Wall clock time and date at job start Tue Mar 31 2020 10:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38214 * 120.00138 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.50695 * 109.47444 * 84.99942 * 8 7 2 10 10 N 1.29952 * 126.28821 * 269.68609 * 9 8 7 11 11 O 1.21296 * 110.24830 * 179.84069 * 10 9 8 12 12 C 1.33638 * 109.81495 * 0.42528 * 11 10 9 13 13 C 1.50700 * 126.55058 * 179.71652 * 12 11 10 14 14 N 1.46907 * 109.46894 * 270.02476 * 13 12 11 15 15 C 1.46906 * 110.99879 * 66.05035 * 14 13 12 16 16 C 1.46904 * 110.99576 * 189.99788 * 14 13 12 17 17 H 1.09001 * 109.46821 * 55.00446 * 16 14 13 18 18 C 1.52995 * 109.47645 * 295.00154 * 16 14 13 19 19 C 1.50702 * 109.46631 * 174.99928 * 16 14 13 20 20 H 1.08002 * 120.00614 * 0.02562 * 19 16 14 21 21 C 1.37882 * 119.99694 * 180.02562 * 19 16 14 22 22 N 1.31514 * 120.00065 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99787 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.47336 * 60.00154 * 23 21 19 25 25 H 1.48502 * 109.47216 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47414 * 300.00163 * 23 21 19 27 27 N 1.31122 * 106.89702 * 359.73905 * 12 11 10 28 28 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 31 31 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.99876 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.99584 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 36 36 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 37 37 H 1.09002 * 109.47345 * 30.02339 * 13 12 11 38 38 H 1.08993 * 109.47335 * 150.02869 * 13 12 11 39 39 H 1.08996 * 109.47105 * 59.99809 * 15 14 13 40 40 H 1.09001 * 109.46524 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.46552 * 299.99248 * 15 14 13 42 42 H 1.08992 * 109.47233 * 180.02562 * 18 16 14 43 43 H 1.08997 * 109.46794 * 300.00228 * 18 16 14 44 44 H 1.09000 * 109.46864 * 59.99672 * 18 16 14 45 45 H 0.96996 * 119.99852 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0867 -2.8817 -1.4021 10 7 -0.0023 -2.5581 -2.0332 11 8 0.0122 -3.0147 -3.1568 12 6 1.1419 -3.7014 -3.3522 13 6 1.5446 -4.4278 -4.6097 14 7 1.0572 -5.8125 -4.5526 15 6 -0.4110 -5.8553 -4.5792 16 6 1.6271 -6.6164 -5.6421 17 1 2.7147 -6.5523 -5.6104 18 6 1.1238 -6.0848 -6.9855 19 6 1.2037 -8.0537 -5.4802 20 1 0.5740 -8.3411 -4.6512 21 6 1.6204 -9.0018 -6.3905 22 7 2.3877 -8.6519 -7.3997 23 14 1.0951 -10.7832 -6.1903 24 1 -0.3867 -10.8703 -6.2344 25 1 1.6722 -11.5962 -7.2908 26 1 1.5825 -11.2994 -4.8860 27 7 1.8329 -3.6227 -2.2406 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 0.0005 34 1 4.1207 -2.1323 0.0001 35 1 2.0694 -3.2804 0.4497 36 1 0.5337 -2.3930 0.6002 37 1 1.1109 -3.9254 -5.4743 38 1 2.6310 -4.4284 -4.6970 39 1 -0.7713 -5.3956 -5.4994 40 1 -0.7450 -6.8920 -4.5363 41 1 -0.8059 -5.3103 -3.7218 42 1 1.5463 -6.6815 -7.7938 43 1 0.0362 -6.1489 -7.0172 44 1 1.4299 -5.0452 -7.1025 45 1 2.6811 -9.3190 -8.0399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161800671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:13 Heat of formation + Delta-G solvation = 97.266883 kcal Electronic energy + Delta-G solvation = -25779.702961 eV Core-core repulsion = 22186.605279 eV Total energy + Delta-G solvation = -3593.097682 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.31900 -39.76683 -37.53276 -35.94064 -33.95298 -33.04930 -32.42962 -31.63551 -28.99965 -28.12353 -27.49516 -26.76731 -25.25246 -24.41871 -23.22939 -22.42501 -21.50151 -20.56604 -19.43967 -17.89003 -17.23521 -16.51200 -16.31451 -15.78769 -15.32895 -15.16826 -14.82788 -14.57122 -14.24041 -13.90804 -13.56478 -13.39758 -13.26230 -13.01895 -12.79602 -12.63012 -12.23227 -12.16687 -12.06093 -11.66249 -11.57014 -11.29159 -11.21552 -11.13910 -10.98728 -10.83025 -10.79336 -10.74328 -10.59319 -10.11726 -10.02563 -9.66933 -9.00895 -8.99680 -8.80307 -8.45223 -7.42787 -6.07815 -4.11945 1.08029 1.20712 1.40394 2.46483 3.09023 3.30173 3.34643 3.37842 3.47628 3.91380 4.20359 4.37027 4.55312 4.62580 4.75951 4.83328 4.92769 5.00174 5.10758 5.23477 5.25210 5.36610 5.46163 5.52656 5.57216 5.61865 5.69433 5.76764 5.85459 6.00078 6.02214 6.04333 6.20486 6.27639 6.28154 6.32432 6.45921 6.54871 6.70597 6.78520 6.81664 6.95808 7.27785 7.58170 7.70919 7.94111 8.22063 8.40462 8.41857 8.92251 9.53148 10.99356 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.002592 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.865408 B =10801.092933 C =11039.041234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.072 4.072 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.128 4.128 6 C -0.096 4.096 7 C -0.087 4.087 8 C 0.011 3.989 9 C 0.173 3.827 10 N -0.389 5.389 11 O 0.068 5.932 12 C 0.212 3.788 13 C 0.139 3.861 14 N -0.526 5.526 15 C 0.028 3.972 16 C 0.214 3.786 17 H 0.046 0.954 18 C -0.176 4.176 19 C -0.503 4.503 20 H 0.063 0.937 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.276 1.276 27 N -0.471 5.471 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.114 0.886 39 H 0.026 0.974 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.092 0.908 43 H 0.034 0.966 44 H 0.010 0.990 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 17.680 12.635 21.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.072 4.072 3 C -0.143 4.143 4 C -0.133 4.133 5 C -0.146 4.146 6 C -0.114 4.114 7 C -0.088 4.088 8 C -0.027 4.027 9 C -0.100 4.100 10 N -0.099 5.099 11 O 0.011 5.989 12 C -0.009 4.009 13 C 0.009 3.991 14 N -0.252 5.252 15 C -0.120 4.120 16 C 0.109 3.891 17 H 0.064 0.936 18 C -0.236 4.236 19 C -0.541 4.541 20 H 0.082 0.918 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.726 3.274 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.202 1.202 27 N -0.205 5.205 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.084 0.916 38 H 0.132 0.868 39 H 0.044 0.956 40 H 0.101 0.899 41 H 0.057 0.943 42 H 0.111 0.889 43 H 0.053 0.947 44 H 0.029 0.971 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.660 17.776 13.540 22.355 hybrid contribution -0.456 -0.671 -0.938 1.240 sum -1.116 17.105 12.602 21.275 Atomic orbital electron populations 1.20877 0.90979 1.02570 1.02995 1.19833 0.96238 0.92549 0.98564 1.20999 0.94301 0.97309 1.01683 1.21155 0.94284 0.98093 0.99792 1.21132 0.99966 0.92397 1.01106 1.21124 0.93328 0.98625 0.98361 1.19444 0.93736 0.93360 1.02309 1.18846 1.01451 0.95367 0.87063 1.25486 0.88125 0.96631 0.99760 1.74547 1.22209 1.20125 0.93039 1.85277 1.38598 1.50034 1.24966 1.29055 0.81960 0.92012 0.97868 1.20638 1.02214 0.90413 0.85862 1.62437 1.07675 1.05360 1.49696 1.22345 0.88293 1.03079 0.98272 1.19380 0.95305 0.91381 0.83052 0.93628 1.22460 0.99845 0.97215 1.04032 1.21015 1.31474 0.91303 1.10355 0.91846 1.24903 0.95052 0.99006 0.95131 1.69859 1.35180 1.34057 1.14112 0.86550 0.78776 0.84331 0.77694 1.20327 1.21344 1.20184 1.71902 1.29999 1.18092 1.00519 0.90603 0.91680 0.91208 0.86098 0.86129 0.85932 0.85470 0.87804 0.88149 0.91613 0.86825 0.95554 0.89871 0.94310 0.88946 0.94741 0.97146 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.61 36.01 0.35 -0.79 16 2 C -0.07 -0.78 5.88 -104.62 -0.62 -1.40 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.61 16 4 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 5 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 6 C -0.10 -1.06 9.68 -39.58 -0.38 -1.45 16 7 C -0.09 -1.01 5.12 -104.63 -0.54 -1.55 16 8 C 0.01 0.13 5.47 -29.04 -0.16 -0.03 16 9 C 0.17 2.64 7.45 -156.37 -1.17 1.47 16 10 N -0.39 -6.18 12.16 30.90 0.38 -5.81 16 11 O 0.07 1.12 10.73 18.11 0.19 1.31 16 12 C 0.21 3.59 7.07 -13.06 -0.09 3.50 16 13 C 0.14 2.38 5.03 -4.97 -0.03 2.36 16 14 N -0.53 -10.75 4.73 -237.72 -1.13 -11.87 16 15 C 0.03 0.54 8.60 60.07 0.52 1.06 16 16 C 0.21 5.04 2.34 -68.86 -0.16 4.88 16 17 H 0.05 1.17 8.03 -51.93 -0.42 0.75 16 18 C -0.18 -3.93 8.28 37.16 0.31 -3.62 16 19 C -0.50 -13.15 7.88 -34.44 -0.27 -13.42 16 20 H 0.06 1.67 6.77 -52.49 -0.36 1.32 16 21 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 22 N -0.89 -24.41 11.32 55.43 0.63 -23.78 16 23 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 N -0.47 -8.12 11.55 -9.87 -0.11 -8.24 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.07 0.65 6.02 -51.93 -0.31 0.34 16 31 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 35 H 0.10 1.11 8.05 -51.92 -0.42 0.69 16 36 H 0.10 1.02 6.16 -51.93 -0.32 0.70 16 37 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 38 H 0.11 1.89 8.00 -51.93 -0.42 1.48 16 39 H 0.03 0.47 6.51 -51.93 -0.34 0.14 16 40 H 0.08 1.69 6.41 -51.93 -0.33 1.36 16 41 H 0.04 0.68 6.83 -51.93 -0.35 0.33 16 42 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 43 H 0.03 0.74 6.47 -51.93 -0.34 0.41 16 44 H 0.01 0.19 6.75 -51.93 -0.35 -0.16 16 45 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -28.74 364.64 -9.37 -38.11 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.29 Total: 1.23 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -3.51 Total: -12.22 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -0.24 Total: -49.70 kcal Atomic # 8 Polarization: 1.12 SS G_CDS: 0.19 Total: 1.31 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.74 -9.37 -38.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161800671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.378 kcal (2) G-P(sol) polarization free energy of solvation -28.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds