 22 12 11 42 42 H 1.09000 * 109.46838 * 301.43480 * 22 12 11 43 43 H 1.08995 * 109.47312 * 299.03614 * 23 22 12 44 44 H 1.08999 * 109.46840 * 59.03427 * 23 22 12 45 45 H 1.08003 * 120.00230 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 -0.0046 6 6 3.5807 -1.1970 -0.0001 7 6 4.3341 -2.5021 0.0000 8 7 4.5785 -2.9250 -1.3812 9 6 5.2414 -4.0723 -1.6273 10 8 5.6362 -4.7544 -0.7054 11 6 5.4923 -4.5078 -3.0480 12 7 6.2279 -5.7793 -3.0479 13 6 6.6970 -6.1162 -4.3986 14 6 7.6765 -7.2588 -4.3197 15 1 7.9878 -7.6377 -3.3575 16 6 8.1751 -7.8204 -5.4761 17 7 7.7965 -7.3586 -6.6478 18 14 9.3887 -9.2372 -5.3783 19 1 9.6511 -9.5668 -3.9543 20 1 8.8197 -10.4246 -6.0650 21 1 10.6604 -8.8460 -6.0378 22 6 5.4070 -6.8624 -2.4903 23 6 4.1582 -7.0521 -3.3536 24 6 3.3471 -8.1527 -2.8082 25 7 2.7166 -8.9998 -2.3909 26 6 2.1981 -1.1969 -0.0005 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 1.6582 2.1326 -0.0004 31 1 4.1204 2.1326 0.0010 32 1 5.3517 0.0000 -0.0087 33 1 5.2865 -2.3717 0.5139 34 1 3.7450 -3.2617 0.5139 35 1 4.2631 -2.3793 -2.1185 36 1 4.5398 -4.6387 -3.5615 37 1 6.0808 -3.7480 -3.5623 38 1 5.8474 -6.4079 -5.0160 39 1 7.1862 -5.2481 -4.8405 40 1 8.1470 -7.7539 -7.4612 41 1 5.9845 -7.7868 -2.4785 42 1 5.1101 -6.6064 -1.4732 43 1 3.5720 -6.1332 -3.3514 44 1 4.4553 -7.2911 -4.3747 45 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132870178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:30 Heat of formation + Delta-G solvation = -2.724548 kcal Electronic energy + Delta-G solvation = -25070.237592 eV Core-core repulsion = 21472.803957 eV Total energy + Delta-G solvation = -3597.433636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.03603 -40.21340 -38.67168 -37.28303 -35.96768 -34.63320 -33.58983 -32.41966 -31.82377 -30.00982 -28.01935 -27.59762 -26.24636 -25.26595 -22.99844 -22.18609 -21.60701 -20.96439 -19.00176 -18.25442 -17.85668 -17.47544 -16.94694 -16.82268 -16.56285 -16.26015 -15.98507 -15.55003 -15.32980 -15.07412 -14.94174 -14.56546 -14.38122 -14.13886 -14.05606 -13.80454 -13.70424 -13.55429 -13.27464 -13.01664 -12.95149 -12.91297 -12.83443 -12.62823 -12.55190 -12.44584 -11.96663 -11.92920 -11.86111 -11.55099 -11.31060 -10.66316 -10.52049 -10.01473 -9.74977 -9.52207 -8.87425 -8.13130 -6.18340 0.32540 0.48848 1.42276 1.46173 1.56778 1.73594 1.76743 1.78891 2.23905 2.47102 2.91263 3.00347 3.21251 3.54323 3.68136 3.90671 4.02485 4.07126 4.16047 4.19973 4.28064 4.39762 4.46306 4.50189 4.56373 4.62895 4.67193 4.76011 4.85101 4.86386 4.88528 5.01010 5.16689 5.21833 5.32751 5.39061 5.43504 5.52217 5.57354 5.66679 5.70852 5.75529 6.11350 6.14125 6.33614 6.53963 6.57635 6.77586 6.97304 7.41272 7.50280 8.96262 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.017284 B = 0.002610 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.572908 B =10724.850649 C =11617.600578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.097 4.097 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.116 4.116 6 C -0.107 4.107 7 C 0.167 3.833 8 N -0.716 5.716 9 C 0.517 3.483 10 O -0.562 6.562 11 C 0.028 3.972 12 N -0.528 5.528 13 C 0.200 3.800 14 C -0.516 4.516 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.925 5.925 18 Si 0.947 3.053 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.280 1.280 22 C 0.074 3.926 23 C -0.061 4.061 24 C 0.244 3.756 25 N -0.494 5.494 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.140 0.860 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.413 0.587 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.005 0.995 39 H 0.016 0.984 40 H 0.263 0.737 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.114 0.886 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 21.016 9.871 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.097 4.097 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.134 4.134 6 C -0.107 4.107 7 C 0.043 3.957 8 N -0.370 5.370 9 C 0.304 3.696 10 O -0.440 6.440 11 C -0.103 4.103 12 N -0.250 5.250 13 C 0.075 3.925 14 C -0.555 4.555 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.565 5.565 18 Si 0.774 3.226 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.206 1.206 22 C -0.056 4.056 23 C -0.103 4.103 24 C -0.073 4.073 25 N -0.173 5.173 26 C -0.130 4.130 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.158 0.842 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.250 0.750 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.023 0.977 39 H 0.034 0.966 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.102 0.898 43 H 0.150 0.850 44 H 0.132 0.868 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.877 19.294 11.283 26.309 hybrid contribution 0.427 -0.509 -1.174 1.350 sum -13.449 18.785 10.109 25.218 Atomic orbital electron populations 1.20838 0.89788 1.03491 1.03038 1.20210 0.97284 0.92965 0.99237 1.21395 0.94495 0.98278 0.99642 1.21418 0.94618 0.98503 0.99452 1.21262 1.00535 0.92040 0.99610 1.19780 0.93923 0.94086 1.02909 1.20062 0.99136 0.92882 0.83573 1.45925 1.58366 1.23830 1.08854 1.20898 0.76567 0.80489 0.91648 1.90664 1.51243 1.54753 1.47335 1.22137 1.00494 0.94565 0.93093 1.61889 1.36904 1.01046 1.25185 1.19587 0.94306 0.95158 0.83463 1.21453 1.25342 1.16527 0.92146 0.92972 1.25572 0.98346 0.99358 0.95208 1.70003 1.45605 1.43243 0.97695 0.85660 0.79268 0.79669 0.77995 1.19749 1.20828 1.20601 1.22023 0.90177 0.95698 0.97695 1.20197 0.95412 0.92628 1.02072 1.29355 0.92260 0.93735 0.91923 1.81122 1.12386 1.12364 1.11383 1.21121 0.93329 0.98447 1.00129 0.90460 0.91311 0.90453 0.84177 0.84068 0.85356 0.91622 0.91543 0.75034 0.89131 0.86881 0.97706 0.96615 0.92830 0.91991 0.89831 0.85023 0.86846 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 10.01 71.24 0.71 -0.32 16 2 C -0.10 -1.27 5.88 -19.87 -0.12 -1.39 16 3 C -0.12 -1.44 9.70 22.27 0.22 -1.22 16 4 C -0.12 -1.53 10.05 22.27 0.22 -1.30 16 5 C -0.12 -1.71 9.70 22.27 0.22 -1.50 16 6 C -0.11 -1.72 5.25 -19.86 -0.10 -1.82 16 7 C 0.17 3.23 5.80 85.63 0.50 3.73 16 8 N -0.72 -14.03 5.55 -466.79 -2.59 -16.62 16 9 C 0.52 14.23 7.54 87.66 0.66 14.89 16 10 O -0.56 -20.57 14.32 -3.05 -0.04 -20.61 16 11 C 0.03 0.76 5.23 85.56 0.45 1.21 16 12 N -0.53 -19.96 4.43 -905.38 -4.01 -23.97 16 13 C 0.20 9.05 4.54 85.56 0.39 9.44 16 14 C -0.52 -27.20 8.40 25.60 0.21 -26.98 16 15 H 0.05 2.85 7.42 -2.91 -0.02 2.83 16 16 C 0.01 0.74 5.46 84.66 0.46 1.20 16 17 N -0.92 -51.38 13.29 21.45 0.28 -51.10 16 18 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C 0.07 2.66 4.78 86.30 0.41 3.07 16 23 C -0.06 -1.80 5.05 28.79 0.15 -1.65 16 24 C 0.24 8.02 15.43 89.45 1.38 9.40 16 25 N -0.49 -18.35 18.53 20.00 0.37 -17.98 16 26 C -0.11 -1.68 9.36 22.27 0.21 -1.48 16 27 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.08 0.52 8.09 -2.39 -0.02 0.50 16 30 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 31 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 32 H 0.13 1.73 8.06 -2.91 -0.02 1.70 16 33 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 34 H 0.07 1.40 8.09 -2.38 -0.02 1.38 16 35 H 0.41 5.92 8.46 -92.71 -0.78 5.13 16 36 H 0.09 1.91 6.07 -2.39 -0.01 1.90 16 37 H 0.11 2.85 7.91 -2.39 -0.02 2.83 16 38 H 0.01 0.24 6.00 -2.39 -0.01 0.22 16 39 H 0.02 0.76 7.90 -2.39 -0.02 0.74 16 40 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 41 H 0.06 2.57 7.01 -2.39 -0.02 2.55 16 42 H 0.08 3.03 5.86 -2.39 -0.01 3.02 16 43 H 0.13 2.86 6.36 -2.39 -0.02 2.85 16 44 H 0.11 3.63 6.26 -2.39 -0.01 3.61 16 45 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -68.51 379.40 2.23 -66.28 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: 0.23 Total: 13.25 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.97 Total: 5.28 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -5.94 Total: -109.67 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.04 Total: -20.61 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -68.51 2.23 -66.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132870178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.551 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds