Wall clock time and date at job start Tue Mar 31 2020 10:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38305 * 119.96201 * 2 1 4 4 C 1.38258 * 120.15081 * 179.97438 * 3 2 1 5 5 C 1.38127 * 120.07507 * 359.74177 * 4 3 2 6 6 C 1.38889 * 119.92184 * 0.49075 * 5 4 3 7 7 N 1.39682 * 120.07549 * 179.79078 * 6 5 4 8 8 C 1.46504 * 119.99890 * 179.72332 * 7 6 5 9 9 C 1.46499 * 119.99728 * 359.71860 * 7 6 5 10 10 C 1.50701 * 109.46992 * 90.00127 * 9 7 6 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 7 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99566 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47162 * 90.00410 * 13 12 10 15 15 H 1.07998 * 119.99576 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00057 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99930 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99982 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47241 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47303 * 119.99759 * 18 16 14 21 21 H 1.48495 * 109.47340 * 239.99921 * 18 16 14 22 22 C 1.46490 * 120.00111 * 0.02562 * 12 10 9 23 23 C 1.53001 * 109.47305 * 89.99580 * 22 12 10 24 24 C 1.47208 * 109.47132 * 179.97438 * 23 22 12 25 25 N 9.27665 * 167.23679 * 242.37655 * 2 1 3 26 26 C 1.38079 * 119.96074 * 179.97438 * 2 1 3 27 27 H 1.08995 * 109.47201 * 270.02009 * 1 2 3 28 28 H 1.08997 * 109.46722 * 30.02768 * 1 2 3 29 29 H 1.09005 * 109.47081 * 150.02313 * 1 2 3 30 30 H 1.08001 * 119.92409 * 359.97438 * 3 2 1 31 31 H 1.07997 * 119.96778 * 179.97438 * 4 3 2 32 32 H 1.08000 * 120.04302 * 180.27535 * 5 4 3 33 33 H 1.09000 * 109.46899 * 269.99483 * 8 7 6 34 34 H 1.08992 * 109.47334 * 29.99447 * 8 7 6 35 35 H 1.08994 * 109.46680 * 150.00071 * 8 7 6 36 36 H 1.09002 * 109.47391 * 330.00118 * 9 7 6 37 37 H 1.09001 * 109.46813 * 210.00174 * 9 7 6 38 38 H 1.09000 * 109.47018 * 209.99971 * 13 12 10 39 39 H 1.09000 * 109.47828 * 330.00266 * 13 12 10 40 40 H 0.97001 * 119.99961 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.47028 * 209.99878 * 22 12 10 42 42 H 1.09002 * 109.47109 * 329.99455 * 22 12 10 43 43 H 1.09001 * 109.47263 * 299.99631 * 23 22 12 44 44 H 1.08996 * 109.47107 * 60.00334 * 23 22 12 45 45 H 1.08004 * 120.04100 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1982 0.0000 4 6 3.5804 1.2028 0.0005 5 6 4.2765 0.0098 0.0065 6 6 3.5860 -1.1953 0.0016 7 7 4.2868 -2.4036 0.0031 8 6 3.5567 -3.6738 0.0041 9 6 5.7517 -2.4007 0.0037 10 6 6.2535 -2.3982 1.4247 11 8 5.4650 -2.3993 2.3462 12 7 7.5785 -2.3959 1.6715 13 6 8.0662 -2.3940 3.0529 14 6 8.2359 -3.8143 3.5276 15 1 8.0033 -4.6360 2.8665 16 6 8.6881 -4.0645 4.8058 17 7 8.9719 -3.0638 5.6106 18 14 8.8991 -5.8248 5.3940 19 1 8.5155 -6.7597 4.3058 20 1 10.3177 -6.0552 5.7679 21 1 8.0314 -6.0592 6.5760 22 6 8.5309 -2.3951 0.5584 23 6 8.8600 -0.9524 0.1697 24 6 9.8175 -0.9517 -0.9484 25 7 10.5545 -0.9502 -1.8158 26 6 2.1966 -1.1963 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8897 -0.5143 29 1 -0.3633 -0.8902 -0.5135 30 1 1.6559 2.1325 -0.0004 31 1 4.1167 2.1401 0.0001 32 1 5.3565 0.0139 0.0114 33 1 3.3753 -3.9878 1.0320 34 1 2.6043 -3.5458 -0.5102 35 1 4.1475 -4.4327 -0.5087 36 1 6.1135 -1.5105 -0.5109 37 1 6.1170 -3.2905 -0.5091 38 1 9.0255 -1.8786 3.0988 39 1 7.3472 -1.8810 3.6915 40 1 9.2904 -3.2398 6.5098 41 1 9.4442 -2.9072 0.8614 42 1 8.0917 -2.9104 -0.2959 43 1 7.9467 -0.4403 -0.1333 44 1 9.2992 -0.4371 1.0239 45 1 1.6566 -2.1316 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170727705.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:52 Heat of formation + Delta-G solvation = 8.736770 kcal Electronic energy + Delta-G solvation = -26051.702596 eV Core-core repulsion = 22454.765960 eV Total energy + Delta-G solvation = -3596.936636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.12727 -40.06342 -37.98106 -37.14921 -36.50571 -34.86178 -33.33124 -32.16962 -31.40075 -30.11704 -28.86333 -27.37978 -26.14287 -25.30004 -24.38034 -22.54276 -21.45939 -19.84625 -18.87068 -18.39706 -18.25288 -17.87842 -17.24095 -16.65660 -16.43788 -16.02434 -15.80355 -15.60729 -15.23300 -14.97746 -14.71396 -14.61030 -14.35951 -14.34059 -14.01692 -13.90261 -13.57860 -13.51505 -13.22134 -13.02960 -12.95116 -12.89251 -12.76385 -12.70361 -12.63207 -12.53416 -12.18893 -12.13594 -11.83357 -11.64762 -11.60288 -11.05738 -10.60028 -10.32444 -9.51435 -9.45765 -8.18995 -8.14508 -6.30777 0.61547 0.79717 1.38036 1.40630 1.50817 1.68531 1.84209 1.90684 2.07321 2.38416 2.51352 3.03655 3.12396 3.17655 3.80187 3.92885 4.04276 4.06622 4.12798 4.16715 4.29759 4.39327 4.43141 4.56807 4.62185 4.64280 4.69066 4.80377 4.84678 4.89629 4.95128 5.04487 5.05681 5.09952 5.11141 5.30131 5.34470 5.48090 5.61362 5.71481 5.86931 5.88564 6.08253 6.12999 6.31647 6.61548 6.62154 6.77464 6.83646 7.34926 7.55451 8.88390 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.010790 B = 0.003961 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2594.397091 B = 7068.021352 C = 8616.058793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.053 4.053 3 C -0.194 4.194 4 C -0.077 4.077 5 C -0.218 4.218 6 C 0.211 3.789 7 N -0.618 5.618 8 C 0.093 3.907 9 C 0.109 3.891 10 C 0.479 3.521 11 O -0.580 6.580 12 N -0.598 5.598 13 C 0.261 3.739 14 C -0.537 4.537 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.927 5.927 18 Si 0.958 3.042 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.287 1.287 22 C 0.112 3.888 23 C -0.039 4.039 24 C 0.246 3.754 25 N -0.488 5.488 26 C -0.214 4.214 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.124 0.876 33 H 0.024 0.976 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.033 0.967 39 H -0.002 1.002 40 H 0.265 0.735 41 H 0.085 0.915 42 H 0.110 0.890 43 H 0.134 0.866 44 H 0.119 0.881 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.338 5.071 -15.938 20.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.054 4.054 3 C -0.214 4.214 4 C -0.095 4.095 5 C -0.240 4.240 6 C 0.110 3.890 7 N -0.327 5.327 8 C -0.049 4.049 9 C -0.018 4.018 10 C 0.266 3.734 11 O -0.459 6.459 12 N -0.330 5.330 13 C 0.140 3.860 14 C -0.576 4.576 15 H 0.073 0.927 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.783 3.217 19 H -0.190 1.190 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.013 4.013 23 C -0.080 4.080 24 C -0.071 4.071 25 N -0.166 5.166 26 C -0.236 4.236 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.142 0.858 33 H 0.042 0.958 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.128 0.872 43 H 0.152 0.848 44 H 0.137 0.863 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.506 4.920 -16.586 20.241 hybrid contribution 0.245 -0.911 1.620 1.874 sum -10.261 4.009 -14.967 18.584 Atomic orbital electron populations 1.20820 0.89622 1.03605 1.02698 1.20003 0.97086 0.92446 0.95834 1.21047 0.94315 0.97919 1.08094 1.21144 0.94594 0.97640 0.96153 1.20843 1.00047 0.91630 1.11501 1.18039 0.91729 0.86046 0.93227 1.46125 1.03699 1.03845 1.79017 1.21729 0.98078 0.84569 1.00543 1.21613 0.81204 1.07155 0.91847 1.22151 0.82017 0.75991 0.93235 1.90680 1.56059 1.50790 1.48360 1.48155 1.05405 1.71672 1.07726 1.18752 0.93611 0.95562 0.78087 1.21782 1.43559 0.93539 0.98699 0.92737 1.25742 0.95254 1.01143 0.96819 1.70038 1.46066 1.32585 1.07998 0.85508 0.77857 0.80153 0.78134 1.19046 1.19854 1.21303 1.21563 0.94870 0.95087 0.89769 1.19842 0.96365 1.00052 0.91729 1.29192 0.92940 0.91749 0.93257 1.81354 1.12058 1.10003 1.13193 1.20731 0.91957 0.98909 1.12000 0.91011 0.90174 0.90897 0.84867 0.84396 0.85801 0.95772 0.89584 0.89473 0.85373 0.85076 0.94902 0.98409 0.92651 0.89644 0.87185 0.84780 0.86284 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.24 0.71 -1.06 16 2 C -0.05 -1.20 5.88 -19.88 -0.12 -1.32 16 3 C -0.19 -4.30 9.70 22.29 0.22 -4.08 16 4 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 5 C -0.22 -5.63 9.21 22.40 0.21 -5.42 16 6 C 0.21 5.79 6.55 38.21 0.25 6.04 16 7 N -0.62 -16.07 2.50 -726.56 -1.81 -17.88 16 8 C 0.09 2.10 10.23 127.77 1.31 3.41 16 9 C 0.11 2.53 4.23 85.63 0.36 2.90 16 10 C 0.48 17.04 7.74 87.66 0.68 17.71 16 11 O -0.58 -27.97 16.01 -3.03 -0.05 -28.02 16 12 N -0.60 -20.88 2.46 -826.16 -2.03 -22.91 16 13 C 0.26 12.59 5.16 85.64 0.44 13.03 16 14 C -0.54 -28.86 9.39 25.60 0.24 -28.62 16 15 H 0.05 2.89 7.81 -2.91 -0.02 2.87 16 16 C 0.01 0.52 5.46 84.65 0.46 0.98 16 17 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 18 Si 0.96 43.60 29.54 68.60 2.03 45.63 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 C 0.11 2.55 5.17 86.38 0.45 3.00 16 23 C -0.04 -0.66 6.03 28.79 0.17 -0.49 16 24 C 0.25 5.09 15.44 89.42 1.38 6.47 16 25 N -0.49 -13.08 18.55 20.03 0.37 -12.71 16 26 C -0.21 -5.44 8.86 22.40 0.20 -5.24 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 29 H 0.07 1.02 8.08 -2.38 -0.02 1.00 16 30 H 0.13 2.31 8.06 -2.91 -0.02 2.29 16 31 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 32 H 0.12 2.83 6.15 -2.91 -0.02 2.81 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 1.56 6.20 -2.39 -0.01 1.54 16 35 H 0.09 1.52 7.89 -2.39 -0.02 1.51 16 36 H 0.13 2.18 5.25 -2.39 -0.01 2.17 16 37 H 0.13 2.23 7.15 -2.39 -0.02 2.22 16 38 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 40 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.09 2.18 8.07 -2.38 -0.02 2.16 16 42 H 0.11 1.76 6.44 -2.39 -0.02 1.74 16 43 H 0.13 1.60 7.22 -2.39 -0.02 1.58 16 44 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.13 2.87 6.14 -2.91 -0.02 2.86 16 Total: -1.00 -78.13 381.59 6.97 -71.16 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 1.00 Total: 12.73 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: 7.18 Total: 5.76 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -3.19 Total: -107.25 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -78.13 6.97 -71.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170727705.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.897 kcal (2) G-P(sol) polarization free energy of solvation -78.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds