Wall clock time and date at job start Tue Mar 31 2020 10:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38251 * 120.00020 * 2 1 4 4 C 1.38216 * 120.00452 * 179.97438 * 3 2 1 5 5 C 1.38260 * 119.99407 * 0.02562 * 4 3 2 6 6 C 1.38214 * 120.00138 * 359.97438 * 5 4 3 7 7 C 1.38218 * 119.99968 * 179.72146 * 2 1 3 8 8 C 1.50695 * 119.99818 * 0.02562 * 7 2 1 9 9 C 1.50695 * 109.47444 * 84.99942 * 8 7 2 10 10 N 1.29952 * 126.28821 * 269.68609 * 9 8 7 11 11 O 1.21296 * 110.24830 * 179.84069 * 10 9 8 12 12 C 1.33638 * 109.81495 * 0.42528 * 11 10 9 13 13 C 1.50700 * 126.55058 * 179.71652 * 12 11 10 14 14 N 1.46907 * 109.46894 * 270.02476 * 13 12 11 15 15 C 1.46906 * 110.99879 * 66.05035 * 14 13 12 16 16 C 1.46904 * 110.99576 * 189.99788 * 14 13 12 17 17 H 1.09001 * 109.46821 * 55.00446 * 16 14 13 18 18 C 1.52995 * 109.47645 * 295.00154 * 16 14 13 19 19 C 1.50702 * 109.46631 * 174.99928 * 16 14 13 20 20 H 1.08002 * 120.00614 * 0.02562 * 19 16 14 21 21 C 1.37882 * 119.99694 * 180.02562 * 19 16 14 22 22 N 1.31514 * 120.00065 * 0.02562 * 21 19 16 23 23 Si 1.86799 * 119.99787 * 180.02562 * 21 19 16 24 24 H 1.48499 * 109.47336 * 60.00154 * 23 21 19 25 25 H 1.48502 * 109.47216 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47414 * 300.00163 * 23 21 19 27 27 N 1.31122 * 106.89702 * 359.73905 * 12 11 10 28 28 H 1.09002 * 109.47152 * 90.00315 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00416 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00397 * 1 2 3 31 31 H 1.08009 * 120.00152 * 359.97438 * 3 2 1 32 32 H 1.07996 * 120.00197 * 179.97438 * 4 3 2 33 33 H 1.08003 * 119.99876 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.99584 * 179.97438 * 6 5 4 35 35 H 1.09007 * 109.46764 * 204.99790 * 8 7 2 36 36 H 1.09000 * 109.47236 * 324.99456 * 8 7 2 37 37 H 1.09002 * 109.47345 * 30.02339 * 13 12 11 38 38 H 1.08993 * 109.47335 * 150.02869 * 13 12 11 39 39 H 1.08996 * 109.47105 * 59.99809 * 15 14 13 40 40 H 1.09001 * 109.46524 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.46552 * 299.99248 * 15 14 13 42 42 H 1.08992 * 109.47233 * 180.02562 * 18 16 14 43 43 H 1.08997 * 109.46794 * 300.00228 * 18 16 14 44 44 H 1.09000 * 109.46864 * 59.99672 * 18 16 14 45 45 H 0.96996 * 119.99852 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0005 7 6 2.1981 -1.1970 0.0058 8 6 1.4446 -2.5020 0.0116 9 6 1.0867 -2.8817 -1.4021 10 7 -0.0023 -2.5581 -2.0332 11 8 0.0122 -3.0147 -3.1568 12 6 1.1419 -3.7014 -3.3522 13 6 1.5446 -4.4278 -4.6097 14 7 1.0572 -5.8125 -4.5526 15 6 -0.4110 -5.8553 -4.5792 16 6 1.6271 -6.6164 -5.6421 17 1 2.7147 -6.5523 -5.6104 18 6 1.1238 -6.0848 -6.9855 19 6 1.2037 -8.0537 -5.4802 20 1 0.5740 -8.3411 -4.6512 21 6 1.6204 -9.0018 -6.3905 22 7 2.3877 -8.6519 -7.3997 23 14 1.0951 -10.7832 -6.1903 24 1 -0.3867 -10.8703 -6.2344 25 1 1.6722 -11.5962 -7.2908 26 1 1.5825 -11.2994 -4.8860 27 7 1.8329 -3.6227 -2.2406 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.6583 2.1327 -0.0004 32 1 4.1204 2.1327 0.0001 33 1 5.3517 0.0000 0.0005 34 1 4.1207 -2.1323 0.0001 35 1 2.0694 -3.2804 0.4497 36 1 0.5337 -2.3930 0.6002 37 1 1.1109 -3.9254 -5.4743 38 1 2.6310 -4.4284 -4.6970 39 1 -0.7713 -5.3956 -5.4994 40 1 -0.7450 -6.8920 -4.5363 41 1 -0.8059 -5.3103 -3.7218 42 1 1.5463 -6.6815 -7.7938 43 1 0.0362 -6.1489 -7.0172 44 1 1.4299 -5.0452 -7.1025 45 1 2.6811 -9.3190 -8.0399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161800671.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:12 Heat of formation + Delta-G solvation = 80.620311 kcal Electronic energy + Delta-G solvation = -25780.424811 eV Core-core repulsion = 22186.605279 eV Total energy + Delta-G solvation = -3593.819531 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.58065 -40.53818 -39.17344 -37.12687 -35.28925 -34.47954 -33.46087 -32.76867 -30.72219 -29.02630 -28.95618 -27.56169 -27.18596 -25.97776 -24.47300 -23.38511 -22.56195 -21.58760 -21.06118 -19.16835 -18.53306 -18.15599 -17.29374 -17.09867 -16.60737 -16.17730 -16.07238 -15.90225 -15.74256 -15.31513 -14.55719 -14.50880 -14.38823 -14.22586 -13.99493 -13.74503 -13.47937 -13.26955 -13.02276 -12.97523 -12.91049 -12.88412 -12.70999 -12.62242 -12.49947 -12.34666 -12.06506 -12.00044 -11.93230 -11.86126 -11.74317 -11.01150 -10.84798 -10.46629 -9.78623 -9.57638 -9.03849 -8.09319 -6.19124 0.06522 0.33385 0.44290 1.22889 1.45926 1.47020 1.54083 1.76793 2.45106 2.56432 2.85518 3.09520 3.20893 3.36253 3.72855 3.81174 3.96431 4.01857 4.12353 4.22826 4.29816 4.39694 4.44087 4.48216 4.55484 4.68745 4.70928 4.73419 4.80525 4.80911 4.82310 4.90802 4.94894 4.99431 5.11718 5.11758 5.15740 5.27883 5.53225 5.53361 5.58052 5.67452 5.71035 5.78398 6.07838 6.12629 6.39207 6.58214 6.91061 7.13978 7.49290 8.96472 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.025685 B = 0.002592 C = 0.002536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.865408 B =10801.092933 C =11039.041234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.117 4.117 5 C -0.135 4.135 6 C -0.112 4.112 7 C -0.103 4.103 8 C 0.012 3.988 9 C 0.177 3.823 10 N -0.394 5.394 11 O 0.064 5.936 12 C 0.209 3.791 13 C 0.143 3.857 14 N -0.540 5.540 15 C 0.036 3.964 16 C 0.220 3.780 17 H 0.019 0.981 18 C -0.164 4.164 19 C -0.517 4.517 20 H 0.056 0.944 21 C 0.017 3.983 22 N -0.916 5.916 23 Si 0.954 3.046 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.277 1.277 27 N -0.490 5.490 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.128 0.872 35 H 0.111 0.889 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.930 19.017 13.498 23.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.135 4.135 5 C -0.153 4.153 6 C -0.130 4.130 7 C -0.105 4.105 8 C -0.027 4.027 9 C -0.096 4.096 10 N -0.105 5.105 11 O 0.009 5.991 12 C -0.012 4.012 13 C 0.014 3.986 14 N -0.266 5.266 15 C -0.112 4.112 16 C 0.114 3.886 17 H 0.037 0.963 18 C -0.223 4.223 19 C -0.555 4.555 20 H 0.074 0.926 21 C -0.182 4.182 22 N -0.556 5.556 23 Si 0.781 3.219 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.202 1.202 27 N -0.224 5.224 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.159 0.841 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.146 0.854 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.134 0.866 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.990 19.123 14.404 23.962 hybrid contribution -0.323 -0.987 -1.133 1.537 sum -1.313 18.137 13.271 22.512 Atomic orbital electron populations 1.20852 0.90388 1.03569 1.02243 1.20059 0.96879 0.92816 0.98821 1.21317 0.94812 0.97757 1.01061 1.21509 0.94367 0.98974 0.98612 1.21425 1.01069 0.92215 1.00570 1.21290 0.93425 0.99341 0.98973 1.19499 0.94037 0.93377 1.03537 1.19015 1.02429 0.95955 0.85260 1.26054 0.87392 0.95476 1.00689 1.74548 1.22548 1.20449 0.92906 1.85266 1.38376 1.50104 1.25350 1.28891 0.82279 0.92275 0.97731 1.20597 1.02432 0.88791 0.86806 1.62235 1.08465 1.07221 1.48645 1.22258 0.87403 1.02227 0.99295 1.19104 0.93819 0.91053 0.84618 0.96306 1.22262 0.99658 0.98239 1.02164 1.21298 1.31225 0.93005 1.10008 0.92627 1.25579 0.95205 1.02446 0.94994 1.69975 1.35996 1.34977 1.14651 0.85667 0.78587 0.80231 0.77447 1.19724 1.21057 1.20203 1.71914 1.30735 1.18767 1.01025 0.92097 0.89771 0.91203 0.84134 0.83639 0.84121 0.85440 0.87065 0.86669 0.89680 0.86633 0.94583 0.91631 0.93061 0.91693 0.94504 0.94459 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 9.61 71.24 0.68 -1.36 16 2 C -0.09 -1.75 5.88 -19.87 -0.12 -1.87 16 3 C -0.13 -2.31 9.70 22.27 0.22 -2.10 16 4 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 5 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 6 C -0.11 -2.38 9.68 22.27 0.22 -2.16 16 7 C -0.10 -2.29 5.12 -19.87 -0.10 -2.40 16 8 C 0.01 0.26 5.47 29.10 0.16 0.42 16 9 C 0.18 5.25 7.45 138.46 1.03 6.28 16 10 N -0.39 -12.13 12.16 -60.33 -0.73 -12.86 16 11 O 0.06 2.04 10.73 74.88 0.80 2.84 16 12 C 0.21 6.91 7.07 88.38 0.63 7.53 16 13 C 0.14 4.78 5.03 85.56 0.43 5.21 16 14 N -0.54 -21.81 4.73 -906.02 -4.29 -26.10 16 15 C 0.04 1.35 8.60 127.69 1.10 2.44 16 16 C 0.22 10.40 2.34 44.17 0.10 10.51 16 17 H 0.02 0.99 8.03 -2.39 -0.02 0.97 16 18 C -0.16 -7.22 8.28 71.98 0.60 -6.62 16 19 C -0.52 -27.22 7.88 25.60 0.20 -27.02 16 20 H 0.06 2.95 6.77 -2.91 -0.02 2.93 16 21 C 0.02 0.90 5.30 84.66 0.45 1.35 16 22 N -0.92 -50.54 11.32 21.45 0.24 -50.29 16 23 Si 0.95 42.67 29.54 68.60 2.03 44.69 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 27 N -0.49 -16.58 11.55 -303.22 -3.50 -20.08 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.08 1.14 8.09 -2.39 -0.02 1.12 16 30 H 0.07 1.22 6.02 -2.38 -0.01 1.20 16 31 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.13 2.57 8.06 -2.91 -0.02 2.54 16 35 H 0.11 2.30 8.05 -2.38 -0.02 2.28 16 36 H 0.12 2.20 6.16 -2.39 -0.01 2.18 16 37 H 0.09 2.51 6.94 -2.39 -0.02 2.49 16 38 H 0.12 3.79 8.00 -2.39 -0.02 3.77 16 39 H 0.04 1.25 6.51 -2.39 -0.02 1.23 16 40 H 0.06 2.65 6.41 -2.39 -0.02 2.63 16 41 H 0.05 1.75 6.83 -2.39 -0.02 1.74 16 42 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 43 H 0.04 1.56 6.47 -2.39 -0.02 1.55 16 44 H 0.04 1.39 6.75 -2.39 -0.02 1.38 16 45 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -60.72 364.64 1.59 -59.13 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.00 Total: 16.34 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: 6.04 Total: -13.67 kcal Atomic # 7 Polarization: -101.05 SS G_CDS: -8.28 Total: -109.34 kcal Atomic # 8 Polarization: 2.04 SS G_CDS: 0.80 Total: 2.84 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -60.72 1.59 -59.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161800671.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.751 kcal (2) G-P(sol) polarization free energy of solvation -60.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds