Wall clock time and date at job start Tue Mar 31 2020 10:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38308 * 119.96155 * 2 1 4 4 C 1.38260 * 120.13828 * 180.27554 * 3 2 1 5 5 C 1.38139 * 120.06745 * 359.45741 * 4 3 2 6 6 C 1.38851 * 119.93076 * 0.26562 * 5 4 3 7 7 N 1.39925 * 120.06553 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99541 * 90.00929 * 7 6 5 9 9 C 1.53001 * 109.47252 * 89.99383 * 8 7 6 10 10 C 1.47203 * 109.47149 * 179.97438 * 9 8 7 11 11 N 7.00601 * 112.52142 * 141.91336 * 2 1 3 12 12 C 1.34775 * 120.00169 * 269.99634 * 7 6 5 13 13 O 1.21277 * 120.00171 * 0.02562 * 12 7 6 14 14 C 1.50707 * 119.99742 * 180.02562 * 12 7 6 15 15 N 1.46500 * 109.46868 * 180.02562 * 14 12 7 16 16 C 1.46497 * 120.00196 * 90.00003 * 15 14 12 17 17 C 1.36942 * 119.99854 * 269.99896 * 15 14 12 18 18 H 1.07999 * 119.99584 * 23.03961 * 17 15 14 19 19 C 1.38806 * 119.99959 * 203.04384 * 17 15 14 20 20 N 1.31611 * 120.00492 * 12.96444 * 19 17 15 21 21 Si 1.86802 * 119.99947 * 192.96656 * 19 17 15 22 22 H 1.48506 * 109.47018 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47253 * 119.99883 * 21 19 17 24 24 H 1.48502 * 109.47079 * 240.00206 * 21 19 17 25 25 C 1.38085 * 119.96408 * 179.72879 * 2 1 3 26 26 C 1.50698 * 120.03728 * 0.02562 * 25 2 1 27 27 H 1.09004 * 109.47054 * 270.27285 * 1 2 3 28 28 H 1.09000 * 109.47523 * 30.26865 * 1 2 3 29 29 H 1.09003 * 109.47460 * 150.27196 * 1 2 3 30 30 H 1.07991 * 119.93136 * 0.02562 * 3 2 1 31 31 H 1.08000 * 119.96638 * 179.72708 * 4 3 2 32 32 H 1.08005 * 120.03366 * 180.29745 * 5 4 3 33 33 H 1.08999 * 109.46676 * 209.99061 * 8 7 6 34 34 H 1.08992 * 109.47389 * 329.99194 * 8 7 6 35 35 H 1.08999 * 109.47467 * 299.99756 * 9 8 7 36 36 H 1.09004 * 109.47091 * 60.00035 * 9 8 7 37 37 H 1.08999 * 109.47252 * 300.00129 * 14 12 7 38 38 H 1.08991 * 109.46936 * 60.00521 * 14 12 7 39 39 H 1.09003 * 109.47078 * 95.12435 * 16 15 14 40 40 H 1.09005 * 109.47141 * 215.12131 * 16 15 14 41 41 H 1.08997 * 109.47062 * 335.11787 * 16 15 14 42 42 H 0.97000 * 120.00903 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46943 * 269.97687 * 26 25 2 44 44 H 1.09001 * 109.47323 * 29.97378 * 26 25 2 45 45 H 1.09006 * 109.47283 * 149.97728 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1982 0.0000 4 6 3.5803 1.2025 -0.0058 5 6 4.2761 0.0092 -0.0002 6 6 3.5856 -1.1954 0.0056 7 7 4.2876 -2.4058 0.0107 8 6 4.6555 -3.0338 1.2822 9 6 3.5357 -3.9759 1.7286 10 6 3.9056 -4.6073 3.0058 11 7 4.1905 -5.0937 3.9921 12 6 4.6250 -2.9941 -1.1540 13 8 4.3206 -2.4741 -2.2065 14 6 5.3805 -4.2981 -1.1484 15 7 5.6254 -4.7264 -2.5278 16 6 6.8455 -4.3046 -3.2202 17 6 4.7137 -5.5212 -3.1700 18 1 3.6842 -5.5343 -2.8437 19 6 5.1127 -6.3101 -4.2402 20 7 6.3935 -6.4955 -4.4796 21 14 3.8317 -7.1085 -5.3407 22 1 2.4732 -6.7473 -4.8617 23 1 4.0091 -6.6294 -6.7350 24 1 3.9944 -8.5840 -5.2997 25 6 2.1967 -1.1963 0.0057 26 6 1.4432 -2.5014 0.0113 27 1 -0.3633 0.0049 1.0277 28 1 -0.3634 0.8875 -0.5180 29 1 -0.3634 -0.8924 -0.5096 30 1 1.6560 2.1325 0.0004 31 1 4.1168 2.1398 -0.0102 32 1 5.3562 0.0132 0.0002 33 1 5.5776 -3.6006 1.1539 34 1 4.8048 -2.2631 2.0382 35 1 2.6134 -3.4092 1.8568 36 1 3.3863 -4.7468 0.9724 37 1 6.3329 -4.1640 -0.6355 38 1 4.7928 -5.0563 -0.6311 39 1 7.6055 -5.0798 -3.1220 40 1 6.6267 -4.1421 -4.2756 41 1 7.2122 -3.3781 -2.7784 42 1 6.6724 -7.0464 -5.2276 43 1 1.2615 -2.8116 1.0403 44 1 0.4908 -2.3733 -0.5031 45 1 2.0323 -3.2633 -0.4993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170777811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:52 Heat of formation + Delta-G solvation = 33.955463 kcal Electronic energy + Delta-G solvation = -26767.464385 eV Core-core repulsion = 23171.621313 eV Total energy + Delta-G solvation = -3595.843071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 315.169 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66760 -39.70531 -38.03289 -37.12987 -36.54007 -34.32695 -33.41221 -32.75444 -31.49003 -29.22554 -28.02421 -27.77794 -27.12043 -25.28416 -24.21930 -22.47703 -21.73307 -20.01128 -18.96421 -18.58508 -18.12027 -17.44382 -16.91345 -16.82430 -16.51456 -16.04826 -15.71167 -15.41392 -15.18060 -14.86250 -14.72094 -14.61992 -14.34267 -13.85007 -13.80554 -13.67912 -13.57788 -13.50591 -13.39337 -13.09397 -12.85181 -12.79877 -12.72209 -12.62283 -12.55665 -12.29928 -12.15288 -11.99749 -11.91849 -11.79721 -11.71508 -10.92326 -10.54252 -9.84275 -9.51522 -9.40297 -8.77876 -7.82354 -5.30199 0.38770 0.50002 1.45345 1.48942 1.57927 1.64075 1.84311 1.87592 2.05449 2.52482 2.78434 3.12368 3.34245 3.69378 3.90417 3.93727 4.00860 4.05257 4.11879 4.19841 4.31706 4.40283 4.44131 4.54197 4.61917 4.68623 4.72496 4.79714 4.80908 4.87668 4.91337 4.97254 5.04078 5.05742 5.17970 5.32349 5.45080 5.54296 5.62404 5.63147 5.69697 5.74229 5.82783 6.22575 6.30766 6.41488 6.61502 7.13488 7.44848 7.84426 8.26186 9.21471 Molecular weight = 315.17amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004408 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.354385 B = 6349.846791 C = 7200.175835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.092 4.092 3 C -0.122 4.122 4 C -0.121 4.121 5 C -0.132 4.132 6 C 0.126 3.874 7 N -0.570 5.570 8 C 0.117 3.883 9 C -0.051 4.051 10 C 0.244 3.756 11 N -0.487 5.487 12 C 0.490 3.510 13 O -0.560 6.560 14 C 0.132 3.868 15 N -0.595 5.595 16 C 0.181 3.819 17 C -0.252 4.252 18 H 0.066 0.934 19 C -0.049 4.049 20 N -0.935 5.935 21 Si 0.962 3.038 22 H -0.269 1.269 23 H -0.297 1.297 24 H -0.286 1.286 25 C -0.093 4.093 26 C -0.119 4.119 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.120 0.880 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.133 0.867 36 H 0.122 0.878 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.019 0.981 40 H 0.006 0.994 41 H 0.020 0.980 42 H 0.248 0.752 43 H 0.100 0.900 44 H 0.075 0.925 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 14.176 14.805 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.092 4.092 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.151 4.151 6 C 0.037 3.963 7 N -0.302 5.302 8 C -0.006 4.006 9 C -0.091 4.091 10 C -0.073 4.073 11 N -0.165 5.165 12 C 0.278 3.722 13 O -0.435 6.435 14 C 0.001 3.999 15 N -0.315 5.315 16 C 0.036 3.964 17 C -0.382 4.382 18 H 0.084 0.916 19 C -0.244 4.244 20 N -0.582 5.582 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.224 1.224 24 H -0.213 1.213 25 C -0.094 4.094 26 C -0.175 4.175 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.163 0.837 31 H 0.161 0.839 32 H 0.138 0.862 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.038 0.962 40 H 0.024 0.976 41 H 0.039 0.961 42 H 0.057 0.943 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -9.122 13.573 15.539 22.558 hybrid contribution -0.257 -0.264 -1.529 1.572 sum -9.379 13.309 14.010 21.480 Atomic orbital electron populations 1.20893 0.89380 1.03401 1.03374 1.20002 0.97418 0.92046 0.99762 1.21355 0.94233 0.98273 1.00087 1.21253 0.94719 0.97872 1.00063 1.21444 1.00291 0.92349 1.01008 1.17626 0.90375 0.85755 1.02589 1.45694 1.56985 1.21103 1.06460 1.21678 0.97275 0.97002 0.84688 1.20147 1.02005 0.99870 0.87127 1.29099 0.92031 0.92197 0.94013 1.81282 1.10180 1.11155 1.13867 1.23290 0.78668 0.87847 0.82374 1.90662 1.54485 1.65535 1.32817 1.21063 0.99744 0.91847 0.87267 1.43758 1.21898 1.55484 1.10365 1.20520 0.87776 0.93854 0.94254 1.19385 0.90186 1.16017 1.12580 0.91582 1.25663 0.97511 0.99394 1.01807 1.70201 1.14731 1.42301 1.30927 0.85281 0.79343 0.77735 0.78555 1.19306 1.22392 1.21258 1.20164 0.92643 0.96468 1.00160 1.21021 0.99876 0.93398 1.03229 0.89506 0.90704 0.91224 0.83719 0.83931 0.86152 0.87701 0.87487 0.84991 0.85971 0.88366 0.88045 0.96236 0.97554 0.96100 0.94264 0.88227 0.90601 0.93178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.60 71.24 0.68 -0.92 16 2 C -0.09 -1.83 5.88 -19.88 -0.12 -1.94 16 3 C -0.12 -2.26 9.70 22.29 0.22 -2.04 16 4 C -0.12 -2.42 10.04 22.25 0.22 -2.20 16 5 C -0.13 -3.17 9.97 22.39 0.22 -2.95 16 6 C 0.13 3.21 4.44 38.15 0.17 3.38 16 7 N -0.57 -14.13 1.68 -631.26 -1.06 -15.19 16 8 C 0.12 1.86 5.16 86.38 0.45 2.31 16 9 C -0.05 -0.70 5.11 28.79 0.15 -0.55 16 10 C 0.24 4.49 15.43 89.44 1.38 5.87 16 11 N -0.49 -12.21 18.54 20.01 0.37 -11.84 16 12 C 0.49 17.26 7.04 87.66 0.62 17.88 16 13 O -0.56 -26.29 16.40 -3.02 -0.05 -26.34 16 14 C 0.13 4.70 4.68 85.64 0.40 5.10 16 15 N -0.59 -29.43 2.41 -731.31 -1.76 -31.20 16 16 C 0.18 9.18 8.98 127.77 1.15 10.33 16 17 C -0.25 -13.75 9.65 84.03 0.81 -12.94 16 18 H 0.07 3.54 7.86 -2.91 -0.02 3.51 16 19 C -0.05 -2.74 5.10 84.86 0.43 -2.31 16 20 N -0.93 -55.27 10.71 21.65 0.23 -55.04 16 21 Si 0.96 45.69 29.57 68.60 2.03 47.72 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 C -0.09 -2.14 5.90 -19.74 -0.12 -2.26 16 26 C -0.12 -2.35 7.93 71.24 0.56 -1.79 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 29 H 0.07 1.01 5.94 -2.39 -0.01 1.00 16 30 H 0.15 1.88 8.06 -2.92 -0.02 1.86 16 31 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 32 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 33 H 0.10 1.53 6.44 -2.39 -0.02 1.51 16 34 H 0.11 1.33 8.05 -2.39 -0.02 1.31 16 35 H 0.13 1.44 5.10 -2.39 -0.01 1.42 16 36 H 0.12 1.71 7.22 -2.39 -0.02 1.70 16 37 H 0.10 2.94 7.33 -2.39 -0.02 2.92 16 38 H 0.10 3.16 7.08 -2.39 -0.02 3.15 16 39 H 0.02 1.04 7.34 -2.39 -0.02 1.02 16 40 H 0.01 0.32 7.34 -2.38 -0.02 0.31 16 41 H 0.02 0.92 8.03 -2.39 -0.02 0.90 16 42 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 43 H 0.10 1.31 6.14 -2.39 -0.01 1.29 16 44 H 0.08 1.41 5.94 -2.39 -0.01 1.39 16 45 H 0.05 1.24 6.65 -2.38 -0.02 1.22 16 Total: -1.00 -77.92 370.42 8.00 -69.92 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 1.01 Total: 6.98 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 7.23 Total: 14.97 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -2.22 Total: -113.26 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.05 Total: -26.34 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -77.92 8.00 -69.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170777811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.875 kcal (2) G-P(sol) polarization free energy of solvation -77.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds